ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17b06 |
|---|---|
| Clone Library Name | barley_pub |
>NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor| Length = 256 Score = 46.2 bits (108), Expect = 6e-05 Identities = 21/45 (46%), Positives = 32/45 (71%) Frame = +1 Query: 346 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 480 LRL+GAC+SC SS T+ GIE +LK + D +K++ Q+ D +Q+ Sbjct: 190 LRLQGACTSCSSSEVTLKYGIESMLKH-YVDEVKEVIQIMDPEQE 233
>NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment)| Length = 112 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +1 Query: 256 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLKEKF 432 + +VLD+ VRP LI + L+GAC SCPSST T+ + IE L+++ Sbjct: 44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103 Query: 433 GDAI 444 ++ Sbjct: 104 NPSL 107
>HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5)| Length = 199 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +1 Query: 346 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 489 L+L+G+C+SCPSS T+ GI+ +L + + ++ + QV D D+ E+ Sbjct: 148 LKLQGSCTSCPSSIITLKSGIQNML-QFYIPEVEGVEQVMDDDESDEK 194
>NIFU_ANASP (P20628) Nitrogen fixation protein nifU| Length = 300 Score = 38.9 bits (89), Expect = 0.010 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 256 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLKEKF 432 + +VLD+ VRP LI + L+GAC SC SST T+ + IE L+++ Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291 Query: 433 GDAI 444 ++ Sbjct: 292 NPSL 295
>NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU| Length = 300 Score = 38.9 bits (89), Expect = 0.010 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 256 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLKEKF 432 + +VLD+ VRP LI + L+GAC SC SST T+ + IE L+++ Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291 Query: 433 GDAI 444 ++ Sbjct: 292 NPSL 295
>HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5| Length = 196 Score = 38.5 bits (88), Expect = 0.013 Identities = 17/48 (35%), Positives = 31/48 (64%) Frame = +1 Query: 346 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 489 L+L+G+C+SCPSS T+ GI+ +L + + ++ + QV D + +E Sbjct: 146 LKLQGSCTSCPSSIITLKNGIQNML-QFYIPEVEGVEQVMDDESDEKE 192
>YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c| Length = 260 Score = 36.6 bits (83), Expect = 0.048 Identities = 16/45 (35%), Positives = 30/45 (66%) Frame = +1 Query: 346 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 480 L+L GAC +C SS T+ GI+++LK + ++++ QV D +++ Sbjct: 194 LKLRGACRTCSSSAVTLKNGIQQMLKHYIPE-VENVVQVLDPEEE 237
>NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment)| Length = 205 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +1 Query: 256 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLK 423 + +VLD+ VRP LI + L+GAC SC SST T+ +E L+ Sbjct: 137 IQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSCASSTATLKDAVEAKLR 193
>Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378| Length = 194 Score = 32.7 bits (73), Expect = 0.69 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +1 Query: 346 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 480 L+ G C C + T+ GIER L E+ + +K +R V D Q+ Sbjct: 146 LQFGGGCQGCGQADVTLKEGIERTLLERIPE-LKGVRDVTDHSQK 189
>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU| Length = 310 Score = 31.6 bits (70), Expect = 1.5 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +1 Query: 346 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIK 447 +RL GACS C S TM MG++ L E G+ ++ Sbjct: 267 VRLTGACSGCSQSAGTM-MGVQAKLVEALGEFVR 299
>Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735| Length = 197 Score = 30.4 bits (67), Expect = 3.4 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 346 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 480 L+ G C C + T+ GIER L E+ + + +R V D Q+ Sbjct: 149 LQFGGGCQGCGQADVTLKEGIERTLLERIPE-LSGVRDVTDHTQK 192
>MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)| Length = 255 Score = 30.0 bits (66), Expect = 4.5 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = +1 Query: 361 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 540 AC +C +TTM+ ++E+ +K + Q FD ++ T P ++ILR AI Sbjct: 71 ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFDTLKRCTTTNPNQRLPKVEILRNAI 128
>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1| Length = 881 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 15/57 (26%) Frame = +3 Query: 369 QLSQLDDDDEHGHRASAQGE---------------VR*RHQGHPPGVRRGPATRRDD 494 ++ Q DDD+E AQG R G PPGVR G +T +D Sbjct: 616 RIQQFDDDEEEEDEEEAQGSGESDGEDGAWQGSQLARGARLGQPPGVRSGGSTDSED 672
>RGS3_CAEEL (Q18312) Regulator of G protein signaling rgs-3| Length = 363 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Frame = +1 Query: 355 EGACSSCPSSTTTMNMGI--ERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDIL 528 +G+ + SS ++ + E + E+F AIK++R++ + DQ P E +L+ L Sbjct: 169 QGSINLSSSSMKSLRNAVASETLDMEEFAPAIKEVRRLLENDQFPRFRRSELYLEYLEEL 228 Query: 529 RP 534 P Sbjct: 229 LP 230
>SYS_XANCP (Q8PA92) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 426 Score = 28.9 bits (63), Expect = 10.0 Identities = 19/41 (46%), Positives = 23/41 (56%) Frame = -2 Query: 354 KPKGDDAVLYGHDGDVAAVGDEVGAHVVEDAVDVIRRQFVG 232 K KG+D +VA GDE+ A EDA+DVIR Q G Sbjct: 63 KAKGEDVAALM--AEVAGFGDELKAS--EDALDVIRAQLEG 99
>SYFA_NITWN (Q3SWK7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 369 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = +1 Query: 400 MGIERVLKEKFGDAIKDIRQVFDGD 474 MGI+R+ K+G I D+RQ+F+GD Sbjct: 324 MGIDRITMLKYG--IADLRQLFEGD 346
>RFCS_METKA (Q8TZC4) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) [Contains: Mkn RFC intein] Length = 635 Score = 28.9 bits (63), Expect = 10.0 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = +1 Query: 436 DAIKDI-RQVFDGDQQPEETTPEAVN 510 D ++ + R++FD D+ PEE PE VN Sbjct: 574 DVVRQVHREIFDMDEIPEEAIPELVN 599
>Y4619_SHEON (Q8E8P2) Hypothetical protein SO4619| Length = 192 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +1 Query: 346 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFD 468 L+ G C+ C T+ GIE+ L + F + +R V D Sbjct: 143 LQFGGGCNGCSQVDITLKDGIEKQLLDMFPGELTGVRDVTD 183
>UPPS_PYRKO (Q5JGE1) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 264 Score = 28.9 bits (63), Expect = 10.0 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = +1 Query: 382 STTTMNMGIERVLKEKFGDAIKDI-RQVFDGDQQPEETTPEAVNRHL 519 S +N+ + + + DA+++I R V +G +PE+ EA+ R+L Sbjct: 154 SNYNLNIALAYGGRSEIADAVREIVRDVLEGKIKPEDIDEEAIKRYL 200
>ASNB_BACSU (P54420) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC| 6.3.5.4) Length = 632 Score = 28.9 bits (63), Expect = 10.0 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = -2 Query: 516 VPVHRLRRRLFGLLVPVEHLA--DVLDGVTELLLEHSLDAHVH 394 VP H L R+ G VP+ H ++ + V ++ E DA++H Sbjct: 535 VPEHVLNRKKLGFPVPIRHWLKNEMNEWVRNIIQESQTDAYIH 577 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,067,330 Number of Sequences: 219361 Number of extensions: 1159952 Number of successful extensions: 4300 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4295 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
