ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17b03 |
|---|---|
| Clone Library Name | barley_pub |
>GATA_PSESM (Q87WR9) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 483 Score = 31.2 bits (69), Expect = 1.8 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Frame = +2 Query: 92 LDGARIGIQYETFFAGEPCEIYHCVLESKSFLEKMTVI---------QHTLPFFLPIREV 244 L G RIG+ E F AG I V ES LEK+ I QH +P + I Sbjct: 253 LKGLRIGVPKEYFSAGLDPRIAQLVHESVKELEKLGAIVKQVSLPNLQHAIPAYYVIAPA 312 Query: 245 ETEHLSSNAIKF 280 E SSN +F Sbjct: 313 EA---SSNLSRF 321
>GP5D_CHLMU (Q46441) Virulence plasmid parA family protein pGP5-D| Length = 268 Score = 31.2 bits (69), Expect = 1.8 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Frame = +2 Query: 110 GIQYETFFAGEPCEIYHCVL-ESKSFLEKMTVIQHTLPFFLPIREVETEHLSSNAIKFID 286 G+ E F AG+ ++ C++ E S L +Q F + I + E EH+ A+ F D Sbjct: 136 GLTKEAFIAGD--KLIVCLIPEPFSILG----LQKIREFLISIGKPEEEHILGVALSFWD 189 Query: 287 HLEEILQSYIDRREQVRLIKELYGNQI 367 Q+YID +I+ +Y N+I Sbjct: 190 DRSSTNQTYID------IIESIYENKI 210
>AMPM_BUCAP (Q8K9T1) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 261 Score = 30.8 bits (68), Expect = 2.4 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 296 EILQSYIDRREQVRLIKELYGNQIGELFHSLPYTL 400 E++Q+Y++ ++KE G+ IG FH PY L Sbjct: 150 EVIQNYVENNN-FSVVKEYCGHGIGRAFHEEPYVL 183
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3703 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +2 Query: 116 QYETFFAGEPCEIYHCVLESKSFLEKMTVIQH 211 Q+E+ GE C YHCVL + S K+ +IQH Sbjct: 1076 QHESGVEGESC-YYHCVLCNYSTKAKLNLIQH 1106
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +2 Query: 116 QYETFFAGEPCEIYHCVLESKSFLEKMTVIQH 211 Q+E+ GE C YHCVL + S K+ +IQH Sbjct: 1077 QHESGVEGESC-YYHCVLCNYSTKAKLNLIQH 1107
>GATA_PSEPK (Q88PB9) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 483 Score = 29.6 bits (65), Expect = 5.3 Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 9/105 (8%) Frame = +2 Query: 92 LDGARIGIQYETFFAGEPCEIYHCVLESKSFLEKMTVI---------QHTLPFFLPIREV 244 L G RIG+ E F AG I V S LEK+ + QH +P + I Sbjct: 253 LQGLRIGLPKEYFGAGLDPRIADLVQASVKELEKLGAVVKEISLPNMQHAIPAYYVIAPA 312 Query: 245 ETEHLSSNAIKFIDHLEEILQSYIDRREQVRLIKELYGNQIGELF 379 E SSN +F + + Y R E+ + + +LY GE F Sbjct: 313 EA---SSNLSRF----DGVRFGY--RCEEPKDLTDLYKRSRGEGF 348
>RPOB_RICPR (O52271) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1374 Score = 29.6 bits (65), Expect = 5.3 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 9/89 (10%) Frame = +2 Query: 170 ESKSFLEKMTVIQHTL-PFFLPIR----EVETEHLSSNAIKFIDHLEEILQSYIDRREQV 334 E FLE TV+ L P LP R ++ HL +I + +++ Y D + Sbjct: 1113 EDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWASINLAKKISTLVKEYKDNHIDI 1172 Query: 335 RLIK----ELYGNQIGELFHSLPYTLIEF 409 IK ELYG I + +I F Sbjct: 1173 EEIKKFLLELYGKDINYILEGSEEEIISF 1201
>SYK_THETN (Q8R7N1) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 499 Score = 29.3 bits (64), Expect = 6.9 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%) Frame = +2 Query: 167 LESKSFLEKMTVIQHTLPFFLPIREVETEHLSSNAIKFIDHLEEILQSYIDRR-----EQ 331 L+++ FLE T + HT+ R T H NA+ +L L+ ++ R E+ Sbjct: 192 LDNRGFLEVETPVLHTIAGGAAARPFITHH---NALDIDMYLRIALELHLKRLIVGGFEK 248 Query: 332 VRLIKELYGNQIGELFHSLPYTLIE 406 V I ++ N+ ++ H+ +TL+E Sbjct: 249 VYEIGRVFRNEGMDIRHNPEFTLLE 273
>OFUT1_PANTR (Q6EV69) GDP-fucose protein O-fucosyltransferase 1 precursor (EC| 2.4.1.221) (Peptide-O-fucosyltransferase) (O-FucT-1) Length = 388 Score = 29.3 bits (64), Expect = 6.9 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2 Query: 113 IQYETFFAGEPCEIYHCVLESKSFLEKM 196 + Y+ +F EP + YH V+ + F+EK+ Sbjct: 85 VSYQKYFKLEPLQAYHRVISLEDFMEKL 112
>OFUT1_HUMAN (Q9H488) GDP-fucose protein O-fucosyltransferase 1 precursor (EC| 2.4.1.221) (Peptide-O-fucosyltransferase) (O-FucT-1) Length = 388 Score = 29.3 bits (64), Expect = 6.9 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2 Query: 113 IQYETFFAGEPCEIYHCVLESKSFLEKM 196 + Y+ +F EP + YH V+ + F+EK+ Sbjct: 85 VSYQKYFKLEPLQAYHRVISLEDFMEKL 112
>GAPN_MAIZE (Q43272) NADP-dependent glyceraldehyde-3-phosphate dehydrogenase| (EC 1.2.1.9) (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase [NADP+]) (Triosephosphate dehydrogenase) Length = 498 Score = 29.3 bits (64), Expect = 6.9 Identities = 11/49 (22%), Positives = 26/49 (53%) Frame = -3 Query: 507 SGQAKTLA*LGRVKIRSEYRILTVTLHSKSSSVNSIKVYGRLWNNSPIW 361 S K++A + +++YR+ T + ++++ KV + W +P+W Sbjct: 29 SASGKSVAIVNPTTRKTQYRVQACTQEEVNKAMDAAKVAQKAWARTPLW 77
>OFUT1_RAT (Q6EV70) GDP-fucose protein O-fucosyltransferase 1 precursor (EC| 2.4.1.221) (Peptide-O-fucosyltransferase) (O-FucT-1) Length = 395 Score = 29.3 bits (64), Expect = 6.9 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2 Query: 113 IQYETFFAGEPCEIYHCVLESKSFLEKM 196 + Y+ +F EP + YH V+ + F+EK+ Sbjct: 92 VSYQKYFKLEPLQAYHRVISLEDFMEKL 119
>VASN_XENTR (Q6DF55) Vasorin precursor| Length = 661 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Frame = +2 Query: 302 LQSYIDRREQVRLIK----ELYGNQIGELFHSLPYTLIEFTL 415 LQSY +E++R I+ LYG + + LP TL E+T+ Sbjct: 471 LQSYSQNKEKLRAIRLTVRNLYGADRRPMIYKLPPTLPEYTV 512
>Y825_CHLMU (Q9PJK4) Hypothetical protein TC0825| Length = 238 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%) Frame = +2 Query: 296 EILQSYIDRREQVRLIKELYGNQI-GELFHSLPYTLIEF 409 E++++YI ++ LIK +Y + I G+LFHSLP L +F Sbjct: 138 EVIRAYIVPPKEP-LIKTVYASAITGKLFHSLPTLLEDF 175
>Y538_CHLTR (O84543) Protein CT_538| Length = 238 Score = 28.9 bits (63), Expect = 9.0 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 4/90 (4%) Frame = +2 Query: 152 IYHCVLESKSFLEKMTVI-QHTLPFFLPIREVETEHLSSNAIK--FIDHLEEILQSYIDR 322 IY C K F + + Q + +L E S A+K + E++++YI Sbjct: 87 IYICPFTGKVFADNVYANPQDAIYDWLSSCPQNRERQSGVAVKRFLVSDDPEVIRAYIVP 146 Query: 323 REQVRLIKELYGNQI-GELFHSLPYTLIEF 409 ++ +IK +Y + + G+LFHSLP L +F Sbjct: 147 PKEP-IIKTVYASAVTGKLFHSLPTLLEDF 175
>DYHC_SCHPO (O13290) Dynein heavy chain, cytosolic (DYHC)| Length = 4196 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 403 YQGIWKTVEQFSDLVAIELLDKTNLF 326 YQ WK VE F +L ++ LL K+ LF Sbjct: 1050 YQNYWKKVEPFLNLNSLNLLLKSELF 1075
>DPH4_YEAST (P47138) Diphthamide biosynthesis protein 4 (J protein type 3)| Length = 172 Score = 28.9 bits (63), Expect = 9.0 Identities = 22/56 (39%), Positives = 29/56 (51%) Frame = +2 Query: 257 LSSNAIKFIDHLEEILQSYIDRREQVRLIKELYGNQIGELFHSLPYTLIEFTLEDF 424 +S+ I I +IL + RRE RLI E Y Q FH+ L EF+L+DF Sbjct: 48 VSNVTINKIQDAYKILSNIKTRREYDRLILENYKRQ---GFHNCGDGLDEFSLDDF 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,600,827 Number of Sequences: 219361 Number of extensions: 1435122 Number of successful extensions: 3889 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3799 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3887 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
