| Clone Name | basd16m01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103592.1| Zea mays PCO075678 mRNA sequence Length = 1471 Score = 149 bits (75), Expect = 7e-33 Identities = 210/255 (82%) Strand = Plus / Plus Query: 15 cagtcctccacctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgg 74 |||||||| || |||||||||||||||||||| ||||| || || |||||||| ||| || Sbjct: 292 cagtcctctacgtacgggaaggtgctcgtcctcgatggagttattcaggtgacggagagg 351 Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgctcaatcaaggatcca 134 || ||||| || ||||| |||||||| || ||||| || || ||||| ||||| || || Sbjct: 352 gatgagtgtgcgtaccaagagatgatcactcacctgcccctttgctccatcaaagacccc 411 Query: 135 aagaaggtcctggtcataggtggcggagacggcggcgttctgcgggaggtctcacggcac 194 |||||||| |||| || || || || ||||| || |||||||| ||||| |||||||| Sbjct: 412 aagaaggtgttggttattggagggggtgacggtggtgttctgcgtgaggtttcacggcat 471 Query: 195 tcctcggtggagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaag 254 ||||| ||||| || || |||||||| || || |||||||||||||| ||||| ||||| Sbjct: 472 tcctctgtggaacaaattgacatctgtgaaattgacaagatggtggtagatgtatccaaa 531 Query: 255 cagttcttccctcat 269 || || ||||||||| Sbjct: 532 caatttttccctcat 546
>gb|BT024141.1| Zea mays clone EL01N0442H12 mRNA sequence Length = 1281 Score = 141 bits (71), Expect = 2e-30 Identities = 209/255 (81%) Strand = Plus / Plus Query: 15 cagtcctccacctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgg 74 |||||||| || |||||||||||||||||||| ||||| || || ||||| || ||| || Sbjct: 233 cagtcctctacgtacgggaaggtgctcgtccttgatggagttattcaggttacggagagg 292 Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgctcaatcaaggatcca 134 || ||||| || ||||| |||||||| || ||||| || || ||||| ||||| ||||| Sbjct: 293 gatgagtgtgcgtaccaagagatgatcactcacctgcccctttgctccatcaaagatccc 352 Query: 135 aagaaggtcctggtcataggtggcggagacggcggcgttctgcgggaggtctcacggcac 194 |||||||| |||| || || || || || || || |||||||| ||||| |||||||| Sbjct: 353 aagaaggtgttggttattggagggggtgatggtggtgttctgcgtgaggtttcacggcat 412 Query: 195 tcctcggtggagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaag 254 ||||| ||||| || || |||||||| || || |||||||||||||| ||||| ||||| Sbjct: 413 tcctctgtggaacaaattgacatctgtgaaattgacaagatggtggtagatgtatccaaa 472 Query: 255 cagttcttccctcat 269 || || ||||||||| Sbjct: 473 caatttttccctcat 487
>ref|NM_187782.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 139 bits (70), Expect = 6e-30 Identities = 223/274 (81%) Strand = Plus / Plus Query: 1 atgtgctggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatcc 60 ||||| |||| || ||||||||||| ||||| |||||||| || |||||||| ||||| | Sbjct: 188 atgtgatggtgtttcagtcctccacgtacggcaaggtgcttgtgctggatggagtgattc 247 Query: 61 aggtgaccgagcgggacgagtgcgcctaccaggagatgattacccaccttcctctctgct 120 |||| || ||| |||| ||||| || ||||| ||||||||||||||||| || || |||| Sbjct: 248 aggtcactgagagggatgagtgtgcttaccaagagatgattacccacctccccctttgct 307 Query: 121 caatcaaggatccaaagaaggtcctggtcataggtggcggagacggcggcgttctgcggg 180 | ||||| ||||| |||||||| | || || || || ||||| || || ||| |||| | Sbjct: 308 ctatcaaagatcccaagaaggtgttagttattggaggtggagatggtggtgttttgcgtg 367 Query: 181 aggtctcacggcactcctcggtggagcagatcgacatctgcgagatcgacaagatggtgg 240 | || ||||| || |||||||||||||| || ||||| || || || || |||||||||| Sbjct: 368 aagtttcacgacattcctcggtggagcaaattgacatatgtgaaattgataagatggtgg 427 Query: 241 tcgatgtgtccaagcagttcttccctcatctggc 274 | ||||| ||||| || || || ||||||||||| Sbjct: 428 tagatgtctccaaacaattttttcctcatctggc 461
>ref|XM_507360.1| PREDICTED Oryza sativa (japonica cultivar-group), P0492E07.108 mRNA Length = 1297 Score = 139 bits (70), Expect = 6e-30 Identities = 223/274 (81%) Strand = Plus / Plus Query: 1 atgtgctggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatcc 60 ||||| |||| || ||||||||||| ||||| |||||||| || |||||||| ||||| | Sbjct: 327 atgtgatggtgtttcagtcctccacgtacggcaaggtgcttgtgctggatggagtgattc 386 Query: 61 aggtgaccgagcgggacgagtgcgcctaccaggagatgattacccaccttcctctctgct 120 |||| || ||| |||| ||||| || ||||| ||||||||||||||||| || || |||| Sbjct: 387 aggtcactgagagggatgagtgtgcttaccaagagatgattacccacctccccctttgct 446 Query: 121 caatcaaggatccaaagaaggtcctggtcataggtggcggagacggcggcgttctgcggg 180 | ||||| ||||| |||||||| | || || || || ||||| || || ||| |||| | Sbjct: 447 ctatcaaagatcccaagaaggtgttagttattggaggtggagatggtggtgttttgcgtg 506 Query: 181 aggtctcacggcactcctcggtggagcagatcgacatctgcgagatcgacaagatggtgg 240 | || ||||| || |||||||||||||| || ||||| || || || || |||||||||| Sbjct: 507 aagtttcacgacattcctcggtggagcaaattgacatatgtgaaattgataagatggtgg 566 Query: 241 tcgatgtgtccaagcagttcttccctcatctggc 274 | ||||| ||||| || || || ||||||||||| Sbjct: 567 tagatgtctccaaacaattttttcctcatctggc 600
>ref|XM_506281.2| PREDICTED Oryza sativa (japonica cultivar-group), P0492E07.108 mRNA Length = 1346 Score = 139 bits (70), Expect = 6e-30 Identities = 223/274 (81%) Strand = Plus / Plus Query: 1 atgtgctggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatcc 60 ||||| |||| || ||||||||||| ||||| |||||||| || |||||||| ||||| | Sbjct: 328 atgtgatggtgtttcagtcctccacgtacggcaaggtgcttgtgctggatggagtgattc 387 Query: 61 aggtgaccgagcgggacgagtgcgcctaccaggagatgattacccaccttcctctctgct 120 |||| || ||| |||| ||||| || ||||| ||||||||||||||||| || || |||| Sbjct: 388 aggtcactgagagggatgagtgtgcttaccaagagatgattacccacctccccctttgct 447 Query: 121 caatcaaggatccaaagaaggtcctggtcataggtggcggagacggcggcgttctgcggg 180 | ||||| ||||| |||||||| | || || || || ||||| || || ||| |||| | Sbjct: 448 ctatcaaagatcccaagaaggtgttagttattggaggtggagatggtggtgttttgcgtg 507 Query: 181 aggtctcacggcactcctcggtggagcagatcgacatctgcgagatcgacaagatggtgg 240 | || ||||| || |||||||||||||| || ||||| || || || || |||||||||| Sbjct: 508 aagtttcacgacattcctcggtggagcaaattgacatatgtgaaattgataagatggtgg 567 Query: 241 tcgatgtgtccaagcagttcttccctcatctggc 274 | ||||| ||||| || || || ||||||||||| Sbjct: 568 tagatgtctccaaacaattttttcctcatctggc 601
>dbj|AK099606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048E04, full insert sequence Length = 1346 Score = 139 bits (70), Expect = 6e-30 Identities = 223/274 (81%) Strand = Plus / Plus Query: 1 atgtgctggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatcc 60 ||||| |||| || ||||||||||| ||||| |||||||| || |||||||| ||||| | Sbjct: 328 atgtgatggtgtttcagtcctccacgtacggcaaggtgcttgtgctggatggagtgattc 387 Query: 61 aggtgaccgagcgggacgagtgcgcctaccaggagatgattacccaccttcctctctgct 120 |||| || ||| |||| ||||| || ||||| ||||||||||||||||| || || |||| Sbjct: 388 aggtcactgagagggatgagtgtgcttaccaagagatgattacccacctccccctttgct 447 Query: 121 caatcaaggatccaaagaaggtcctggtcataggtggcggagacggcggcgttctgcggg 180 | ||||| ||||| |||||||| | || || || || ||||| || || ||| |||| | Sbjct: 448 ctatcaaagatcccaagaaggtgttagttattggaggtggagatggtggtgttttgcgtg 507 Query: 181 aggtctcacggcactcctcggtggagcagatcgacatctgcgagatcgacaagatggtgg 240 | || ||||| || |||||||||||||| || ||||| || || || || |||||||||| Sbjct: 508 aagtttcacgacattcctcggtggagcaaattgacatatgtgaaattgataagatggtgg 567 Query: 241 tcgatgtgtccaagcagttcttccctcatctggc 274 | ||||| ||||| || || || ||||||||||| Sbjct: 568 tagatgtctccaaacaattttttcctcatctggc 601
>dbj|AK060916.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G07, full insert sequence Length = 1297 Score = 139 bits (70), Expect = 6e-30 Identities = 223/274 (81%) Strand = Plus / Plus Query: 1 atgtgctggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatcc 60 ||||| |||| || ||||||||||| ||||| |||||||| || |||||||| ||||| | Sbjct: 327 atgtgatggtgtttcagtcctccacgtacggcaaggtgcttgtgctggatggagtgattc 386 Query: 61 aggtgaccgagcgggacgagtgcgcctaccaggagatgattacccaccttcctctctgct 120 |||| || ||| |||| ||||| || ||||| ||||||||||||||||| || || |||| Sbjct: 387 aggtcactgagagggatgagtgtgcttaccaagagatgattacccacctccccctttgct 446 Query: 121 caatcaaggatccaaagaaggtcctggtcataggtggcggagacggcggcgttctgcggg 180 | ||||| ||||| |||||||| | || || || || ||||| || || ||| |||| | Sbjct: 447 ctatcaaagatcccaagaaggtgttagttattggaggtggagatggtggtgttttgcgtg 506 Query: 181 aggtctcacggcactcctcggtggagcagatcgacatctgcgagatcgacaagatggtgg 240 | || ||||| || |||||||||||||| || ||||| || || || || |||||||||| Sbjct: 507 aagtttcacgacattcctcggtggagcaaattgacatatgtgaaattgataagatggtgg 566 Query: 241 tcgatgtgtccaagcagttcttccctcatctggc 274 | ||||| ||||| || || || ||||||||||| Sbjct: 567 tagatgtctccaaacaattttttcctcatctggc 600
>emb|AJ251298.1|OSA251298 Oryza sativa mRNA for spermidine synthase 1 (spdSyn1 gene) Length = 1308 Score = 131 bits (66), Expect = 2e-27 Identities = 222/274 (81%) Strand = Plus / Plus Query: 1 atgtgctggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatcc 60 ||||| |||| || ||||||||||| ||||| ||||| || || |||||||| ||||| | Sbjct: 290 atgtgatggtgtttcagtcctccacgtacggcaaggttcttgtgctggatggagtgattc 349 Query: 61 aggtgaccgagcgggacgagtgcgcctaccaggagatgattacccaccttcctctctgct 120 |||| || ||| |||| ||||| || ||||| ||||||||||||||||| || || |||| Sbjct: 350 aggtcactgagagggatgagtgtgcttaccaagagatgattacccacctccccctttgct 409 Query: 121 caatcaaggatccaaagaaggtcctggtcataggtggcggagacggcggcgttctgcggg 180 | ||||| ||||| |||||||| | || || || || ||||| || || ||| |||| | Sbjct: 410 ctatcaaagatcccaagaaggtgttagttattggaggtggagatggtggtgttttgcgtg 469 Query: 181 aggtctcacggcactcctcggtggagcagatcgacatctgcgagatcgacaagatggtgg 240 | || ||||| || |||||||||||||| || ||||| || || || || |||||||||| Sbjct: 470 aagtttcacgacattcctcggtggagcaaattgacatatgtgaaattgataagatggtgg 529 Query: 241 tcgatgtgtccaagcagttcttccctcatctggc 274 | ||||| ||||| || || || ||||||||||| Sbjct: 530 tagatgtctccaaacaattttttcctcatctggc 563
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 103 bits (52), Expect = 4e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 11 tttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatccaggtgaccga 70 |||| |||||||||| ||||| |||||||| || |||||||| ||||| ||||| || || Sbjct: 12667739 tttctagtcctccacgtacggcaaggtgcttgtgctggatggagtgattcaggtcactga 12667680 Query: 71 gcgggacgagtgcgcctaccaggagatgattacccaccttcctctctgctcaatcaagga 130 | |||| ||||| || ||||| ||||||||||||||||| || || ||||| ||||| || Sbjct: 12667679 gagggatgagtgtgcttaccaagagatgattacccacctccccctttgctctatcaaaga 12667620 Query: 131 tccaaagaaggt 142 ||| |||||||| Sbjct: 12667619 tcccaagaaggt 12667608 Score = 44.1 bits (22), Expect = 0.28 Identities = 52/62 (83%) Strand = Plus / Minus Query: 186 tcacggcactcctcggtggagcagatcgacatctgcgagatcgacaagatggtggtcgat 245 ||||| || |||||||||||||| || ||||| || || || || ||||||||||| ||| Sbjct: 12666203 tcacgacattcctcggtggagcaaattgacatatgtgaaattgataagatggtggtagat 12666144 Query: 246 gt 247 || Sbjct: 12666143 gt 12666142
>dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0492E07 Length = 143794 Score = 103 bits (52), Expect = 4e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 11 tttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatccaggtgaccga 70 |||| |||||||||| ||||| |||||||| || |||||||| ||||| ||||| || || Sbjct: 42209 tttctagtcctccacgtacggcaaggtgcttgtgctggatggagtgattcaggtcactga 42150 Query: 71 gcgggacgagtgcgcctaccaggagatgattacccaccttcctctctgctcaatcaagga 130 | |||| ||||| || ||||| ||||||||||||||||| || || ||||| ||||| || Sbjct: 42149 gagggatgagtgtgcttaccaagagatgattacccacctccccctttgctctatcaaaga 42090 Query: 131 tccaaagaaggt 142 ||| |||||||| Sbjct: 42089 tcccaagaaggt 42078 Score = 44.1 bits (22), Expect = 0.28 Identities = 52/62 (83%) Strand = Plus / Minus Query: 186 tcacggcactcctcggtggagcagatcgacatctgcgagatcgacaagatggtggtcgat 245 ||||| || |||||||||||||| || ||||| || || || || ||||||||||| ||| Sbjct: 40673 tcacgacattcctcggtggagcaaattgacatatgtgaaattgataagatggtggtagat 40614 Query: 246 gt 247 || Sbjct: 40613 gt 40612
>ref|XM_504715.1| Yarrowia lipolytica CLIB122, YALI0E33143g predicted mRNA Length = 879 Score = 63.9 bits (32), Expect = 3e-07 Identities = 80/96 (83%) Strand = Plus / Plus Query: 6 ctggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatccaggtg 65 ||||||||| ||||| || |||||| || || |||||||| || || | ||||||| Sbjct: 136 ctggttttcgagtccaccgactacggcaacgttctcgtccttgacggagccatccaggcc 195 Query: 66 accgagcgggacgagtgcgcctaccaggagatgatt 101 |||||||| ||||||| ||||||||||||||||||| Sbjct: 196 accgagcgagacgagtacgcctaccaggagatgatt 231
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 63.9 bits (32), Expect = 3e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 6 ctggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatccaggtg 65 ||||||||| ||||| || |||||| || || |||||||| || || | ||||||| Sbjct: 3935277 ctggttttcgagtccaccgactacggcaacgttctcgtccttgacggagccatccaggcc 3935218 Query: 66 accgagcgggacgagtgcgcctaccaggagatgatt 101 |||||||| ||||||| ||||||||||||||||||| Sbjct: 3935217 accgagcgagacgagtacgcctaccaggagatgatt 3935182
>dbj|AB240538.1| Vitis vinifera pVvSPDS mRNA for spermidine synthase, partial cds Length = 335 Score = 61.9 bits (31), Expect = 1e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 204 gagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttc 263 |||||||| || || || ||||| |||||||||||||| |||||||| |||||||| ||| Sbjct: 67 gagcagatagatatatgtgagattgacaagatggtggttgatgtgtctaagcagtttttc 126 Query: 264 cct 266 ||| Sbjct: 127 cct 129
>dbj|AB194105.1| Prunus persica pPpSPDS mRNA for spermidine synthase partial cds Length = 336 Score = 61.9 bits (31), Expect = 1e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 204 gagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttc 263 |||||||| || || || ||||| |||||||||||||| |||||||| |||||||| ||| Sbjct: 67 gagcagatagatatatgtgagattgacaagatggtggttgatgtgtctaagcagtttttc 126 Query: 264 cct 266 ||| Sbjct: 127 cct 129
>dbj|AB225678.1| Aspergillus oryzae cDNA, contig sequence: AoEST2533 Length = 529 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 136 agaaggtcctggtcataggtggcggagacggcggcgttctgcgggaggtc 185 |||||||||||||||| ||||| ||||||||||| ||||| || |||||| Sbjct: 304 agaaggtcctggtcatcggtggtggagacggcggtgttctccgtgaggtc 353 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 69 gagcgggacgagtgcgcctaccaggagatgattacccacct 109 |||||||| |||| | |||||||||||||||| |||||||| Sbjct: 237 gagcgggatgagttctcctaccaggagatgatcacccacct 277
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 136 agaaggtcctggtcataggtggcggagacggcggcgttctgcgggaggtc 185 |||||||||||||||| ||||| ||||||||||| ||||| || |||||| Sbjct: 1347662 agaaggtcctggtcatcggtggtggagacggcggtgttctccgtgaggtc 1347613 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 ctaccaggagatgattacccacct 109 ||||||||||||||| |||||||| Sbjct: 1347712 ctaccaggagatgatcacccacct 1347689
>gb|AC007872.3| The sequence of an Aspergillus parasiticus cosmid containing spermidine synthase, complete sequence Length = 33952 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 136 agaaggtcctggtcataggtggcggagacggcggcgttctgcgggaggtc 185 |||||||||||||||| ||||| ||||||||||| ||||| || |||||| Sbjct: 229 agaaggtcctggtcatcggtggtggagacggcggtgttctccgtgaggtc 278 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ctaccaggagatgattacccacct 109 ||||||||||||||| |||||||| Sbjct: 179 ctaccaggagatgatcacccacct 202
>gb|AF337636.1|AF337636 Rattus norvegicus spermidine synthase mRNA, complete cds Length = 1268 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| |||||| ||||||||| | Sbjct: 237 acctacggcaacgtgctggttctggatggcgtcatccagtgtaccgagagggacgagttc 296 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 297 tcctaccaggagatgat 313
>ref|NM_053464.1| Rattus norvegicus spermidine synthase (Srm), mRNA Length = 1268 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| |||||| ||||||||| | Sbjct: 237 acctacggcaacgtgctggttctggatggcgtcatccagtgtaccgagagggacgagttc 296 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 297 tcctaccaggagatgat 313
>ref|XM_342423.2| PREDICTED: Rattus norvegicus similar to spermidine synthase (LOC362121), mRNA Length = 918 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||| | || |||||| |||||| ||||||||| | Sbjct: 259 acctacggcaacgtgctggttctggatagcgtcatccagtgtaccgagagggacgagttc 318 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 319 tcctaccaggagatgat 335
>gb|AF043108.1|AF043108 Pisum sativum spermidine synthase 1 (SPDSYN1) mRNA, complete cds Length = 1357 Score = 50.1 bits (25), Expect = 0.005 Identities = 82/101 (81%) Strand = Plus / Plus Query: 153 ggtggcggagacggcggcgttctgcgggaggtctcacggcactcctcggtggagcagatc 212 ||||| |||||||| || || |||||||| || |||| ||||| || || || |||| Sbjct: 441 ggtggaggagacgggggagtcctgcgggaagttgcacgccactcttcagtcgaaaagata 500 Query: 213 gacatctgcgagatcgacaagatggtggtcgatgtgtccaa 253 ||||| ||||| || ||||||||||| |||||||| ||||| Sbjct: 501 gacatttgcgaaatagacaagatggttgtcgatgtctccaa 541
>dbj|AB072917.2| Malus x domestica MdSPDS2b mRNA forspermidine synthase, complete cds Length = 1276 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 222 gagatcgacaagatggtggtcgatgtgtccaagcagttcttccct 266 |||||||| ||||||||||| |||||||| || ||||| |||||| Sbjct: 482 gagatcgataagatggtggttgatgtgtctaaacagtttttccct 526
>dbj|AB072916.2| Malus x domestica MdSPDS2a mRNA forspermidine synthase, complete cds Length = 1359 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 222 gagatcgacaagatggtggtcgatgtgtccaagcagttcttccct 266 |||||||| ||||||||||| |||||||| || ||||| |||||| Sbjct: 554 gagatcgataagatggtggttgatgtgtctaaacagtttttccct 598
>ref|XM_955814.1| Neurospora crassa OR74A SPERMIDINE SYNTHASE (PUTRESCINE AMINOPROPYLTRANSFERASE) (SPDSY) (NCU06727.1) partial mRNA Length = 876 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Plus Query: 66 accgagcgggacgagtgcgcctaccaggagatgattacccacct 109 |||||||| || |||| | |||||||||||||||| |||||||| Sbjct: 193 accgagcgcgatgagttctcctaccaggagatgatcacccacct 236
>ref|XM_327012.1| Neurospora crassa OR74A SPERMIDINE SYNTHASE (PUTRESCINE AMINOPROPYLTRANSFERASE) (SPDSY) (NCU06727.1) partial mRNA Length = 876 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Plus Query: 66 accgagcgggacgagtgcgcctaccaggagatgattacccacct 109 |||||||| || |||| | |||||||||||||||| |||||||| Sbjct: 193 accgagcgcgatgagttctcctaccaggagatgatcacccacct 236
>ref|XM_653199.1| Aspergillus nidulans FGSC A4 spermidine synthase (AN0687.2), mRNA Length = 879 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Plus Query: 66 accgagcgggacgagtgcgcctaccaggagatgattacccacct 109 |||||||| || |||| | |||||||||| |||||||||||||| Sbjct: 193 accgagcgtgatgagttctcctaccaggaaatgattacccacct 236
>emb|BX294092.1|NCB11H7 Neurospora crassa DNA linkage group V BAC clone B11H7 Length = 74977 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Minus Query: 66 accgagcgggacgagtgcgcctaccaggagatgattacccacct 109 |||||||| || |||| | |||||||||||||||| |||||||| Sbjct: 53441 accgagcgcgatgagttctcctaccaggagatgatcacccacct 53398
>dbj|AB001598.1| Neurospora crassa gene for spermidine synthase, complete cds Length = 3370 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Plus Query: 66 accgagcgggacgagtgcgcctaccaggagatgattacccacct 109 |||||||| || |||| | |||||||||||||||| |||||||| Sbjct: 1141 accgagcgcgatgagttctcctaccaggagatgatcacccacct 1184
>ref|XM_756872.1| Ustilago maydis 521 hypothetical protein (UM05818.1) partial mRNA Length = 2310 Score = 46.1 bits (23), Expect = 0.072 Identities = 41/47 (87%) Strand = Plus / Plus Query: 66 accgagcgggacgagtgcgcctaccaggagatgattacccaccttcc 112 |||||||| ||||||| ||||||||||||||||| | |||||||| Sbjct: 193 accgagcgcgacgagttttcctaccaggagatgattgctcaccttcc 239
>ref|NM_124691.2| Arabidopsis thaliana SPDS3 (SPERMIDINE SYNTHASE 3) AT5G53120 (SPDS3) transcript variant AT5G53120.3 mRNA, complete cds Length = 1893 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 732 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 781
>ref|NM_180848.1| Arabidopsis thaliana SPDS3 (SPERMIDINE SYNTHASE 3) AT5G53120 (SPDS3) transcript variant AT5G53120.2 mRNA, complete cds Length = 1919 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 758 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 807
>ref|NM_180847.1| Arabidopsis thaliana SPDS3 (SPERMIDINE SYNTHASE 3) AT5G53120 (SPDS3) transcript variant AT5G53120.1 mRNA, complete cds Length = 1949 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 788 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 837
>gb|BT015527.1| Arabidopsis thaliana At5g53120 mRNA sequence Length = 1077 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 511 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 560
>ref|XM_445476.1| Candida glabrata CBS138, CAGL0D01408g partial mRNA Length = 882 Score = 44.1 bits (22), Expect = 0.28 Identities = 34/38 (89%) Strand = Plus / Plus Query: 69 gagcgggacgagtgcgcctaccaggagatgattaccca 106 ||||| ||||||| | |||||||||||||||| ||||| Sbjct: 199 gagcgtgacgagttctcctaccaggagatgatcaccca 236
>gb|BT000742.1| Arabidopsis thaliana putative spermidine synthase (At5g53120) mRNA, complete cds Length = 1447 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 743 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 792
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Minus Query: 208 agatcgacatctgcgagatcgacaagatgg 237 ||||||| ||| |||||||||||||||||| Sbjct: 1190370 agatcgaaatccgcgagatcgacaagatgg 1190341
>gb|AY079367.1| Arabidopsis thaliana putative spermidine synthase (At5g53120) mRNA, complete cds Length = 1111 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 514 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 563
>gb|AY040013.1| Arabidopsis thaliana putative spermidine synthase (At5g53120) mRNA, complete cds Length = 1464 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 758 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 807
>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence Length = 651701 Score = 44.1 bits (22), Expect = 0.28 Identities = 34/38 (89%) Strand = Plus / Plus Query: 69 gagcgggacgagtgcgcctaccaggagatgattaccca 106 ||||| ||||||| | |||||||||||||||| ||||| Sbjct: 157981 gagcgtgacgagttctcctaccaggagatgatcaccca 158018
>gb|AF424571.1|AF424571 Arabidopsis thaliana AT5g53120/MFH8_5 mRNA, complete cds Length = 1472 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 788 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 837
>emb|BX831219.1|CNS09ZFS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS69ZD12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1437 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 746 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 795
>gb|AY087226.1| Arabidopsis thaliana clone 33021 mRNA, complete sequence Length = 1339 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Plus Query: 216 atctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttccc 265 ||||| ||||| ||||||||||| | |||||||| ||| |||||||||| Sbjct: 653 atctgtgagatagacaagatggttatagatgtgtctaagaagttcttccc 702
>dbj|AB100310.1| Petunia x hybrida spds mRNA for spermidine synthase, complete cds Length = 1249 Score = 44.1 bits (22), Expect = 0.28 Identities = 94/118 (79%) Strand = Plus / Plus Query: 7 tggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatccaggtga 66 ||||||| ||||| || || || || |||||||| || ||||||| |||||||| | | Sbjct: 251 tggtttttcagtcatcaacttatggaaaggtgcttgttttggatggtgtgatccaactca 310 Query: 67 ccgagcgggacgagtgcgcctaccaggagatgattacccaccttcctctctgctcaat 124 | ||| |||| || || || ||||| ||||||||||| || |||||||| || ||||| Sbjct: 311 ctgagagggatgaatgtgcttaccaagagatgattactcatcttcctctttgttcaat 368
>dbj|AB006690.1| Hyoscyamus niger mRNA for spermidine synthase 1, complete cds Length = 1213 Score = 44.1 bits (22), Expect = 0.28 Identities = 76/94 (80%) Strand = Plus / Plus Query: 7 tggttttccagtcctccacctacgggaaggtgctcgtcctggatggggtgatccaggtga 66 ||||||||||||| || || || || |||||||| || ||||||| |||||||| | | Sbjct: 228 tggttttccagtcatcaacttatggaaaggtgcttgttttggatggtgtgatccaactta 287 Query: 67 ccgagcgggacgagtgcgcctaccaggagatgat 100 ||||| |||| || || || ||||| |||||||| Sbjct: 288 ccgagagggatgaatgtgcttaccaagagatgat 321 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 207 cagatcgacatctgcgagatcgacaagatggt 238 ||||||||||| || ||||| ||||||||||| Sbjct: 428 cagatcgacatatgtgagattgacaagatggt 459
>ref|XM_514381.1| PREDICTED: Pan troglodytes similar to mannan-binding lectin serine protease 2 isoform 1 precursor; MBL-associated plasma protein of 19 kD; small MBL-associated protein; MBL-associated protein MAp19 (LOC457943), mRNA Length = 2172 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 262 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 306
>gb|AY615399.1| Toxoplasma gondii splice factor gene, complete cds Length = 7000 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 cggcgacggcgtcgccttcct 331 ||||||||||||||||||||| Sbjct: 6036 cggcgacggcgtcgccttcct 6016
>gb|BC033106.1| Homo sapiens spermidine synthase, mRNA (cDNA clone MGC:45687 IMAGE:5420683), complete cds Length = 1225 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 246 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 290
>gb|BC000309.2| Homo sapiens spermidine synthase, mRNA (cDNA clone MGC:8422 IMAGE:2820975), complete cds Length = 1259 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 280 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 324
>gb|BT014416.1| Lycopersicon esculentum clone 133724F, mRNA sequence Length = 1353 Score = 42.1 bits (21), Expect = 1.1 Identities = 54/65 (83%) Strand = Plus / Plus Query: 84 gcctaccaggagatgattacccaccttcctctctgctcaatcaaggatccaaagaaggtc 143 ||||| ||||||||||| |||| |||||||| || |||||||| ||| |||||||| Sbjct: 686 gcctatcaggagatgatagcccatcttcctctttgttcaatcaaatctcctaagaaggtt 745 Query: 144 ctggt 148 ||||| Sbjct: 746 ctggt 750
>ref|NM_003132.2| Homo sapiens spermidine synthase (SRM), mRNA Length = 1273 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 314 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 358
>ref|XM_390425.1| Gibberella zeae PH-1 chromosome 1 SPEE_NEUCR Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY) (FG10249.1) partial mRNA Length = 885 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 66 accgagcgggacgagtgcgcctaccaggagatgattacccacctt 110 |||||||| || |||| | ||||||||||||||||| | |||||| Sbjct: 199 accgagcgtgatgagttctcctaccaggagatgattgctcacctt 243
>ref|XM_801758.1| Trypanosoma cruzi strain CL Brener spermidine synthase (Tc00.1047053510337.40) partial mRNA Length = 891 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 148 tcataggtggcggagacggcggcgttctgcgggaggt 184 |||| ||||| || ||||||||||| ||||||||||| Sbjct: 278 tcattggtggtggggacggcggcgtactgcgggaggt 314
>ref|XM_806179.1| Trypanosoma cruzi strain CL Brener spermidine synthase (Tc00.1047053510339.50) partial mRNA Length = 891 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 148 tcataggtggcggagacggcggcgttctgcgggaggt 184 |||| ||||| || ||||||||||| ||||||||||| Sbjct: 278 tcattggtggtggggacggcggcgtactgcgggaggt 314
>ref|XM_806632.1| Trypanosoma cruzi strain CL Brener spermidine synthase (Tc00.1047053503855.20) partial mRNA Length = 891 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 148 tcataggtggcggagacggcggcgttctgcgggaggt 184 |||| ||||| || ||||||||||| ||||||||||| Sbjct: 278 tcattggtggtggggacggcggcgtactgcgggaggt 314
>ref|XM_811778.1| Trypanosoma cruzi strain CL Brener spermidine synthase (Tc00.1047053504033.130) partial mRNA Length = 891 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 148 tcataggtggcggagacggcggcgttctgcgggaggt 184 |||| ||||| || ||||||||||| ||||||||||| Sbjct: 278 tcattggtggtggggacggcggcgtactgcgggaggt 314
>gb|AY335900.1| Lycopersicon esculentum putative spermine synthase (SPM1) mRNA, complete cds Length = 1162 Score = 42.1 bits (21), Expect = 1.1 Identities = 54/65 (83%) Strand = Plus / Plus Query: 84 gcctaccaggagatgattacccaccttcctctctgctcaatcaaggatccaaagaaggtc 143 ||||| ||||||||||| |||| |||||||| || |||||||| ||| |||||||| Sbjct: 371 gcctatcaggagatgatagcccatcttcctctttgttcaatcaaatctcctaagaaggtt 430 Query: 144 ctggt 148 ||||| Sbjct: 431 ctggt 435
>emb|AL109811.40|HSJ635E18 Human DNA sequence from clone RP4-635E18 on chromosome 1p36.11-36.31 Contains the TARDBP gene for TAR DNA binding protein, the MASP2 gene for mannan-binding lectin serine protease 2, the SRM gene for spermidine synthase, the PMSCL2 gene for 100kDa polymyositis/scleroderma autoantigen 2 (FLJ41371, FLJ36636, two novel genes (FLJ30609), the 3' end of the FRAP1 gene for FK506 binding protein 12-rapamycin associated protein 1 and a CpG island, complete sequence Length = 112769 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Minus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 55638 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 55594
>emb|Z67748.1|MMSPERSYN M.musculus spermidine synthase gene Length = 3915 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| || ||| |||| |||| | Sbjct: 977 acctacggcaacgtgctggttctggatggcgtcatccagtgtactgagagggatgagttc 1036 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 1037 tcctaccaggagatgat 1053
>gb|BC005566.1| Mus musculus spermidine synthase, mRNA (cDNA clone MGC:11495 IMAGE:3966710), complete cds Length = 1347 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| || ||| |||| |||| | Sbjct: 283 acctacggcaacgtgctggttctggatggcgtcatccagtgtactgagagggatgagttc 342 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 343 tcctaccaggagatgat 359
>emb|CR605847.1| full-length cDNA clone CS0DJ014YF19 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1229 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 287 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 331
>emb|CR604523.1| full-length cDNA clone CS0DC025YK10 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1118 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 192 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 236
>emb|CR603559.1| full-length cDNA clone CS0DL010YG18 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1226 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 282 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 326
>emb|CR590206.1| full-length cDNA clone CS0DL006YJ07 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1245 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 314 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 358
>dbj|AK146395.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:I730069K04 product:spermidine synthase, full insert sequence Length = 1278 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| || ||| |||| |||| | Sbjct: 236 acctacggcaacgtgctggttctggatggcgtcatccagtgtactgagagggatgagttc 295 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 296 tcctaccaggagatgat 312
>dbj|AK051101.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030071N02 product:spermidine synthase, full insert sequence Length = 1304 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| || ||| |||| |||| | Sbjct: 275 acctacggcaacgtgctggttctggatggcgtcatccagtgtactgagagggatgagttc 334 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 335 tcctaccaggagatgat 351
>dbj|AK028359.1| Mus musculus 18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830422I15 product:spermidine synthase, full insert sequence Length = 1322 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| || ||| |||| |||| | Sbjct: 290 acctacggcaacgtgctggttctggatggcgtcatccagtgtactgagagggatgagttc 349 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 350 tcctaccaggagatgat 366
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gtggcggagacggcggcgttc 174 ||||||||||||||||||||| Sbjct: 6407741 gtggcggagacggcggcgttc 6407721
>dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0638H11 Length = 162746 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gtggcggagacggcggcgttc 174 ||||||||||||||||||||| Sbjct: 74685 gtggcggagacggcggcgttc 74665
>dbj|AK108462.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-D09, full insert sequence Length = 755 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 85 cctaccaggagatgattacccacct 109 |||||||||||||||| |||||||| Sbjct: 26 cctaccaggagatgatcacccacct 50
>dbj|AK070214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045L17, full insert sequence Length = 854 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gtggcggagacggcggcgttc 174 ||||||||||||||||||||| Sbjct: 299 gtggcggagacggcggcgttc 319
>gb|AF043109.1|AF043109 Pisum sativum spermidine synthase 2 (SPDSYN2) mRNA, complete cds Length = 1279 Score = 42.1 bits (21), Expect = 1.1 Identities = 42/49 (85%) Strand = Plus / Plus Query: 73 gggacgagtgcgcctaccaggagatgattacccaccttcctctctgctc 121 ||||||| || |||||||| || ||||| || || |||||||||||||| Sbjct: 370 gggacgaatgtgcctaccaagaaatgatcactcatcttcctctctgctc 418
>gb|L19311.1|MUSSPSYN Mouse spermidine synthase mRNA, complete cds Length = 1282 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| || ||| |||| |||| | Sbjct: 247 acctacggcaacgtgctggttctggatggcgtcatccagtgtactgagagggatgagttc 306 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 307 tcctaccaggagatgat 323
>ref|NM_009272.2| Mus musculus spermidine synthase (Srm), mRNA Length = 1347 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| || ||| |||| |||| | Sbjct: 283 acctacggcaacgtgctggttctggatggcgtcatccagtgtactgagagggatgagttc 342 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 343 tcctaccaggagatgat 359
>emb|AL591032.19| Mouse DNA sequence from clone RP22-211A10 on chromosome 4, complete sequence Length = 205573 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| || ||| |||| |||| | Sbjct: 79443 acctacggcaacgtgctggttctggatggcgtcatccagtgtactgagagggatgagttc 79502 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 79503 tcctaccaggagatgat 79519
>gb|M64231.1|HUMSPERSYN Human spermidine synthase gene, complete cds Length = 7623 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 2050 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 2094
>emb|AL606969.26| Mouse DNA sequence from clone RP23-331P21 on chromosome 4, complete sequence Length = 224344 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Plus Query: 24 acctacgggaaggtgctcgtcctggatggggtgatccaggtgaccgagcgggacgagtgc 83 |||||||| || ||||| || |||||||| || |||||| || ||| |||| |||| | Sbjct: 12030 acctacggcaacgtgctggttctggatggcgtcatccagtgtactgagagggatgagttc 12089 Query: 84 gcctaccaggagatgat 100 |||||||||||||||| Sbjct: 12090 tcctaccaggagatgat 12106
>gb|M34338.1|HUMSPERSYO Human spermidine synthase mRNA, complete cds Length = 1238 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 75 gacgagtgcgcctaccaggagatgattacccaccttcctctctgc 119 ||||||| | |||||||||||||||| || |||| ||||||||| Sbjct: 305 gacgagttctcctaccaggagatgatcgccaacctgcctctctgc 349
>ref|NM_202171.1| Arabidopsis thaliana SPDS1 (SPERMIDINE SYNTHASE 1) AT1G23820 (SPDS1) transcript variant AT1G23820.2 mRNA, complete cds Length = 1347 Score = 40.1 bits (20), Expect = 4.4 Identities = 77/96 (80%) Strand = Plus / Plus Query: 204 gagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttc 263 |||||||| ||||| || || || || || ||||||||||| ||||| ||||| || ||| Sbjct: 556 gagcagattgacatgtgtgaaattgataaaatggtggtcgacgtgtctaagcaatttttc 615 Query: 264 cctcatctggccctcgggtttgaggatcctcgcgtg 299 ||| || | || | || | |||||||||||||||| Sbjct: 616 cctgatgtagcaattggatatgaggatcctcgcgtg 651
>ref|NM_102230.3| Arabidopsis thaliana SPDS1 (SPERMIDINE SYNTHASE 1) AT1G23820 (SPDS1) transcript variant AT1G23820.1 mRNA, complete cds Length = 1359 Score = 40.1 bits (20), Expect = 4.4 Identities = 77/96 (80%) Strand = Plus / Plus Query: 204 gagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttc 263 |||||||| ||||| || || || || || ||||||||||| ||||| ||||| || ||| Sbjct: 556 gagcagattgacatgtgtgaaattgataaaatggtggtcgacgtgtctaagcaatttttc 615 Query: 264 cctcatctggccctcgggtttgaggatcctcgcgtg 299 ||| || | || | || | |||||||||||||||| Sbjct: 616 cctgatgtagcaattggatatgaggatcctcgcgtg 651
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ctctgctcaatcaaggatcc 133 |||||||||||||||||||| Sbjct: 1215535 ctctgctcaatcaaggatcc 1215516
>ref|XM_878626.1| PREDICTED: Bos taurus similar to spermidine synthase, transcript variant 3 (LOC505916), mRNA Length = 1354 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 gggacgagtgcgcctaccaggagatgat 100 ||||||||| | |||||||||||||||| Sbjct: 311 gggacgagttctcctaccaggagatgat 338
>ref|XM_582280.2| PREDICTED: Bos taurus similar to spermidine synthase, transcript variant 1 (LOC505916), mRNA Length = 1263 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 gggacgagtgcgcctaccaggagatgat 100 ||||||||| | |||||||||||||||| Sbjct: 311 gggacgagttctcctaccaggagatgat 338
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atgtgctggttttccagtcc 20 |||||||||||||||||||| Sbjct: 2953141 atgtgctggttttccagtcc 2953160
>gb|AY646352.1| Cucumis sativus spermidine synthase mRNA, complete cds Length = 1398 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 93 gagatgattacccaccttcctctctgctcaat 124 |||||||| ||||||||||| || |||||||| Sbjct: 348 gagatgatcacccaccttccgctttgctcaat 379
>gb|AC148137.3| Callicebus moloch clone LB5-202I8, complete sequence Length = 150353 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ctctgctcaatcaaggatcc 133 |||||||||||||||||||| Sbjct: 136918 ctctgctcaatcaaggatcc 136899
>gb|AF321139.1| Nicotiana tabacum spermidine synthase mRNA, complete cds Length = 1272 Score = 40.1 bits (20), Expect = 4.4 Identities = 53/64 (82%) Strand = Plus / Plus Query: 175 tgcgggaggtctcacggcactcctcggtggagcagatcgacatctgcgagatcgacaaga 234 |||| ||||| ||||| || || || || |||||||| ||||| || ||||| ||||||| Sbjct: 371 tgcgtgaggtgtcacgtcattcttctgtcgagcagattgacatatgtgagattgacaaga 430 Query: 235 tggt 238 |||| Sbjct: 431 tggt 434
>ref|XM_747626.1| Aspergillus fumigatus Af293 spermidine synthase (Afu1g13490) partial mRNA Length = 882 Score = 40.1 bits (20), Expect = 4.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 66 accgagcgggacgagtgcgcctaccaggagatgattacccacct 109 ||||||||||| |||| | | |||||||||||||| || ||||| Sbjct: 193 accgagcgggatgagttctcgtaccaggagatgatcactcacct 236
>emb|AJ251296.1|ATH251296 Arabidopsis thaliana mRNA for spermidine synthase 1 (spdSyn1 gene) Length = 1218 Score = 40.1 bits (20), Expect = 4.4 Identities = 77/96 (80%) Strand = Plus / Plus Query: 204 gagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttc 263 |||||||| ||||| || || || || || ||||||||||| ||||| ||||| || ||| Sbjct: 490 gagcagattgacatgtgtgaaattgataaaatggtggtcgacgtgtctaagcaatttttc 549 Query: 264 cctcatctggccctcgggtttgaggatcctcgcgtg 299 ||| || | || | || | |||||||||||||||| Sbjct: 550 cctgatgtagcaattggatatgaggatcctcgcgtg 585
>gb|AY093360.1| Arabidopsis thaliana strong similarity to spermidine synthase (At1g23820) mRNA, complete cds Length = 1125 Score = 40.1 bits (20), Expect = 4.4 Identities = 77/96 (80%) Strand = Plus / Plus Query: 204 gagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttc 263 |||||||| ||||| || || || || || ||||||||||| ||||| ||||| || ||| Sbjct: 433 gagcagattgacatgtgtgaaattgataaaatggtggtcgacgtgtctaagcaatttttc 492 Query: 264 cctcatctggccctcgggtttgaggatcctcgcgtg 299 ||| || | || | || | |||||||||||||||| Sbjct: 493 cctgatgtagcaattggatatgaggatcctcgcgtg 528
>gb|AY062593.1| Arabidopsis thaliana Strong similarity to spermidine synthase (At1g23820; F5O8.38) mRNA, complete cds Length = 1258 Score = 40.1 bits (20), Expect = 4.4 Identities = 77/96 (80%) Strand = Plus / Plus Query: 204 gagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttc 263 |||||||| ||||| || || || || || ||||||||||| ||||| ||||| || ||| Sbjct: 501 gagcagattgacatgtgtgaaattgataaaatggtggtcgacgtgtctaagcaatttttc 560 Query: 264 cctcatctggccctcgggtttgaggatcctcgcgtg 299 ||| || | || | || | |||||||||||||||| Sbjct: 561 cctgatgtagcaattggatatgaggatcctcgcgtg 596
>gb|AC146885.3| Callithrix jacchus clone CH259-349L5, complete sequence Length = 213940 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ctctgctcaatcaaggatcc 133 |||||||||||||||||||| Sbjct: 60627 ctctgctcaatcaaggatcc 60608
>emb|AL114430.1|CNS01BMU Botrytis cinerea strain T4 cDNA library Length = 660 Score = 40.1 bits (20), Expect = 4.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 132 ccaaagaaggtcctggtcataggtggcggaga 163 |||||||||||| ||||||| ||||| ||||| Sbjct: 329 ccaaagaaggtcttggtcattggtggaggaga 360
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 cggcgacggcgtcgccttcc 330 |||||||||||||||||||| Sbjct: 24950474 cggcgacggcgtcgccttcc 24950455
>emb|BX814923.1|CNS0ABBK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS19ZC12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1259 Score = 40.1 bits (20), Expect = 4.4 Identities = 77/96 (80%) Strand = Plus / Plus Query: 204 gagcagatcgacatctgcgagatcgacaagatggtggtcgatgtgtccaagcagttcttc 263 |||||||| ||||| || || || || || ||||||||||| ||||| ||||| || ||| Sbjct: 489 gagcagattgacatgtgtgaaattgataaaatggtggtcgacgtgtctaagcaatttttc 548 Query: 264 cctcatctggccctcgggtttgaggatcctcgcgtg 299 ||| || | || | || | |||||||||||||||| Sbjct: 549 cctgatgtagcaattggatatgaggatcctcgcgtg 584
>gb|AC004395.1|AC004395 Emericella nidulans Chromosome VIII Cosmid Clone 30b1, complete sequence Length = 37312 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ctaccaggagatgattacccacct 109 ||||||||| |||||||||||||| Sbjct: 6892 ctaccaggaaatgattacccacct 6915
>gb|AC005299.1|AC005299 emericella nidulans chromosome viii cosmid 2h2 containing spermidine synthase, complete sequence Length = 40554 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 ctaccaggagatgattacccacct 109 ||||||||| |||||||||||||| Sbjct: 25978 ctaccaggaaatgattacccacct 25955
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cggcgtcgccttcctgaaga 336 |||||||||||||||||||| Sbjct: 4372066 cggcgtcgccttcctgaaga 4372085
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 acatcggcgacggcgtcgcc 326 |||||||||||||||||||| Sbjct: 612579 acatcggcgacggcgtcgcc 612560
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 cggcgacggcgtcgccttcc 330 |||||||||||||||||||| Sbjct: 24878680 cggcgacggcgtcgccttcc 24878661
>emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132741 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 cggcgacggcgtcgccttcc 330 |||||||||||||||||||| Sbjct: 14394 cggcgacggcgtcgccttcc 14413
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ctctgctcaatcaaggatcc 133 |||||||||||||||||||| Sbjct: 1202855 ctctgctcaatcaaggatcc 1202836
>gb|AY050641.1| Aspergillus nidulans spermidine synthase gene, complete cds Length = 2249 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ctaccaggagatgattacccacct 109 ||||||||| |||||||||||||| Sbjct: 778 ctaccaggaaatgattacccacct 801 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,352,316 Number of Sequences: 3902068 Number of extensions: 2352316 Number of successful extensions: 50394 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 49927 Number of HSP's gapped (non-prelim): 467 length of query: 336 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 314 effective length of database: 17,147,199,772 effective search space: 5384220728408 effective search space used: 5384220728408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)