ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17a23 |
|---|---|
| Clone Library Name | barley_pub |
>RL36A_ARATH (O80929) 60S ribosomal protein L36-1| Length = 113 Score = 50.8 bits (120), Expect(2) = 2e-15 Identities = 25/31 (80%), Positives = 25/31 (80%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EVAG PY K ITELLK GKDKRALKVAK K Sbjct: 49 EVAGMAPYEKRITELLKVGKDKRALKVAKRK 79 Score = 48.9 bits (115), Expect(2) = 2e-15 Identities = 23/26 (88%), Positives = 25/26 (96%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMRS 172 +RKLGTHKRA +KREEMSSVLRKMRS Sbjct: 77 KRKLGTHKRAKRKREEMSSVLRKMRS 102
>RL36_DAUCA (P52866) 60S ribosomal protein L36| Length = 106 Score = 78.6 bits (192), Expect = 4e-15 Identities = 39/53 (73%), Positives = 42/53 (79%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEKAWYSQESXEEERGDVKCPEEDE 168 EVAGF PY K ITELLK GKDKRALKV +EK +SQES EEERGDV+C DE Sbjct: 49 EVAGFXPYEKRITELLKVGKDKRALKVRQEKVGHSQESKEEERGDVQCSPPDE 101
>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2| Length = 112 Score = 49.7 bits (117), Expect(2) = 5e-15 Identities = 25/31 (80%), Positives = 25/31 (80%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EVAG PY K ITELLK GKDKRALKVAK K Sbjct: 49 EVAGQAPYEKRITELLKVGKDKRALKVAKRK 79 Score = 48.9 bits (115), Expect(2) = 5e-15 Identities = 23/26 (88%), Positives = 25/26 (96%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMRS 172 +RKLGTHKRA +KREEMSSVLRKMRS Sbjct: 77 KRKLGTHKRAKRKREEMSSVLRKMRS 102
>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3| Length = 108 Score = 49.7 bits (117), Expect(2) = 5e-15 Identities = 25/31 (80%), Positives = 25/31 (80%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EVAG PY K ITELLK GKDKRALKVAK K Sbjct: 45 EVAGQAPYEKRITELLKVGKDKRALKVAKRK 75 Score = 48.9 bits (115), Expect(2) = 5e-15 Identities = 23/26 (88%), Positives = 25/26 (96%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMRS 172 +RKLGTHKRA +KREEMSSVLRKMRS Sbjct: 73 KRKLGTHKRAKRKREEMSSVLRKMRS 98
>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36| Length = 101 Score = 44.7 bits (104), Expect(2) = 4e-11 Identities = 20/31 (64%), Positives = 24/31 (77%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EVAG+ PY + + ELLK GKDKRALK+ K K Sbjct: 43 EVAGWAPYERRVMELLKVGKDKRALKMCKRK 73 Score = 40.8 bits (94), Expect(2) = 4e-11 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMRS 172 +RKLGTH R KKREEM+ VLRKM++ Sbjct: 71 KRKLGTHMRGKKKREEMAGVLRKMQA 96
>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36| Length = 104 Score = 39.3 bits (90), Expect(2) = 2e-07 Identities = 18/31 (58%), Positives = 21/31 (67%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EV GF PY + ELLK KDKRALK K++ Sbjct: 45 EVCGFAPYERRAMELLKVSKDKRALKFIKKR 75 Score = 33.9 bits (76), Expect(2) = 2e-07 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMR 169 ++++GTH RA +KREE+S+VL MR Sbjct: 73 KKRVGTHIRAKRKREELSNVLAAMR 97
>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36| Length = 104 Score = 39.3 bits (90), Expect(2) = 2e-07 Identities = 18/31 (58%), Positives = 21/31 (67%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EV GF PY + ELLK KDKRALK K++ Sbjct: 45 EVCGFAPYERRAMELLKVSKDKRALKFIKKR 75 Score = 33.9 bits (76), Expect(2) = 2e-07 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMR 169 ++++GTH RA +KREE+S+VL MR Sbjct: 73 KKRVGTHIRAKRKREELSNVLAAMR 97
>RL36_BOVIN (Q3T171) 60S ribosomal protein L36| Length = 104 Score = 39.3 bits (90), Expect(2) = 2e-07 Identities = 18/31 (58%), Positives = 21/31 (67%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EV GF PY + ELLK KDKRALK K++ Sbjct: 45 EVCGFAPYERRAMELLKVSKDKRALKFIKKR 75 Score = 33.9 bits (76), Expect(2) = 2e-07 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMR 169 ++++GTH RA +KREE+S+VL MR Sbjct: 73 KKRVGTHIRAKRKREELSNVLAAMR 97
>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)| Length = 115 Score = 37.4 bits (85), Expect(2) = 2e-07 Identities = 18/31 (58%), Positives = 19/31 (61%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EV G PY K ELLK KDKRALK K + Sbjct: 56 EVVGHAPYEKRTMELLKVSKDKRALKFLKRR 86 Score = 35.4 bits (80), Expect(2) = 2e-07 Identities = 14/25 (56%), Positives = 22/25 (88%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMR 169 +R+LGTH RA +KREE+S++L ++R Sbjct: 84 KRRLGTHIRAKRKREELSNILTQLR 108
>RL36_RAT (P39032) 60S ribosomal protein L36| Length = 104 Score = 37.0 bits (84), Expect(2) = 8e-07 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EV F PY + ELLK KDKRALK K++ Sbjct: 45 EVCAFAPYERRAMELLKVSKDKRALKFIKKR 75 Score = 33.9 bits (76), Expect(2) = 8e-07 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMR 169 ++++GTH RA +KREE+S+VL MR Sbjct: 73 KKRVGTHIRAKRKREELSNVLAAMR 97
>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)| Length = 99 Score = 33.9 bits (76), Expect(2) = 2e-05 Identities = 14/31 (45%), Positives = 22/31 (70%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EVAG PY + + EL++ +KRA K+AK++ Sbjct: 45 EVAGLAPYERRLIELIRNAGEKRAKKLAKKR 75 Score = 32.3 bits (72), Expect(2) = 2e-05 Identities = 13/25 (52%), Positives = 20/25 (80%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMR 169 +++LGTHKRA +K EEM+ V+ + R Sbjct: 73 KKRLGTHKRALRKVEEMTQVIAESR 97
>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)| Length = 105 Score = 39.3 bits (90), Expect = 0.003 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EVAG PY + + ELL+ KDKRA K+AK++ Sbjct: 50 EVAGLAPYERRVIELLRNSKDKRARKLAKKR 80
>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B| Length = 99 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/31 (51%), Positives = 24/31 (77%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EVAGF PY + + EL++ +DKRA K+AK++ Sbjct: 44 EVAGFAPYERRVMELIRNSQDKRARKLAKKR 74 Score = 27.7 bits (60), Expect = 8.8 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +2 Query: 47 LSFLRXERTSVHSRSPRRKLGTHKRAXKKREEMSSVLRKMR 169 + +R + + +++LGT KRA K EE++SV++ R Sbjct: 56 MELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A| Length = 99 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/31 (51%), Positives = 24/31 (77%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EVAGF PY + + EL++ +DKRA K+AK++ Sbjct: 44 EVAGFAPYERRVMELIRNSQDKRARKLAKKR 74 Score = 27.7 bits (60), Expect = 8.8 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +2 Query: 47 LSFLRXERTSVHSRSPRRKLGTHKRAXKKREEMSSVLRKMR 169 + +R + + +++LGT KRA K EE++SV++ R Sbjct: 56 MELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>RL36_CAEEL (P49181) 60S ribosomal protein L36| Length = 103 Score = 38.1 bits (87), Expect = 0.007 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 E+ GF PY + + E+L+ KDKRALK K + Sbjct: 47 EITGFAPYERRVLEMLRISKDKRALKFLKRR 77 Score = 32.0 bits (71), Expect = 0.47 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +2 Query: 47 LSFLRXERTSVHSRSPRRKLGTHKRAXKKREEMSSVLRKMR 169 L LR + + +R++GTH+RA KREE+ +V+ R Sbjct: 59 LEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 99
>RL36_MOUSE (P47964) 60S ribosomal protein L36| Length = 104 Score = 37.0 bits (84), Expect = 0.015 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 EV GF PY + ELLK K KRALK K++ Sbjct: 45 EVCGFAPYERRAMELLKVSKSKRALKFIKKR 75 Score = 32.3 bits (72), Expect = 0.36 Identities = 14/41 (34%), Positives = 27/41 (65%) Frame = +2 Query: 44 SLSFLRXERTSVHSRSPRRKLGTHKRAXKKREEMSSVLRKM 166 ++ L+ ++ + ++++GTH RA +KREE+S+VL M Sbjct: 56 AMELLKVSKSKRALKFIKKRVGTHIRAKRKREELSNVLAAM 96
>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)| Length = 99 Score = 32.7 bits (73), Expect(2) = 0.017 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 E+AG PY + + +L++ +KRA KVAK++ Sbjct: 45 EIAGLSPYERRLIDLIRNSGEKRARKVAKKR 75 Score = 23.1 bits (48), Expect(2) = 0.017 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMR 169 +++LG+ RA K EEM++++ R Sbjct: 73 KKRLGSFTRAKAKVEEMNNIIAASR 97
>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)| Length = 99 Score = 32.7 bits (73), Expect(2) = 0.017 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = +1 Query: 10 EVAGFVPYXKXITELLKXGKDKRALKVAKEK 102 E+AG PY + + +L++ +KRA KVAK++ Sbjct: 45 EIAGLSPYERRLIDLIRNSGEKRARKVAKKR 75 Score = 23.1 bits (48), Expect(2) = 0.017 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = +2 Query: 95 RRKLGTHKRAXKKREEMSSVLRKMR 169 +++LG+ RA K EEM++++ R Sbjct: 73 KKRLGSFTRAKAKVEEMNNIIAASR 97
>MSC3_ASHGO (Q74ZL3) Meiotic sister-chromatid recombination protein 3| Length = 751 Score = 27.7 bits (60), Expect = 8.8 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 76 RALKVAKEKAWYSQESXEEERGDVKCP 156 +AL+VAK+K +QE+ + G +CP Sbjct: 419 KALEVAKKKYHLTQENSTRDNGTTECP 445 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,888,462 Number of Sequences: 219361 Number of extensions: 198836 Number of successful extensions: 782 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 743 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 779 length of database: 80,573,946 effective HSP length: 34 effective length of database: 73,115,672 effective search space used: 1754776128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
