ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16l12 |
|---|---|
| Clone Library Name | barley_pub |
>MTHR1_ARATH (Q9SE60) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| (AtMTHFR1) Length = 592 Score = 71.2 bits (173), Expect(2) = 2e-16 Identities = 34/57 (59%), Positives = 42/57 (73%) Frame = +2 Query: 5 GGFSXALXLVQHIRAKXGDYFGITXAGYPEAHPEVILGEDGATEEAYSTRSCLLEEK 175 GGF+ AL LV HIR+K GDYFGIT AGYPEAHP+VI + AT E+Y + L++K Sbjct: 126 GGFACALDLVNHIRSKYGDYFGITVAGYPEAHPDVIEADGLATPESYQSDLAYLKKK 182 Score = 32.3 bits (72), Expect(2) = 2e-16 Identities = 14/16 (87%), Positives = 16/16 (100%) Frame = +3 Query: 153 DLAYLKRKVDAGADVI 200 DLAYLK+KVDAGAD+I Sbjct: 175 DLAYLKKKVDAGADLI 190
>MTHR1_MAIZE (Q9SE94) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| (ZmMTHFR1) Length = 593 Score = 81.6 bits (200), Expect = 5e-16 Identities = 40/57 (70%), Positives = 43/57 (75%) Frame = +2 Query: 5 GGFSXALXLVQHIRAKXGDYFGITXAGYPEAHPEVILGEDGATEEAYSTRSCLLEEK 175 GGF+ AL LVQHIRAK GDYFGIT AGYPEAHP+ I GE GAT EAYS L+ K Sbjct: 126 GGFACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQGEGGATLEAYSNDLAYLKRK 182 Score = 33.9 bits (76), Expect = 0.12 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = +3 Query: 147 AQDLAYLKRKVDAGADVI 200 + DLAYLKRKVDAGAD+I Sbjct: 173 SNDLAYLKRKVDAGADLI 190
>MTHR_ORYSA (Q75HE6) Probable methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 594 Score = 81.3 bits (199), Expect = 7e-16 Identities = 39/58 (67%), Positives = 44/58 (75%) Frame = +2 Query: 2 AGGFSXALXLVQHIRAKXGDYFGITXAGYPEAHPEVILGEDGATEEAYSTRSCLLEEK 175 AGGF+ AL LVQHIRAK GDYFGIT AGYPEAHP+ I +GAT EAYS L++K Sbjct: 125 AGGFACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQSTEGATPEAYSNDLAYLKQK 182 Score = 32.3 bits (72), Expect = 0.35 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = +3 Query: 147 AQDLAYLKRKVDAGADVI 200 + DLAYLK+KVDAGAD+I Sbjct: 173 SNDLAYLKQKVDAGADLI 190
>MTHR2_ARATH (O80585) Methylenetetrahydrofolate reductase 2 (EC 1.5.1.20)| (AtMTHFR2) Length = 594 Score = 69.3 bits (168), Expect(2) = 3e-15 Identities = 37/58 (63%), Positives = 44/58 (75%), Gaps = 1/58 (1%) Frame = +2 Query: 5 GGFSXALXLVQHIRAKXGDYFGITXAGYPEAHPEVILGEDG-ATEEAYSTRSCLLEEK 175 GGF AL LV HIR+K GDYFGIT AGYPEAHP+VI GE+G A+ EAY + L++K Sbjct: 126 GGFDCALDLVNHIRSKYGDYFGITVAGYPEAHPDVI-GENGLASNEAYQSDLEYLKKK 182 Score = 30.0 bits (66), Expect(2) = 3e-15 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = +3 Query: 153 DLAYLKRKVDAGADVI 200 DL YLK+K+DAGAD+I Sbjct: 175 DLEYLKKKIDAGADLI 190
>MTHR_HUMAN (P42898) Methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 656 Score = 50.8 bits (120), Expect = 9e-07 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = +2 Query: 5 GGFSXALXLVQHIRAKXGDYFGITXAGYPEAHPE 106 GGF+ A+ LV+HIR++ GDYF I AGYP+ HPE Sbjct: 170 GGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPE 203
>MTHR_MACFA (Q60HE5) Methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 656 Score = 50.1 bits (118), Expect = 2e-06 Identities = 20/34 (58%), Positives = 27/34 (79%) Frame = +2 Query: 5 GGFSXALXLVQHIRAKXGDYFGITXAGYPEAHPE 106 GGF+ A+ LV+HIR++ GDYF + AGYP+ HPE Sbjct: 170 GGFNYAVDLVKHIRSEFGDYFDLCVAGYPKGHPE 203
>MTHR_MOUSE (Q9WU20) Methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 654 Score = 48.1 bits (113), Expect = 6e-06 Identities = 22/40 (55%), Positives = 25/40 (62%) Frame = +2 Query: 5 GGFSXALXLVQHIRAKXGDYFGITXAGYPEAHPEVILGED 124 GGFS A LV+HIR + DYF I AGYP HP+ ED Sbjct: 169 GGFSYATDLVKHIRTEFADYFDICVAGYPRGHPDAESFED 208
>MTHR2_YEAST (P53128) Methylenetetrahydrofolate reductase 2 (EC 1.5.1.20)| Length = 599 Score = 47.0 bits (110), Expect = 1e-05 Identities = 19/35 (54%), Positives = 26/35 (74%) Frame = +2 Query: 5 GGFSXALXLVQHIRAKXGDYFGITXAGYPEAHPEV 109 GGF A L+++I++K GD+F I AGYPE HPE+ Sbjct: 129 GGFQYAKDLIKYIKSKYGDHFAIGVAGYPECHPEL 163
>MTHR1_YEAST (P46151) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| Length = 657 Score = 31.6 bits (70), Expect(2) = 0.002 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 11 FSXALXLVQHIRAKXGDYFGITXAGYPEAHPE 106 F A+ LV++I+ GD F + A YPE H E Sbjct: 127 FKYAVDLVRYIKQSYGDKFCVGVAAYPEGHCE 158 Score = 27.7 bits (60), Expect(2) = 0.002 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +3 Query: 150 QDLAYLKRKVDAGADVI 200 +DL YLK KV+AGAD + Sbjct: 170 KDLVYLKEKVEAGADFV 186
>MTHR_CAEEL (Q17693) Probable methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 663 Score = 34.3 bits (77), Expect(2) = 0.003 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +2 Query: 20 ALXLVQHIRAKXGDYFGITXAGYPEAHPE 106 AL +++ IR + G+YF I AGYP HP+ Sbjct: 188 ALDMIRWIREEYGNYFSIGCAGYPLGHPQ 216 Score = 24.3 bits (51), Expect(2) = 0.003 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +3 Query: 153 DLAYLKRKVDAGADVI 200 DL YLK K DAGA+ + Sbjct: 223 DLMYLKAKCDAGANFV 238
>METF_AQUAE (O67422) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 296 Score = 36.6 bits (83), Expect(2) = 0.003 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = +2 Query: 5 GGFSXALXLVQHIRAKXGDYFGITXAGYPEAHPE 106 G A LV+ IR + GD+F I A YPE HPE Sbjct: 122 GACKYAKELVELIRKEFGDWFSIGVASYPEGHPE 155 Score = 21.9 bits (45), Expect(2) = 0.003 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +3 Query: 153 DLAYLKRKVDAGAD 194 ++ Y K KV+AGAD Sbjct: 162 EVKYFKEKVEAGAD 175
>MTHR2_SCHPO (O74927) Methylenetetrahydrofolate reductase 2 (EC 1.5.1.20)| Length = 641 Score = 37.7 bits (86), Expect = 0.008 Identities = 17/30 (56%), Positives = 20/30 (66%) Frame = +2 Query: 11 FSXALXLVQHIRAKXGDYFGITXAGYPEAH 100 F A+ LV++IR K GDYF I A YPE H Sbjct: 128 FEHAVDLVRYIREKYGDYFCIGVAAYPEGH 157
>MTHR1_SCHPO (Q10258) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| Length = 603 Score = 30.8 bits (68), Expect(2) = 0.071 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +2 Query: 8 GFSXALXLVQHIRAKXGDYFGITXAGYPEAH 100 GF A LV++IR D F I AGYPE + Sbjct: 127 GFRYASDLVRYIRTHYNDEFCIGVAGYPEGY 157 Score = 22.7 bits (47), Expect(2) = 0.071 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 144 IAQDLAYLKRKVDAGADVI 200 I + + +LK KVD GAD I Sbjct: 163 IDESIKHLKLKVDEGADFI 181
>METF_SHIFL (P0AEZ2) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 296 Score = 25.0 bits (53), Expect(2) = 0.92 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 132 QRKHIAQDLAYLKRKVDAGAD 194 + K DL LKRKVDAGA+ Sbjct: 158 EAKSAQADLLNLKRKVDAGAN 178 Score = 24.6 bits (52), Expect(2) = 0.92 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 Query: 65 FGITXAGYPEAHPE 106 F I+ A YPE HPE Sbjct: 145 FDISVAAYPEVHPE 158
>METF_SALTY (P11003) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 296 Score = 25.0 bits (53), Expect(2) = 0.92 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 132 QRKHIAQDLAYLKRKVDAGAD 194 + K DL LKRKVDAGA+ Sbjct: 158 EAKSAQADLLNLKRKVDAGAN 178 Score = 24.6 bits (52), Expect(2) = 0.92 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 Query: 65 FGITXAGYPEAHPE 106 F I+ A YPE HPE Sbjct: 145 FDISVAAYPEVHPE 158
>METF_ECOLI (P0AEZ1) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 296 Score = 25.0 bits (53), Expect(2) = 0.92 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 132 QRKHIAQDLAYLKRKVDAGAD 194 + K DL LKRKVDAGA+ Sbjct: 158 EAKSAQADLLNLKRKVDAGAN 178 Score = 24.6 bits (52), Expect(2) = 0.92 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 Query: 65 FGITXAGYPEAHPE 106 F I+ A YPE HPE Sbjct: 145 FDISVAAYPEVHPE 158
>METF_BUCAI (P57154) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 292 Score = 25.4 bits (54), Expect(2) = 0.92 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 132 QRKHIAQDLAYLKRKVDAGA 191 + K++ D+ LK+KVDAGA Sbjct: 158 ESKNVKSDILNLKKKVDAGA 177 Score = 24.3 bits (51), Expect(2) = 0.92 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 Query: 65 FGITXAGYPEAHPE 106 F I+ A YPE HPE Sbjct: 145 FDISVAAYPELHPE 158
>METF_HAEIN (P45208) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 292 Score = 24.6 bits (52), Expect(2) = 1.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 132 QRKHIAQDLAYLKRKVDAGAD 194 + K DL LKRK+DAGA+ Sbjct: 156 EAKSAQADLINLKRKIDAGAN 176 Score = 24.6 bits (52), Expect(2) = 1.2 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 Query: 65 FGITXAGYPEAHPE 106 F I+ A YPE HPE Sbjct: 143 FDISVAAYPEVHPE 156
>METF_PECCC (P71319) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 298 Score = 24.6 bits (52), Expect(2) = 4.1 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 Query: 65 FGITXAGYPEAHPE 106 F I+ A YPE HPE Sbjct: 145 FDISVAAYPEVHPE 158 Score = 22.7 bits (47), Expect(2) = 4.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 132 QRKHIAQDLAYLKRKVDAGAD 194 + K DL LK K+DAGA+ Sbjct: 158 EAKSAQADLINLKHKIDAGAN 178
>MURB_SYNP7 (P95837) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 301 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 23 LXLVQHIRAKXGDYFGITXAGYPEAHPEV-ILGE 121 L L++H++ GD+FG+ HPEV +LGE Sbjct: 269 LSLIRHVQGTVGDHFGV------NLHPEVKLLGE 296
>MURB_SYNP6 (Q5MZH9) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 301 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 23 LXLVQHIRAKXGDYFGITXAGYPEAHPEV-ILGE 121 L L++H++ GD+FG+ HPEV +LGE Sbjct: 269 LSLIRHVQGTVGDHFGV------NLHPEVKLLGE 296
>METF_BUCBP (Q89B13) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 295 Score = 25.4 bits (54), Expect(2) = 5.3 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +2 Query: 65 FGITXAGYPEAHPEVI 112 F I+ A YPE HPE + Sbjct: 146 FEISVAAYPEVHPEAV 161 Score = 21.6 bits (44), Expect(2) = 5.3 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +3 Query: 153 DLAYLKRKVDAGA 191 D+ LKRKV+AGA Sbjct: 166 DIINLKRKVEAGA 178
>METF_BUCAP (Q8KA62) 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 292 Score = 24.3 bits (51), Expect(2) = 5.3 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 Query: 65 FGITXAGYPEAHPE 106 F I+ A YPE HPE Sbjct: 145 FDISVAAYPEIHPE 158 Score = 22.7 bits (47), Expect(2) = 5.3 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +3 Query: 132 QRKHIAQDLAYLKRKVDAGAD 194 + K+ D+ LK+K DAGA+ Sbjct: 158 ESKNAQSDILNLKKKADAGAN 178
>KIF4A_XENLA (Q91784) Chromosome-associated kinesin KLP1 (Chromokinesin)| Length = 1226 Score = 27.7 bits (60), Expect = 8.6 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +3 Query: 135 RKHIAQDLAYLKRKVDAG 188 RK +AQD+A LK+K DAG Sbjct: 774 RKILAQDIAQLKQKTDAG 791 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,626,297 Number of Sequences: 219361 Number of extensions: 285569 Number of successful extensions: 679 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 663 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 679 length of database: 80,573,946 effective HSP length: 42 effective length of database: 71,360,784 effective search space used: 1712658816 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
