ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd17a05 |
|---|---|
| Clone Library Name | barley_pub |
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 33.1 bits (74), Expect = 0.60 Identities = 27/91 (29%), Positives = 35/91 (38%) Frame = +2 Query: 86 RRRPSSDSVQLSRSRYSTSAGPISXXXXXXXXXXXXXXXVPHGGARRGRGKQP*PQNPEA 265 R RP D LSR S A PI+ RR R + ++P Sbjct: 413 RTRPRDDI--LSRRERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRR 470 Query: 266 DPRAARYPHFLSRRSASRGDKWTSSRAAIRE 358 R R L RRS SRG + SR+ ++E Sbjct: 471 RDRGRRSRSRLRRRSRSRGGRRRRSRSKVKE 501
>HPAB3_PSESM (Q2QCI9) Effector protein hopAB3 (Avirulence protein avrPtoB)| [Includes: E3 ubiquitin-protein ligase (EC 6.3.2.-)] Length = 579 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = +2 Query: 284 YPHFLSRRSASRGDKWTSSRAAIR------ESPAPPRAPALGTTATPRR 412 +PH L+ S + T+ RAA+R E+ APPR A + TP R Sbjct: 188 FPHLLAGELISGSELATAFRAALRREVRQQEASAPPRTAARSSVRTPER 236
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 31.2 bits (69), Expect = 2.3 Identities = 26/91 (28%), Positives = 34/91 (37%) Frame = +2 Query: 86 RRRPSSDSVQLSRSRYSTSAGPISXXXXXXXXXXXXXXXVPHGGARRGRGKQP*PQNPEA 265 R RP D L R S A PI+ RR R + ++P Sbjct: 413 RTRPRDDI--LGRCERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRR 470 Query: 266 DPRAARYPHFLSRRSASRGDKWTSSRAAIRE 358 R+ R L RRS SRG SR+ ++E Sbjct: 471 RDRSRRSKSRLRRRSRSRGGHRRRSRSKVKE 501
>SPY4_MOUSE (Q9WTP2) Sprouty homolog 4 (Spry-4)| Length = 300 Score = 30.8 bits (68), Expect = 3.0 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Frame = +2 Query: 206 PHGGARRGRGKQP*PQNPEADPRAAR--------YPHFLSRRSASRGDKWTSSRAAIRES 361 P G +R RG P E P AR + F R S+ TSS + + Sbjct: 61 PATGPKRPRGGPP-----ELAPTPARCDQDITHHWISFSGRPSSVSSSSSTSSDQRLLDH 115 Query: 362 PAPPRAPALGTTATPRRFLRRCKLEIHQPISLEGSLERVDLDKYMLV 502 APP + A+PR + K+ +P+ L+G +LDK+ L+ Sbjct: 116 MAPP---PVAEQASPRAVRLQPKVVHCKPLDLKGPTAPPELDKHFLL 159
>PAPPA_MOUSE (Q8R4K8) Pappalysin-1 precursor (EC 3.4.24.79)| (Pregnancy-associated plasma protein-A) (PAPP-A) (Insulin-like growth factor-dependent IGF-binding protein 4 protease) (IGF-dependent IGFBP-4 protease) (IGFBP-4ase) Length = 1624 Score = 30.4 bits (67), Expect = 3.9 Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 8/110 (7%) Frame = +2 Query: 218 ARRGRGKQP*PQNPEADPRAARYPHFLSRRSASRGDKWTSSRAAIRESPAPPRAPALGTT 397 A G G P+ DPRA R P R +A T + R SP PP A Sbjct: 15 AALGCGLAERPRRVRRDPRAVRPP----RPAAGPATCATRAARGRRASPPPPPGGAWEAV 70 Query: 398 ATPRRFLRRCKLEIHQP--------ISLEGSLERVDLDKYMLVDVFPLPV 523 PRR +R +P S G R+ D + D F L V Sbjct: 71 RVPRRRQQRAARGAEEPSPPSRALYFSGRGEQLRLRADLELPRDAFTLQV 120
>SPY4_HUMAN (Q9C004) Sprouty homolog 4 (Spry-4)| Length = 299 Score = 30.4 bits (67), Expect = 3.9 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 8/104 (7%) Frame = +2 Query: 215 GARRGRGKQP*PQNPEADPRAAR--------YPHFLSRRSASRGDKWTSSRAAIRESPAP 370 G +R RG P E P AR + F R S+ TSS + + AP Sbjct: 63 GPKRTRGGAP-----ELAPTPARCDQDVTHHWISFSGRPSSVSSSSSTSSDQRLLDHMAP 117 Query: 371 PRAPALGTTATPRRFLRRCKLEIHQPISLEGSLERVDLDKYMLV 502 P + A+PR + K+ QP+ L+G +LDK+ L+ Sbjct: 118 P---PVADQASPRAVRIQPKVVHCQPLDLKGPAVPPELDKHFLL 158
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 30.4 bits (67), Expect = 3.9 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Frame = -1 Query: 249 GYGCFPRPRRAP------PWGTGKPQRRSPMRXPGGNEIGPALVEYR 127 G G PRP+ P P G +PQ P PGGN P ++ R Sbjct: 267 GPGGAPRPQGGPGGARPTPGGMPRPQAPRPGGAPGGNRPNPGMMPQR 313
>RL4_SYNPX (Q7U4J9) 50S ribosomal protein L4| Length = 211 Score = 29.6 bits (65), Expect = 6.7 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = -1 Query: 207 GTGKPQR---RSPMRXPGGNEIGPALVEYRLRLSCTESELGLRRWM--RWSVTTGGEDTG 43 GTG+ ++ R+P+R GG GP Y L ++ E L LR + R T +D G Sbjct: 69 GTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARVEDVTVVKDFG 128 Query: 42 RSRXESKGKE 13 S K KE Sbjct: 129 TSLEAPKTKE 138
>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 521 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Frame = +1 Query: 187 PLRLASAPRWRAPRPWKAAVAA---ESGSRSTSREVS 288 P LAS RW PRP AA A E+ +R+ +RE + Sbjct: 312 PANLASHRRWHKPRPVPAAARAPEPEAATRAEAREAA 348
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 29.3 bits (64), Expect = 8.7 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Frame = +2 Query: 116 LSRSRYST-SAGPISXXXXXXXXXXXXXXXVPHGGARRGRG-KQP*PQNPEADPRAARYP 289 LS+SR S S G S +P+G + K P Q P + P++A Sbjct: 126 LSKSRTSKRSTGANSNTKTEIHLTNGNSRKMPNGSHKASPATKAPSKQAPASTPKSA--- 182 Query: 290 HFLSRRSASRGDKWTSSRAAIRESPAPPRAPALGT 394 S + TSSR+ R SP PP P T Sbjct: 183 ------SKKPTETRTSSRSTRRRSPTPPPPPKNST 211
>SNPC4_MOUSE (Q8BP86) snRNA-activating protein complex subunit 4 (SNAPc subunit| 4) (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) Length = 1333 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +2 Query: 269 PRAARYPHFLSRRSASRGDKWTSSRAAIRESPAPPRAPALGTTATP 406 PR R+ HF SAS D S ++E P P P+ + + P Sbjct: 636 PRGDRFLHFSDTHSASLKDPACKSHTLMKERPKQPLLPSSRSGSDP 681
>RL4_PROMA (Q7V9W3) 50S ribosomal protein L4| Length = 211 Score = 29.3 bits (64), Expect = 8.7 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%) Frame = -1 Query: 207 GTGKPQR---RSPMRXPGGNEIGPALVEYRLRLSCTESELGLRRWM--RWSVTTGGEDTG 43 GTG+ ++ R+P+R GG GP +Y L ++ E L LR + R++ +D G Sbjct: 69 GTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRLALRTALMARFNDVIAVKDFG 128 Query: 42 RSRXESKGKE 13 K KE Sbjct: 129 SKLKVPKTKE 138
>KIF23_HUMAN (Q02241) Kinesin-like protein KIF23 (Mitotic kinesin-like protein| 1) (Kinesin-like protein 5) Length = 856 Score = 29.3 bits (64), Expect = 8.7 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Frame = +2 Query: 302 RRSASRGDKWTSSRAAIR---ESPAPPRAP-ALGTTATPRRFLRRCK--LEIHQPISLEG 463 RRS S GD+W + A E+ P P A+ + + L +C+ + HQ ++ +G Sbjct: 706 RRSRSAGDRWVDHKPASNMQTETVMQPHVPHAITVSVANEKALAKCEKYMLTHQELASDG 765 Query: 464 SLE 472 +E Sbjct: 766 EIE 768
>LCMT2_NEUCR (Q9P3K9) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)| Length = 1213 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/78 (24%), Positives = 31/78 (39%) Frame = -1 Query: 255 FCGYGCFPRPRRAPPWGTGKPQRRSPMRXPGGNEIGPALVEYRLRLSCTESELGLRRWMR 76 F + C R R G K + R P G E+G + + ++R + G RR+ Sbjct: 440 FASHYCVVRARTVARDGQNKKKERG---IPNGRELGLPVEKVKVRWDDVPGQRGQRRFAA 496 Query: 75 WSVTTGGEDTGRSRXESK 22 +V T + + E K Sbjct: 497 GAVLTSSSPSSEKKEEVK 514
>INSM1_HUMAN (Q01101) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 510 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +1 Query: 187 PLRLASAPRWRAPRPWKAAVAA---ESGSRSTSRE 282 P LAS RW PRP AA A E+ +R+ +RE Sbjct: 307 PANLASHRRWHKPRPAPAAARAPEPEAAARAEARE 341
>CHI4_BRANA (Q06209) Basic endochitinase CHB4 precursor (EC 3.2.1.14)| Length = 268 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = -1 Query: 270 GSASGFCGYGCFPRPRRAPPWGTGKPQRRSPMRXPGGNEIGPALVE 133 GS +CG GC P R+ P GT P PGG +G + + Sbjct: 42 GSTDAYCGTGCRSGPCRS-PGGTPSP--------PGGGSVGSIVTQ 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,518,558 Number of Sequences: 219361 Number of extensions: 1284254 Number of successful extensions: 5288 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4981 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5280 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
