| Clone Name | basd17a02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475272.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 525 bits (265), Expect = e-146 Identities = 463/527 (87%), Gaps = 3/527 (0%) Strand = Plus / Plus Query: 50 attcccttggccaccacccatcctaagnatggattcctggctaggcaaccggnagnaagg 109 ||||||||||| |||| |||||||||| |||||| ||||||||||||| ||| | |||| Sbjct: 379 attcccttggcaaccagccatcctaag-atggatgcctggctaggcaatcggaa--aagg 435 Query: 110 atcatagtgatgaaccgcgaggacatggtgtcggccgacgacagaaatgcatgggcgact 169 |||||||| ||||| ||||| ||||||||||| || ||||||||||||||||| || Sbjct: 436 atcatagtcatgaatcgcgaagacatggtgtcaaatgaggacagaaatgcatgggcctct 495 Query: 170 tacttttctagtcagggtatcaaagttgtttactcaaatggacagctgggcatgggtacg 229 |||||| ||| |||||||| |||||||||||||||||| || ||||||||||||||||| Sbjct: 496 tactttgctaatcagggtaccaaagttgtttactcaaacgggcagctgggcatgggtaca 555 Query: 230 atgaaattaggaagaatggcgaaatcagcagcatctactgtgaacacaaagcgaagagaa 289 ||||||||||| || ||||| |||||| |||||||||||||||||||||||| ||||| Sbjct: 556 atgaaattaggtaggatggcaaaatcactagcatctactgtgaacacaaagcgcagagag 615 Query: 290 aagggattgcttcctcgtccggttcgggctggaattgttggatatccaaatgttggtaaa 349 ||||| || ||||||||| ||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 616 aaggggttacttcctcgtgcggttcgagctggaatagttggatatccaaatgttggcaaa 675 Query: 350 tcttccttgattaatcgcttgctaaaacgaagaatgtgtccagcagcacctagaccaggt 409 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 676 tcttccttaattaatcgcttgctaaaacgaagaatgtgtccagcagcgcctagaccaggt 735 Query: 410 gtcacaagagaactgaagtgggtgcgttttgggaaggatctagagctgttagactcgcct 469 || |||||||| ||||||||||| |||||||| | ||| ||||||| ||||| || ||| Sbjct: 736 gttacaagagagctgaagtgggttcgttttggaagtgatttagagctattagattcacct 795 Query: 470 ggaatattgccaatgagaattagtgatcagacagctgctcttaagcttgctatctgtgat 529 || || ||||||||| |||| ||||| ||||||||||| | || |||||||| |||||| Sbjct: 796 ggcattttgccaatgcgaataagtgaccagacagctgcaatcaaacttgctatatgtgat 855 Query: 530 gatatcggagaaagatcatatgattttgctgatgtggcagccattct 576 ||||| |||||||| || ||||| ||||||||||||||||| ||||| Sbjct: 856 gatataggagaaaggtcgtatgactttgctgatgtggcagcgattct 902
>dbj|AK063573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G09, full insert sequence Length = 1420 Score = 525 bits (265), Expect = e-146 Identities = 463/527 (87%), Gaps = 3/527 (0%) Strand = Plus / Plus Query: 50 attcccttggccaccacccatcctaagnatggattcctggctaggcaaccggnagnaagg 109 ||||||||||| |||| |||||||||| |||||| ||||||||||||| ||| | |||| Sbjct: 393 attcccttggcaaccagccatcctaag-atggatgcctggctaggcaatcggaa--aagg 449 Query: 110 atcatagtgatgaaccgcgaggacatggtgtcggccgacgacagaaatgcatgggcgact 169 |||||||| ||||| ||||| ||||||||||| || ||||||||||||||||| || Sbjct: 450 atcatagtcatgaatcgcgaagacatggtgtcaaatgaggacagaaatgcatgggcctct 509 Query: 170 tacttttctagtcagggtatcaaagttgtttactcaaatggacagctgggcatgggtacg 229 |||||| ||| |||||||| |||||||||||||||||| || ||||||||||||||||| Sbjct: 510 tactttgctaatcagggtaccaaagttgtttactcaaacgggcagctgggcatgggtaca 569 Query: 230 atgaaattaggaagaatggcgaaatcagcagcatctactgtgaacacaaagcgaagagaa 289 ||||||||||| || ||||| |||||| |||||||||||||||||||||||| ||||| Sbjct: 570 atgaaattaggtaggatggcaaaatcactagcatctactgtgaacacaaagcgcagagag 629 Query: 290 aagggattgcttcctcgtccggttcgggctggaattgttggatatccaaatgttggtaaa 349 ||||| || ||||||||| ||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 630 aaggggttacttcctcgtgcggttcgagctggaatagttggatatccaaatgttggcaaa 689 Query: 350 tcttccttgattaatcgcttgctaaaacgaagaatgtgtccagcagcacctagaccaggt 409 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 690 tcttccttaattaatcgcttgctaaaacgaagaatgtgtccagcagcgcctagaccaggt 749 Query: 410 gtcacaagagaactgaagtgggtgcgttttgggaaggatctagagctgttagactcgcct 469 || |||||||| ||||||||||| |||||||| | ||| ||||||| ||||| || ||| Sbjct: 750 gttacaagagagctgaagtgggttcgttttggaagtgatttagagctattagattcacct 809 Query: 470 ggaatattgccaatgagaattagtgatcagacagctgctcttaagcttgctatctgtgat 529 || || ||||||||| |||| ||||| ||||||||||| | || |||||||| |||||| Sbjct: 810 ggcattttgccaatgcgaataagtgaccagacagctgcaatcaaacttgctatatgtgat 869 Query: 530 gatatcggagaaagatcatatgattttgctgatgtggcagccattct 576 ||||| |||||||| || ||||| ||||||||||||||||| ||||| Sbjct: 870 gatataggagaaaggtcgtatgactttgctgatgtggcagcgattct 916
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 180 bits (91), Expect = 3e-42 Identities = 112/119 (94%) Strand = Plus / Minus Query: 310 ggttcgggctggaattgttggatatccaaatgttggtaaatcttccttgattaatcgctt 369 |||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 110531 ggttcgagctggaatagttggatatccaaatgttggcaaatcttccttaattaatcgctt 110472 Query: 370 gctaaaacgaagaatgtgtccagcagcacctagaccaggtgtcacaagagaactgaagt 428 ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 110471 gctaaaacgaagaatgtgtccagcagcgcctagaccaggtgttacaagagagctgaagt 110413 Score = 129 bits (65), Expect = 1e-26 Identities = 127/147 (86%), Gaps = 2/147 (1%) Strand = Plus / Minus Query: 78 atggattcctggctaggcaaccggnagnaaggatcatagtgatgaaccgcgaggacatgg 137 |||||| ||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||| Sbjct: 111255 atggatgcctggctaggcaatcggaa--aaggatcatagtcatgaatcgcgaagacatgg 111198 Query: 138 tgtcggccgacgacagaaatgcatgggcgacttacttttctagtcagggtatcaaagttg 197 |||| || ||||||||||||||||| |||||||| ||| |||||||| |||||||| Sbjct: 111197 tgtcaaatgaggacagaaatgcatgggcctcttactttgctaatcagggtaccaaagttg 111138 Query: 198 tttactcaaatggacagctgggcatgg 224 |||||||||| || ||||||||||||| Sbjct: 111137 tttactcaaacgggcagctgggcatgg 111111 Score = 115 bits (58), Expect = 2e-22 Identities = 127/150 (84%) Strand = Plus / Minus Query: 427 gtgggtgcgttttgggaaggatctagagctgttagactcgcctggaatattgccaatgag 486 |||||| |||||||| | ||| ||||||| ||||| || ||||| || ||||||||| | Sbjct: 110281 gtgggttcgttttggaagtgatttagagctattagattcacctggcattttgccaatgcg 110222 Query: 487 aattagtgatcagacagctgctcttaagcttgctatctgtgatgatatcggagaaagatc 546 ||| ||||| ||||||||||| | || |||||||| ||||||||||| |||||||| || Sbjct: 110221 aataagtgaccagacagctgcaatcaaacttgctatatgtgatgatataggagaaaggtc 110162 Query: 547 atatgattttgctgatgtggcagccattct 576 ||||| ||||||||||||||||| ||||| Sbjct: 110161 gtatgactttgctgatgtggcagcgattct 110132 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 223 gggtacgatgaaattaggaagaatggcgaaatcagcagcatctactgtgaacacaaagcg 282 |||||| ||||||||||| || ||||| |||||| |||||||||||||||||||||||| Sbjct: 111013 gggtacaatgaaattaggtaggatggcaaaatcactagcatctactgtgaacacaaagcg 110954 Query: 283 aagagaaaagggattgcttcctcgtccggt 312 ||||| ||||| || ||||||||| |||| Sbjct: 110953 cagagagaaggggttacttcctcgtgcggt 110924
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 180 bits (91), Expect = 3e-42 Identities = 112/119 (94%) Strand = Plus / Minus Query: 310 ggttcgggctggaattgttggatatccaaatgttggtaaatcttccttgattaatcgctt 369 |||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 20983753 ggttcgagctggaatagttggatatccaaatgttggcaaatcttccttaattaatcgctt 20983694 Query: 370 gctaaaacgaagaatgtgtccagcagcacctagaccaggtgtcacaagagaactgaagt 428 ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 20983693 gctaaaacgaagaatgtgtccagcagcgcctagaccaggtgttacaagagagctgaagt 20983635 Score = 129 bits (65), Expect = 1e-26 Identities = 127/147 (86%), Gaps = 2/147 (1%) Strand = Plus / Minus Query: 78 atggattcctggctaggcaaccggnagnaaggatcatagtgatgaaccgcgaggacatgg 137 |||||| ||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||| Sbjct: 20984477 atggatgcctggctaggcaatcggaa--aaggatcatagtcatgaatcgcgaagacatgg 20984420 Query: 138 tgtcggccgacgacagaaatgcatgggcgacttacttttctagtcagggtatcaaagttg 197 |||| || ||||||||||||||||| |||||||| ||| |||||||| |||||||| Sbjct: 20984419 tgtcaaatgaggacagaaatgcatgggcctcttactttgctaatcagggtaccaaagttg 20984360 Query: 198 tttactcaaatggacagctgggcatgg 224 |||||||||| || ||||||||||||| Sbjct: 20984359 tttactcaaacgggcagctgggcatgg 20984333 Score = 115 bits (58), Expect = 2e-22 Identities = 127/150 (84%) Strand = Plus / Minus Query: 427 gtgggtgcgttttgggaaggatctagagctgttagactcgcctggaatattgccaatgag 486 |||||| |||||||| | ||| ||||||| ||||| || ||||| || ||||||||| | Sbjct: 20983503 gtgggttcgttttggaagtgatttagagctattagattcacctggcattttgccaatgcg 20983444 Query: 487 aattagtgatcagacagctgctcttaagcttgctatctgtgatgatatcggagaaagatc 546 ||| ||||| ||||||||||| | || |||||||| ||||||||||| |||||||| || Sbjct: 20983443 aataagtgaccagacagctgcaatcaaacttgctatatgtgatgatataggagaaaggtc 20983384 Query: 547 atatgattttgctgatgtggcagccattct 576 ||||| ||||||||||||||||| ||||| Sbjct: 20983383 gtatgactttgctgatgtggcagcgattct 20983354 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 223 gggtacgatgaaattaggaagaatggcgaaatcagcagcatctactgtgaacacaaagcg 282 |||||| ||||||||||| || ||||| |||||| |||||||||||||||||||||||| Sbjct: 20984235 gggtacaatgaaattaggtaggatggcaaaatcactagcatctactgtgaacacaaagcg 20984176 Query: 283 aagagaaaagggattgcttcctcgtccggt 312 ||||| ||||| || ||||||||| |||| Sbjct: 20984175 cagagagaaggggttacttcctcgtgcggt 20984146
>ref|XM_949009.1| Theileria annulata strain Ankara GTPase (TA02800) partial mRNA Length = 2730 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 319 tggaattgttggatatccaaatgttggtaaa 349 |||| |||||||||||||||||||||||||| Sbjct: 1722 tggatttgttggatatccaaatgttggtaaa 1752
>ref|XM_636262.1| Dictyostelium discoideum hypothetical protein (DDB0206493), partial mRNA Length = 2961 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 327 ttggatatccaaatgttggtaaatcttc 354 |||| ||||||||||||||||||||||| Sbjct: 956 ttggttatccaaatgttggtaaatcttc 983
>gb|AC146766.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1112E06, complete sequence Length = 177488 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 197 gtttactcaaatggacagctgggcatgg 224 |||| ||||||||||||||||||||||| Sbjct: 108971 gttttctcaaatggacagctgggcatgg 108998
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 197 gtttactcaaatggacagctgggcatgg 224 |||| ||||||||||||||||||||||| Sbjct: 23518285 gttttctcaaatggacagctgggcatgg 23518312
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 197 gtttactcaaatggacagctgggcatgg 224 |||| ||||||||||||||||||||||| Sbjct: 23828221 gttttctcaaatggacagctgggcatgg 23828248
>ref|XM_628748.1| Dictyostelium discoideum unclassified GTPase (DDB0230045), partial mRNA Length = 2025 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 332 tatccaaatgttggtaaatcttc 354 ||||||||||||||||||||||| Sbjct: 1012 tatccaaatgttggtaaatcttc 1034
>ref|XM_707441.1| Candida albicans SC5314 hypothetical protein (CaO19.10968), mRNA Length = 315 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 326 gttggatatccaaatgttggtaaatc 351 ||||| |||||||||||||||||||| Sbjct: 35 gttgggtatccaaatgttggtaaatc 10
>ref|XM_707440.1| Candida albicans SC5314 hypothetical protein (CaO19.10967), mRNA Length = 2055 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 326 gttggatatccaaatgttggtaaatc 351 ||||| |||||||||||||||||||| Sbjct: 1081 gttgggtatccaaatgttggtaaatc 1106
>ref|XM_707411.1| Candida albicans SC5314 hypothetical protein (CaO19.3464), mRNA Length = 315 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 326 gttggatatccaaatgttggtaaatc 351 ||||| |||||||||||||||||||| Sbjct: 35 gttgggtatccaaatgttggtaaatc 10
>ref|XM_707410.1| Candida albicans SC5314 hypothetical protein (CaO19.3463), mRNA Length = 2055 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 326 gttggatatccaaatgttggtaaatc 351 ||||| |||||||||||||||||||| Sbjct: 1081 gttgggtatccaaatgttggtaaatc 1106
>emb|CR933428.1| Paramecium tetraurelia, Small GTPase rab, putative, complete gene Length = 3001 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 319 tggaattgttggatatccaaatgttggtaa 348 |||||| ||||||||||| ||||||||||| Sbjct: 418 tggaatggttggatatcctaatgttggtaa 447
>gb|AC140030.6| Medicago truncatula clone mth2-7g24, complete sequence Length = 122057 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 324 ttgttggatatccaaatgttgg 345 |||||||||||||||||||||| Sbjct: 118105 ttgttggatatccaaatgttgg 118126
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 322 aattgttggatatccaaatgttggtaaatc 351 |||||||||| | ||||||||||||||||| Sbjct: 689595 aattgttggaaaaccaaatgttggtaaatc 689566
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 335 ccaaatgttggtaaatcttccttgattaat 364 |||||||||||||||||| | ||||||||| Sbjct: 3815926 ccaaatgttggtaaatctacattgattaat 3815897
>ref|XM_632264.1| Dictyostelium discoideum hypothetical protein (DDB0187301), partial mRNA Length = 1848 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 ttggatatccaaatgttggtaaatc 351 |||| |||||||||||||||||||| Sbjct: 806 ttggttatccaaatgttggtaaatc 830
>ref|XM_608356.2| PREDICTED: Bos taurus similar to Zinc finger protein 451 (Coactivator for steroid receptors) (LOC529894), mRNA Length = 3370 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 atggcgaaatcagcagcatct 265 ||||||||||||||||||||| Sbjct: 2723 atggcgaaatcagcagcatct 2703
>gb|BC060268.1| Mus musculus gene model 444, (NCBI), mRNA (cDNA clone IMAGE:6416369), partial cds Length = 3630 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 gctatctgtgatgatatcgga 538 ||||||||||||||||||||| Sbjct: 3114 gctatctgtgatgatatcgga 3094
>gb|AE002147.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 48 of 59 of the complete genome Length = 27093 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 323 attgttggatatccaaatgttggtaaatc 351 ||||||||| | ||||||||||||||||| Sbjct: 4500 attgttggaaaaccaaatgttggtaaatc 4528
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 tccaaatgttggtaaatcttc 354 ||||||||||||||||||||| Sbjct: 910230 tccaaatgttggtaaatcttc 910210
>ref|XM_990700.1| PREDICTED: Mus musculus gene model 444, (NCBI) (Gm444), mRNA Length = 4434 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 gctatctgtgatgatatcgga 538 ||||||||||||||||||||| Sbjct: 3330 gctatctgtgatgatatcgga 3310
>ref|XM_144253.6| PREDICTED: Mus musculus gene model 444, (NCBI) (Gm444), mRNA Length = 4428 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 gctatctgtgatgatatcgga 538 ||||||||||||||||||||| Sbjct: 3324 gctatctgtgatgatatcgga 3304
>ref|XM_908279.2| PREDICTED: Mus musculus gene model 444, (NCBI) (Gm444), mRNA Length = 4428 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 gctatctgtgatgatatcgga 538 ||||||||||||||||||||| Sbjct: 3324 gctatctgtgatgatatcgga 3304
>ref|XM_447221.1| Candida glabrata CBS138, CAGL0H09724g partial mRNA Length = 1560 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 ttggatatccaaatgttggtaaatc 351 |||| |||||||||||||||||||| Sbjct: 857 ttggttatccaaatgttggtaaatc 881
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 ttggatatccaaatgttggtaaatc 351 |||| |||||||||||||||||||| Sbjct: 950616 ttggttatccaaatgttggtaaatc 950592
>emb|BX957222.1| Methanococcus maripaludis S2 complete genome; segment 4/5 Length = 349607 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 319 tggaattgttggatatccaaatgttggtaaatc 351 |||||| || || |||||||||||||||||||| Sbjct: 271498 tggaatcgtagggtatccaaatgttggtaaatc 271530
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 323 attgttggatatccaaatgttggtaaatc 351 ||||||||| |||||||||||||||||| Sbjct: 1258519 attgttggaattccaaatgttggtaaatc 1258547
>gb|AC158757.6| Mus musculus chromosome 5, clone RP23-64D3, complete sequence Length = 247058 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 gctatctgtgatgatatcgga 538 ||||||||||||||||||||| Sbjct: 142906 gctatctgtgatgatatcgga 142886
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 323 attgttggatatccaaatgttggtaaatc 351 ||||||||| |||||||||||||||||| Sbjct: 1230024 attgttggaattccaaatgttggtaaatc 1230052
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 323 attgttggatatccaaatgttggtaaatc 351 ||||||||| |||||||||||||||||| Sbjct: 1271726 attgttggaattccaaatgttggtaaatc 1271754
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 319 tggaattgttggatatccaaatgttggtaaatc 351 |||||||||||| |||||||| ||||| ||||| Sbjct: 1432718 tggaattgttggttatccaaacgttggaaaatc 1432750
>ref|NM_116513.3| Arabidopsis thaliana GTP binding AT4G02790 mRNA, complete cds Length = 1373 Score = 40.1 bits (20), Expect = 8.0 Identities = 92/116 (79%) Strand = Plus / Plus Query: 317 gctggaattgttggatatccaaatgttggtaaatcttccttgattaatcgcttgctaaaa 376 |||||||| ||||||| || |||||||| ||||| || |||| ||||| | | ||| Sbjct: 663 gctggaataattggataccctaatgttgggaaatcatctctgatcaatcgtctattgaaa 722 Query: 377 cgaagaatgtgtccagcagcacctagaccaggtgtcacaagagaactgaagtgggt 432 |||| ||| || ||||||| || ||||||||||| || |||||| |||| ||||| Sbjct: 723 cgaaaaatttgcgcagcagctccaagaccaggtgtaactagagaaatgaaatgggt 778
>ref|XM_633181.1| Dictyostelium discoideum hypothetical protein (DDB0186477), partial mRNA Length = 2541 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 333 atccaaatgttggtaaatcttccttgattaat 364 ||||||||||||||||||| || || |||||| Sbjct: 1472 atccaaatgttggtaaatcgtcattaattaat 1503
>ref|XM_516282.1| PREDICTED: Pan troglodytes similar to hypothetical protein BC015088 (LOC460174), mRNA Length = 981 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catctactgtgaacacaaag 280 |||||||||||||||||||| Sbjct: 397 catctactgtgaacacaaag 378
>gb|AC004044.1| Arabidopsis thaliana BAC T5J8 from chromosome IV, top arm, complete sequence Length = 98527 Score = 40.1 bits (20), Expect = 8.0 Identities = 89/112 (79%) Strand = Plus / Plus Query: 317 gctggaattgttggatatccaaatgttggtaaatcttccttgattaatcgcttgctaaaa 376 |||||||| ||||||| || |||||||| ||||| || |||| ||||| | | ||| Sbjct: 45679 gctggaataattggataccctaatgttgggaaatcatctctgatcaatcgtctattgaaa 45738 Query: 377 cgaagaatgtgtccagcagcacctagaccaggtgtcacaagagaactgaagt 428 |||| ||| || ||||||| || ||||||||||| || |||||| |||||| Sbjct: 45739 cgaaaaatttgcgcagcagctccaagaccaggtgtaactagagaaatgaagt 45790
>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome Length = 134431 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 117 tgatgaaccgcgaggacatggtgtcggc 144 |||| ||||||||||||||||| ||||| Sbjct: 83507 tgataaaccgcgaggacatggtttcggc 83480
>gb|AC140235.3| Mus musculus BAC clone RP24-272D15 from chromosome 7, complete sequence Length = 185617 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 gctgctcttaagcttgctat 522 |||||||||||||||||||| Sbjct: 65468 gctgctcttaagcttgctat 65487
>gb|AC121995.2| Mus musculus BAC clone RP24-310M4 from 7, complete sequence Length = 126991 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gctgctcttaagcttgctat 522 |||||||||||||||||||| Sbjct: 38295 gctgctcttaagcttgctat 38276
>gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete sequence Length = 112733 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 tcggagaaagatcatatgattttg 557 ||||| |||||||||||||||||| Sbjct: 77954 tcggacaaagatcatatgattttg 77931
>gb|AC137554.15| Medicago truncatula clone mth2-17j18, complete sequence Length = 121248 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 tcggagaaagatcatatgattttg 557 ||||| |||||||||||||||||| Sbjct: 92126 tcggacaaagatcatatgattttg 92149
>emb|AL451124.13| Human DNA sequence from clone RP11-20P5 on chromosome 9 Contains the 3' end of a variant of a novel gene (FLJ31810) and a novel pseudogene (FLJ37424), complete sequence Length = 164291 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 gaacacaaagcgaagagaaaaggg 294 ||||||||||| |||||||||||| Sbjct: 115718 gaacacaaagcaaagagaaaaggg 115741
>gb|AY150415.1| Arabidopsis thaliana unknown protein (At4g02790) mRNA, complete cds Length = 1150 Score = 40.1 bits (20), Expect = 8.0 Identities = 92/116 (79%) Strand = Plus / Plus Query: 317 gctggaattgttggatatccaaatgttggtaaatcttccttgattaatcgcttgctaaaa 376 |||||||| ||||||| || |||||||| ||||| || |||| ||||| | | ||| Sbjct: 646 gctggaataattggataccctaatgttgggaaatcatctctgatcaatcgtctattgaaa 705 Query: 377 cgaagaatgtgtccagcagcacctagaccaggtgtcacaagagaactgaagtgggt 432 |||| ||| || ||||||| || ||||||||||| || |||||| |||| ||||| Sbjct: 706 cgaaaaatttgcgcagcagctccaagaccaggtgtaactagagaaatgaaatgggt 761
>emb|Z49566.1|SCYJR066W S.cerevisiae chromosome X reading frame ORF YJR066w Length = 7860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 attgttggatatccaaatgt 342 |||||||||||||||||||| Sbjct: 6741 attgttggatatccaaatgt 6722
>emb|X74857.1|SCTOR1 S.cerevisiae TOR1 gene Length = 7974 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 attgttggatatccaaatgt 342 |||||||||||||||||||| Sbjct: 6785 attgttggatatccaaatgt 6766
>gb|AY065311.1| Arabidopsis thaliana unknown protein (At4g02790) mRNA, complete cds Length = 1378 Score = 40.1 bits (20), Expect = 8.0 Identities = 92/116 (79%) Strand = Plus / Plus Query: 317 gctggaattgttggatatccaaatgttggtaaatcttccttgattaatcgcttgctaaaa 376 |||||||| ||||||| || |||||||| ||||| || |||| ||||| | | ||| Sbjct: 663 gctggaataattggataccctaatgttgggaaatcatctctgatcaatcgtctattgaaa 722 Query: 377 cgaagaatgtgtccagcagcacctagaccaggtgtcacaagagaactgaagtgggt 432 |||| ||| || ||||||| || ||||||||||| || |||||| |||| ||||| Sbjct: 723 cgaaaaatttgcgcagcagctccaagaccaggtgtaactagagaaatgaaatgggt 778
>emb|AL591981.1| Listeria monocytogenes strain EGD, complete genome, segment 9/12 Length = 347050 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ccaaatgttggtaaatcttc 354 |||||||||||||||||||| Sbjct: 258889 ccaaatgttggtaaatcttc 258870
>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7 Length = 199615 Score = 40.1 bits (20), Expect = 8.0 Identities = 89/112 (79%) Strand = Plus / Plus Query: 317 gctggaattgttggatatccaaatgttggtaaatcttccttgattaatcgcttgctaaaa 376 |||||||| ||||||| || |||||||| ||||| || |||| ||||| | | ||| Sbjct: 94349 gctggaataattggataccctaatgttgggaaatcatctctgatcaatcgtctattgaaa 94408 Query: 377 cgaagaatgtgtccagcagcacctagaccaggtgtcacaagagaactgaagt 428 |||| ||| || ||||||| || ||||||||||| || |||||| |||||| Sbjct: 94409 cgaaaaatttgcgcagcagctccaagaccaggtgtaactagagaaatgaagt 94460
>emb|CR615506.1| full-length cDNA clone CS0DL007YC17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 991 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catctactgtgaacacaaag 280 |||||||||||||||||||| Sbjct: 109 catctactgtgaacacaaag 90
>dbj|AK092776.1| Homo sapiens cDNA FLJ35457 fis, clone SMINT2004589 Length = 2558 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catctactgtgaacacaaag 280 |||||||||||||||||||| Sbjct: 414 catctactgtgaacacaaag 395
>dbj|AK162557.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630006P13 product:hypothetical protein, full insert sequence Length = 1547 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 gctgctcttaagcttgctat 522 |||||||||||||||||||| Sbjct: 1037 gctgctcttaagcttgctat 1056
>gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosome 13, complete sequence Length = 157088 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 aatattgccaatgagaatta 491 |||||||||||||||||||| Sbjct: 75593 aatattgccaatgagaatta 75574
>gb|AC090958.3| Homo sapiens chromosome 3 clone RP11-758G22 map 3p, complete sequence Length = 193333 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catctactgtgaacacaaag 280 |||||||||||||||||||| Sbjct: 142320 catctactgtgaacacaaag 142301
>gb|AY183428.1| Sus scrofa fatty acid synthase (FASN) mRNA, partial cds Length = 807 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ggacatggtgtcggccgacgacag 153 |||||||||| ||||||||||||| Sbjct: 16 ggacatggtgacggccgacgacag 39
>gb|U18778.1|SCE9537 Saccharomyces cerevisiae chromosome V cosmids 9537, 9581, 9495, 9867, and lambda clone 5898 Length = 66030 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tatccaaatgttggtaaatc 351 |||||||||||||||||||| Sbjct: 11674 tatccaaatgttggtaaatc 11693
>gb|AF296508.1|AF296508 Sus scrofa fatty acid synthase (FASN) mRNA, partial cds Length = 147 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ggacatggtgtcggccgacgacag 153 |||||||||| ||||||||||||| Sbjct: 27 ggacatggtgacggccgacgacag 50
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 323 attgttggatatccaaatgttggtaaatcttc 354 ||||||||| | ||||||||||||||||||| Sbjct: 821956 attgttggaaaaacaaatgttggtaaatcttc 821925
>gb|AY954688.1| Sus scrofa fatty acid synthase (FASN) mRNA, partial cds Length = 7235 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ggacatggtgtcggccgacgacag 153 |||||||||| ||||||||||||| Sbjct: 16 ggacatggtgacggccgacgacag 39
>emb|Z17221.1|GHDFR Gerbera hybrid cv. 'Terra Regina' mRNA for dihydroflavonol-4-reductase Length = 1268 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 agagaaaagggattgcttcc 303 |||||||||||||||||||| Sbjct: 991 agagaaaagggattgcttcc 1010
>gb|BC015088.2| Homo sapiens chromosome 3 open reading frame 31, mRNA (cDNA clone MGC:16471 IMAGE:3953782), complete cds Length = 1270 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catctactgtgaacacaaag 280 |||||||||||||||||||| Sbjct: 411 catctactgtgaacacaaag 392
>gb|DQ332954.1| Synthetic construct Saccharomyces cerevisiae clone FLH002527.01X NUG1 gene, complete sequence Length = 1563 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tatccaaatgttggtaaatc 351 |||||||||||||||||||| Sbjct: 862 tatccaaatgttggtaaatc 881
>gb|DQ332566.1| Synthetic construct Saccharomyces cerevisiae clone FLH148891.01X TOR1 gene, complete sequence Length = 7413 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 attgttggatatccaaatgt 342 |||||||||||||||||||| Sbjct: 6484 attgttggatatccaaatgt 6465
>ref|NM_138807.2| Homo sapiens chromosome 3 open reading frame 31 (C3orf31), mRNA Length = 1270 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 catctactgtgaacacaaag 280 |||||||||||||||||||| Sbjct: 411 catctactgtgaacacaaag 392
>emb|AL928672.14| Zebrafish DNA sequence from clone CH211-136O4, complete sequence Length = 187939 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ttgtttactcaaatggacag 214 |||||||||||||||||||| Sbjct: 114021 ttgtttactcaaatggacag 114040
>gb|L19540.1|YSCDRR1A Saccharomyces cerevisiae DRR1 gene, complete cds of dominant mutant drr1-1 Length = 8333 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 attgttggatatccaaatgt 342 |||||||||||||||||||| Sbjct: 6897 attgttggatatccaaatgt 6878
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ccaaatgttggtaaatcttc 354 |||||||||||||||||||| Sbjct: 1992869 ccaaatgttggtaaatcttc 1992850
>gb|L47993.1|YSCORFSAA Saccharomyces cerevisiae ORF genes, complete cds Length = 61989 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 attgttggatatccaaatgt 342 |||||||||||||||||||| Sbjct: 30151 attgttggatatccaaatgt 30132 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,525,748 Number of Sequences: 3902068 Number of extensions: 4525748 Number of successful extensions: 84828 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 84561 Number of HSP's gapped (non-prelim): 262 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)