Clone Information

BLAST Search Result

Clone Name	basd16l01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	222	1e-54
2	gb\|AC134769.1\| Genomic sequence for Oryza sativa, Nipponbare str...	222	1e-54
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	222	1e-54
4	dbj\|AK100355.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	222	1e-54
5	gb\|BT024017.1\| Zea mays clone EL01N0401A06 mRNA sequence	90	1e-14
6	gb\|AY111561.1\| Zea mays CL1285_-2 mRNA sequence	86	2e-13
7	emb\|AL391427.9\| Human DNA sequence from clone RP11-499O7 on chro...	46	0.15
8	gb\|AF516145.1\| Lyngbya majuscula barbamide biosynthesis gene clu...	46	0.15
9	emb\|AL158015.9\| Human DNA sequence from clone RP11-195N11 on chr...	42	2.3
10	gb\|AC134516.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.3
11	gb\|AC116926.1\| Genomic sequence for Oryza sativa (japonica culti...	42	2.3
12	gb\|AC113338.1\| Oryza sativa (japonica cultivar-group) cultivar N...	42	2.3
13	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
14	gb\|AC068466.4\| Homo sapiens chromosome 8, clone RP11-370A22, com...	42	2.3
15	emb\|AL935145.12\| Zebrafish DNA sequence from clone CH211-173B9 i...	42	2.3
16	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.3
17	gb\|AC150408.2\| Branchiostoma floridae clone CH302-56A5, complete...	40	9.0
18	gb\|AC115797.16\| Mus musculus chromosome 17, clone RP23-405J10, c...	40	9.0
19	gb\|AC073486.5\| Homo sapiens BAC clone RP11-807H17 from 7, comple...	40	9.0
20	gb\|AC136903.6\| Mus musculus chromosome 9, clone RP23-475J16, com...	40	9.0
21	gb\|AC161243.2\| Mus musculus BAC clone RP24-241A8 from chromosome...	40	9.0
22	emb\|AL590613.6\| Human DNA sequence from clone RP11-164G6 on chro...	40	9.0
23	gb\|AY129950.1\| Homo sapiens cAMP-specific phosphodiesterase 8B (...	40	9.0
24	emb\|BX323793.10\| Zebrafish DNA sequence from clone DKEY-185P18 i...	40	9.0
25	emb\|AL845307.29\| Zebrafish DNA sequence from clone DKEY-56N17 in...	40	9.0
26	gb\|AC105345.3\| Homo sapiens BAC clone RP11-689P11 from 4, comple...	40	9.0
27	emb\|BX537326.9\| Zebrafish DNA sequence from clone DKEY-4I23 in l...	40	9.0
28	ref\|XM_694478.1\| PREDICTED: Danio rerio similar to LOC446284 pro...	40	9.0
29	tpg\|BK000629.1\| TPA: TPA_exp: Mus musculus otopetrin 2 (Otop2) g...	40	9.0
30	gb\|AC116643.11\| Homo sapiens BAC clone RP11-637J21 from 4, compl...	40	9.0
31	gb\|AC022414.8\| Homo sapiens chromosome 5 clone CTC-316M18, compl...	40	9.0
32	gb\|AC107815.11\| Mus musculus chromosome 7, clone RP23-114A6, com...	40	9.0
33	gb\|AC116555.23\| Mus musculus strain C57BL/6J clone rp23-160b14 m...	40	9.0
34	dbj\|AB087501.1\| Mus musculus js genes for Jackson shaker and hyp...	40	9.0
35	gb\|AC162949.7\| Mus musculus BAC clone RP23-8D10 from chromosome ...	40	9.0
36	emb\|AL603828.9\| Mouse DNA sequence from clone RP23-117K15 on chr...	40	9.0
37	emb\|AL840627.7\| Zebrafish DNA sequence from clone CH211-278B16 i...	40	9.0
38	gb\|AC151298.3\| Mus musculus BAC clone RP23-7F9 from chromosome 1...	40	9.0
39	dbj\|AP003117.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.0
40	dbj\|AP003115.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.0

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  222 bits (112), Expect = 1e-54
 Identities = 154/168 (91%)
 Strand = Plus / Plus

                                                                            
Query: 421      ccacagaatcctgtcttgacaatccagaagccaaagcacgacagattgttgacattggct 480
                ||||||||||||||  |  ||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 10937104 ccacagaatcctgttgttgcaatccagaagccaaagcatgacagattattgaccttggct 10937163

                                                                            
Query: 481      gcatttgggctgactcttgctatcatggccctcgtgataaagaagttcttcaaaatcaac 540
                |||||||| || ||||||||||| |||||||| ||||| |||||||||||||||||||| 
Sbjct: 10937164 gcatttggactcactcttgctattatggcccttgtgatcaagaagttcttcaaaatcaat 10937223

                                                                
Query: 541      ggtctggctggttacattgagggcaagttttaggtaggtttgtgcata 588
                |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 10937224 ggtctggccggttacattgagggcaagttttaggtaggtttgtgcata 10937271



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 80       gcactcgctatcaaatcacgtgaaacaccaccaaaattcggctc 123
                ||||| ||||||||||||||||||||||||||||| || |||||
Sbjct: 10936659 gcactagctatcaaatcacgtgaaacaccaccaaagtttggctc 10936702



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                      
Query: 152      agatccatgagcaaatgctcagtaaagctccacttgttccacaactgctgacaa 205
                ||||||||||||||||||||||||  ||||| | |||||| || ||||||||||
Sbjct: 10936808 agatccatgagcaaatgctcagtagggctccccctgttcctcagctgctgacaa 10936861



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 312      taatactgaccttccaaagcctgattcagagtcagaagttgcagaaaacattgt 365
                ||||| ||||||||||| ||||||||| ||||||||| ||| | || |||||||
Sbjct: 10936971 taataatgaccttccaaggcctgattctgagtcagaaattgtacaacacattgt 10937024

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>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05,
             from chromosome 3, complete sequence
          Length = 127348

 Score =  222 bits (112), Expect = 1e-54
 Identities = 154/168 (91%)
 Strand = Plus / Minus

                                                                         
Query: 421   ccacagaatcctgtcttgacaatccagaagccaaagcacgacagattgttgacattggct 480
             ||||||||||||||  |  ||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 43925 ccacagaatcctgttgttgcaatccagaagccaaagcatgacagattattgaccttggct 43866

                                                                         
Query: 481   gcatttgggctgactcttgctatcatggccctcgtgataaagaagttcttcaaaatcaac 540
             |||||||| || ||||||||||| |||||||| ||||| |||||||||||||||||||| 
Sbjct: 43865 gcatttggactcactcttgctattatggcccttgtgatcaagaagttcttcaaaatcaat 43806

                                                             
Query: 541   ggtctggctggttacattgagggcaagttttaggtaggtttgtgcata 588
             |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 43805 ggtctggccggttacattgagggcaagttttaggtaggtttgtgcata 43758



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 80    gcactcgctatcaaatcacgtgaaacaccaccaaaattcggctc 123
             ||||| ||||||||||||||||||||||||||||| || |||||
Sbjct: 44370 gcactagctatcaaatcacgtgaaacaccaccaaagtttggctc 44327



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 152   agatccatgagcaaatgctcagtaaagctccacttgttccacaactgctgacaa 205
             ||||||||||||||||||||||||  ||||| | |||||| || ||||||||||
Sbjct: 44221 agatccatgagcaaatgctcagtagggctccccctgttcctcagctgctgacaa 44168



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 312   taatactgaccttccaaagcctgattcagagtcagaagttgcagaaaacattgt 365
             ||||| ||||||||||| ||||||||| ||||||||| ||| | || |||||||
Sbjct: 44058 taataatgaccttccaaggcctgattctgagtcagaaattgtacaacacattgt 44005

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  222 bits (112), Expect = 1e-54
 Identities = 154/168 (91%)
 Strand = Plus / Plus

                                                                            
Query: 421      ccacagaatcctgtcttgacaatccagaagccaaagcacgacagattgttgacattggct 480
                ||||||||||||||  |  ||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 10935205 ccacagaatcctgttgttgcaatccagaagccaaagcatgacagattattgaccttggct 10935264

                                                                            
Query: 481      gcatttgggctgactcttgctatcatggccctcgtgataaagaagttcttcaaaatcaac 540
                |||||||| || ||||||||||| |||||||| ||||| |||||||||||||||||||| 
Sbjct: 10935265 gcatttggactcactcttgctattatggcccttgtgatcaagaagttcttcaaaatcaat 10935324

                                                                
Query: 541      ggtctggctggttacattgagggcaagttttaggtaggtttgtgcata 588
                |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 10935325 ggtctggccggttacattgagggcaagttttaggtaggtttgtgcata 10935372



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 80       gcactcgctatcaaatcacgtgaaacaccaccaaaattcggctc 123
                ||||| ||||||||||||||||||||||||||||| || |||||
Sbjct: 10934760 gcactagctatcaaatcacgtgaaacaccaccaaagtttggctc 10934803



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                      
Query: 152      agatccatgagcaaatgctcagtaaagctccacttgttccacaactgctgacaa 205
                ||||||||||||||||||||||||  ||||| | |||||| || ||||||||||
Sbjct: 10934909 agatccatgagcaaatgctcagtagggctccccctgttcctcagctgctgacaa 10934962



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 312      taatactgaccttccaaagcctgattcagagtcagaagttgcagaaaacattgt 365
                ||||| ||||||||||| ||||||||| ||||||||| ||| | || |||||||
Sbjct: 10935072 taataatgaccttccaaggcctgattctgagtcagaaattgtacaacacattgt 10935125

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>dbj|AK100355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083I20, full
            insert sequence
          Length = 1369

 Score =  222 bits (112), Expect = 1e-54
 Identities = 154/168 (91%)
 Strand = Plus / Plus

                                                                        
Query: 421  ccacagaatcctgtcttgacaatccagaagccaaagcacgacagattgttgacattggct 480
            ||||||||||||||  |  ||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 898  ccacagaatcctgttgttgcaatccagaagccaaagcatgacagattattgaccttggct 957

                                                                        
Query: 481  gcatttgggctgactcttgctatcatggccctcgtgataaagaagttcttcaaaatcaac 540
            |||||||| || ||||||||||| |||||||| ||||| |||||||||||||||||||| 
Sbjct: 958  gcatttggactcactcttgctattatggcccttgtgatcaagaagttcttcaaaatcaat 1017

                                                            
Query: 541  ggtctggctggttacattgagggcaagttttaggtaggtttgtgcata 588
            |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 ggtctggccggttacattgagggcaagttttaggtaggtttgtgcata 1065



 Score =  101 bits (51), Expect = 3e-18
 Identities = 109/126 (86%), Gaps = 2/126 (1%)
 Strand = Plus / Plus

                                                                       
Query: 80  gcactcgctatcaaatcacgtgaaacaccaccaaaattcggctccccggnaacgccagna 139
           ||||| ||||||||||||||||||||||||||||| || |||||  | | |||||||  |
Sbjct: 532 gcactagctatcaaatcacgtgaaacaccaccaaagtttggctctgcag-aacgccaaaa 590

                                                                       
Query: 140 gtgtaattgatgagatccatgagcaaatgctcagtaaagctccacttgttccacaactgc 199
             ||||||||||||||||||||||||||||||||||  ||||| | |||||| || ||||
Sbjct: 591 a-gtaattgatgagatccatgagcaaatgctcagtagggctccccctgttcctcagctgc 649

                 
Query: 200 tgacaa 205
           ||||||
Sbjct: 650 tgacaa 655



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 312 taatactgaccttccaaagcctgattcagagtcagaagttgcagaaaacattgt 365
           ||||| ||||||||||| ||||||||| ||||||||| ||| | || |||||||
Sbjct: 765 taataatgaccttccaaggcctgattctgagtcagaaattgtacaacacattgt 818

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>gb|BT024017.1| Zea mays clone EL01N0401A06 mRNA sequence
          Length = 1152

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                       
Query: 442 atccagaagccaaagcacgacagattgttgacattggctgcatttgggctgactcttgct 501
           |||||||||||||| || |||||  ||||||| ||||| |||||||||||||||||||||
Sbjct: 844 atccagaagccaaatcatgacaggctgttgaccttggccgcatttgggctgactcttgct 903

                                        
Query: 502 atcatggccctcgtgataaagaagttctt 530
           || ||||| || ||||| ||||| |||||
Sbjct: 904 attatggcacttgtgatcaagaaattctt 932



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 143 taattgatgagatccatgagcaaatgctcagtaaagctcc 182
           |||||||||||||||||||||||||||||||||| |||||
Sbjct: 518 taattgatgagatccatgagcaaatgctcagtaaggctcc 557

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>gb|AY111561.1| Zea mays CL1285_-2 mRNA sequence
          Length = 550

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 123/150 (82%), Gaps = 1/150 (0%)
 Strand = Plus / Plus

                                                                       
Query: 444 ccagaagccaaagcacgacagattgttgacattggctgcatttgggctgactcttgctat 503
           ||||||||||||||| |||||  | ||||| ||||| ||||||||| |||||||||||||
Sbjct: 24  ccagaagccaaagcatgacaggctattgaccttggccgcatttgggttgactcttgctat 83

                                                                       
Query: 504 catggccctcgtgataaagaagttcttcaaaatcaacggtctggctggttacattgaggg 563
            ||||| || ||||| |||||| ||||     |||| ||  |||  |||| |||||||||
Sbjct: 84  tatggcactagtgatcaagaag-tcttnnnnntcaatggcttgggcggtttcattgaggg 142

                                         
Query: 564 caagttttaggtaggtttgtgcataagttg 593
           |||||| |  ||||| ||||||||||||||
Sbjct: 143 caagttctgagtaggattgtgcataagttg 172

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>emb|AL391427.9| Human DNA sequence from clone RP11-499O7 on chromosome 10 Contains the 5'
              end of the AKR1C2 gene for aldo-keto reductase family 1
              member C2, a novel gene, the AKR1C3 gene for aldo-keto
              reductase family 1 member C3, two aldo-keto reductase
              pseudogenes and the 3' end of the gene for a novel protein
              similar to aldo-keto reductase, complete sequence
          Length = 166974

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 638    atgcttactatatcctatataaa 660
              |||||||||||||||||||||||
Sbjct: 154981 atgcttactatatcctatataaa 154959

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>gb|AF516145.1| Lyngbya majuscula barbamide biosynthesis gene cluster, complete
             sequence
          Length = 40156

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 240   tgacacttttgatgaacatgatg 262
             |||||||||||||||||||||||
Sbjct: 12790 tgacacttttgatgaacatgatg 12812

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>emb|AL158015.9| Human DNA sequence from clone RP11-195N11 on chromosome 20 Contains ESTs,
              STSs and GSSs, complete sequence
          Length = 106123

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 333    tgattcagagtcagaagttgc 353
              |||||||||||||||||||||
Sbjct: 100503 tgattcagagtcagaagttgc 100523

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>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02,
              complete sequence
          Length = 131922

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    gatccatgagcaaatgctcag 173
              |||||||||||||||||||||
Sbjct: 121642 gatccatgagcaaatgctcag 121662

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>gb|AC116926.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1341F06, from chromosome 10, complete
             sequence
          Length = 102520

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   gatccatgagcaaatgctcag 173
             |||||||||||||||||||||
Sbjct: 52801 gatccatgagcaaatgctcag 52781

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>gb|AC113338.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
            OSJNBa0091J06 from chromosome 10, complete sequence
          Length = 141911

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 153  gatccatgagcaaatgctcag 173
            |||||||||||||||||||||
Sbjct: 6725 gatccatgagcaaatgctcag 6745

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 153      gatccatgagcaaatgctcag 173
                |||||||||||||||||||||
Sbjct: 11313654 gatccatgagcaaatgctcag 11313674

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>gb|AC068466.4| Homo sapiens chromosome 8, clone RP11-370A22, complete sequence
          Length = 179597

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 515   tgataaagaagttcttcaaaa 535
             |||||||||||||||||||||
Sbjct: 78503 tgataaagaagttcttcaaaa 78483

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>emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 in linkage group 20,
              complete sequence
          Length = 157156

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 563    gcaagttttaggtaggtttgt 583
              |||||||||||||||||||||
Sbjct: 140819 gcaagttttaggtaggtttgt 140839

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 153      gatccatgagcaaatgctcag 173
                |||||||||||||||||||||
Sbjct: 11320094 gatccatgagcaaatgctcag 11320114

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>gb|AC150408.2| Branchiostoma floridae clone CH302-56A5, complete sequence
          Length = 180427

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   ctccacttgttccacaactgctga 202
             |||||||| |||||||||||||||
Sbjct: 27168 ctccacttcttccacaactgctga 27145

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>gb|AC115797.16| Mus musculus chromosome 17, clone RP23-405J10, complete sequence
          Length = 193909

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 338    cagagtcagaagttgcagaaaaca 361
              |||||||||||| |||||||||||
Sbjct: 181109 cagagtcagaagatgcagaaaaca 181086

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>gb|AC073486.5| Homo sapiens BAC clone RP11-807H17 from 7, complete sequence
          Length = 162911

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 350   ttgcagaaaacattgtgggagctc 373
             |||||||||||||||||| |||||
Sbjct: 27410 ttgcagaaaacattgtggaagctc 27433

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>gb|AC136903.6| Mus musculus chromosome 9, clone RP23-475J16, complete sequence
          Length = 180530

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   cacttctggctccagctctg 301
             ||||||||||||||||||||
Sbjct: 73030 cacttctggctccagctctg 73049

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>gb|AC161243.2| Mus musculus BAC clone RP24-241A8 from chromosome 12, complete sequence
          Length = 185031

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ctggctccagctctggttct 306
             ||||||||||||||||||||
Sbjct: 73811 ctggctccagctctggttct 73792

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>emb|AL590613.6| Human DNA sequence from clone RP11-164G6 on chromosome 6 Contains part
             of the LAMA2 gene for laminin, alpha 2 (merosin,
             congenital muscular dystrophy) (LAMM), complete sequence
          Length = 91827

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 323   ttccaaagcctgattcagagtcag 346
             |||||||||||||| |||||||||
Sbjct: 34026 ttccaaagcctgatgcagagtcag 34003

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>gb|AY129950.1| Homo sapiens cAMP-specific phosphodiesterase 8B (PDE8B) gene,
             alternatively spliced, complete cds
          Length = 216589

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   acacttttgatgaacatgat 261
             ||||||||||||||||||||
Sbjct: 28807 acacttttgatgaacatgat 28826

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>emb|BX323793.10| Zebrafish DNA sequence from clone DKEY-185P18 in linkage group 16,
             complete sequence
          Length = 170199

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   cttccaaagcctgattcaga 341
             ||||||||||||||||||||
Sbjct: 33963 cttccaaagcctgattcaga 33982

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>emb|AL845307.29| Zebrafish DNA sequence from clone DKEY-56N17 in linkage group 13,
             complete sequence
          Length = 135795

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 235   tcacctgacacttttgatgaacat 258
             ||||||||||||||| ||||||||
Sbjct: 35990 tcacctgacacttttaatgaacat 35967

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>gb|AC105345.3| Homo sapiens BAC clone RP11-689P11 from 4, complete sequence
          Length = 196902

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 245    cttttgatgaacatgatgtcaagg 268
              ||||||||||||||||| ||||||
Sbjct: 104437 cttttgatgaacatgatttcaagg 104460

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>emb|BX537326.9| Zebrafish DNA sequence from clone DKEY-4I23 in linkage group 2, complete
              sequence
          Length = 237869

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    ctccacttgttccacaactg 198
              ||||||||||||||||||||
Sbjct: 210543 ctccacttgttccacaactg 210524

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>ref|XM_694478.1| PREDICTED: Danio rerio similar to LOC446284 protein (LOC570942),
           mRNA
          Length = 3671

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 434 tcttgacaatccagaagccaaagc 457
           ||||||||||||||||| ||||||
Sbjct: 201 tcttgacaatccagaagtcaaagc 178

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>tpg|BK000629.1| TPA: TPA_exp: Mus musculus otopetrin 2 (Otop2) gene, complete cds
          Length = 53301

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  tggctccagctctggttctg 307
            ||||||||||||||||||||
Sbjct: 1279 tggctccagctctggttctg 1260

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>gb|AC116643.11| Homo sapiens BAC clone RP11-637J21 from 4, complete sequence
          Length = 214284

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   cttttgatgaacatgatgtcaagg 268
             ||||||||||||||||| ||||||
Sbjct: 41479 cttttgatgaacatgatttcaagg 41502

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>gb|AC022414.8| Homo sapiens chromosome 5 clone CTC-316M18, complete sequence
          Length = 128811

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   acacttttgatgaacatgat 261
             ||||||||||||||||||||
Sbjct: 60285 acacttttgatgaacatgat 60266

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>gb|AC107815.11| Mus musculus chromosome 7, clone RP23-114A6, complete sequence
          Length = 228068

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 258    tgatgtcaaggcagcaggtgtcaa 281
              |||||||||||||||||| |||||
Sbjct: 130671 tgatgtcaaggcagcaggagtcaa 130694

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>gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 map 8, complete sequence
          Length = 209784

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   cagagtcagaagttgcagaa 357
             ||||||||||||||||||||
Sbjct: 33927 cagagtcagaagttgcagaa 33908

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>dbj|AB087501.1| Mus musculus js genes for Jackson shaker and hypothetical protein,
             complete and partial cds
          Length = 72195

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   tggctccagctctggttctg 307
             ||||||||||||||||||||
Sbjct: 30577 tggctccagctctggttctg 30558

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>gb|AC162949.7| Mus musculus BAC clone RP23-8D10 from chromosome 8, complete sequence
          Length = 228830

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    cagagtcagaagttgcagaa 357
              ||||||||||||||||||||
Sbjct: 106204 cagagtcagaagttgcagaa 106185

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>emb|AL603828.9| Mouse DNA sequence from clone RP23-117K15 on chromosome 11, complete
              sequence
          Length = 210982

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    tggctccagctctggttctg 307
              ||||||||||||||||||||
Sbjct: 108501 tggctccagctctggttctg 108482

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>emb|AL840627.7| Zebrafish DNA sequence from clone CH211-278B16 in linkage group 17,
             complete sequence
          Length = 164375

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 641   cttactatatcctatataaa 660
             ||||||||||||||||||||
Sbjct: 56948 cttactatatcctatataaa 56929

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>gb|AC151298.3| Mus musculus BAC clone RP23-7F9 from chromosome 17, complete sequence
          Length = 198349

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 338    cagagtcagaagttgcagaaaaca 361
              |||||||||||| |||||||||||
Sbjct: 150671 cagagtcagaagatgcagaaaaca 150694

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>dbj|AP003117.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1958F4
          Length = 152176

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    ctgattcagagtcagaagtt 351
              ||||||||||||||||||||
Sbjct: 147649 ctgattcagagtcagaagtt 147630

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>dbj|AP003115.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1000E4
          Length = 115937

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   ctgattcagagtcagaagtt 351
             ||||||||||||||||||||
Sbjct: 23156 ctgattcagagtcagaagtt 23137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,095,997
Number of Sequences: 3902068
Number of extensions: 5095997
Number of successful extensions: 99094
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98934
Number of HSP's gapped (non-prelim): 159
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result