| Clone Name | basd16k21 |
|---|---|
| Clone Library Name | barley_pub |
>CXCR2_PANTR (Q28807) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)| (CD182 antigen) (Fragment) Length = 353 Score = 30.8 bits (68), Expect = 0.92 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112 IF CW PYN + L +R I + +R+HI Sbjct: 256 IFLLCWLPYNLVLLADTLMRTQVIQETCERRNHI 289
>CXCR2_GORGO (Q28422) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)| (CD182 antigen) (Fragment) Length = 353 Score = 30.8 bits (68), Expect = 0.92 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112 IF CW PYN + L +R I + +R+HI Sbjct: 256 IFLLCWLPYNLVLLADTLMRTQVIQETCERRNHI 289
>CXCR2_HUMAN (P25025) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)| (GRO/MGSA receptor) (IL-8 receptor type 2) (CD182 antigen) (CDw128b) Length = 360 Score = 30.8 bits (68), Expect = 0.92 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112 IF CW PYN + L +R I + +R+HI Sbjct: 259 IFLLCWLPYNLVLLADTLMRTQVIQETCERRNHI 292
>CXCR1_PANTR (P55920) High affinity interleukin-8 receptor A (IL-8R A) (IL-8| receptor type 1) (CXCR-1) (CD181 antigen) Length = 350 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112 IF CW PYN + L +R I S +R++I Sbjct: 250 IFLLCWLPYNLVLLADTLMRTQVIQESCERRNNI 283
>CXCR2_MACMU (Q28519) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)| (CD182 antigen) (Fragment) Length = 353 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112 IF CW PY+ + L +R I + +R+HI Sbjct: 256 IFLLCWLPYSLVLLADTLMRTQVIQETCERRNHI 289
>CXCR1_GORGO (P55919) High affinity interleukin-8 receptor A (IL-8R A) (IL-8| receptor type 1) (CXCR-1) (CD181 antigen) Length = 350 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112 IF CW PYN + L +R I S +R+++ Sbjct: 250 IFLLCWLPYNLVLLADTLMRTQVIQESCERRNNV 283
>PYR5_DICDI (P09556) Uridine 5'-monophosphate synthase (UMP synthase)| [Includes: Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRtase); Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMPdecase)] Length = 478 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +1 Query: 109 TDVMSLAQGVXYWQPPETALNKVKEVVWEPATSKY 213 TDV+ + +G+ P++ NK + WE SK+ Sbjct: 444 TDVIIVGRGIYQSNDPKSVANKYRTAAWETYQSKF 478
>CXCR1_HUMAN (P25024) High affinity interleukin-8 receptor A (IL-8R A) (IL-8| receptor type 1) (CXCR-1) (CD181 antigen) (CDw128a) Length = 350 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112 IF CW PYN + L +R I + +R++I Sbjct: 250 IFLLCWLPYNLVLLADTLMRTQVIQETCERRNNI 283
>TRBL_RHISN (P55402) Probable conjugal transfer protein trbL| Length = 391 Score = 27.7 bits (60), Expect = 7.8 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = +3 Query: 39 AGQEVRGDGGAGHGEDTRAASRGHGCDVACAGSXLLATS*DSPEQGQGSCMGTSN 203 AGQ R G + G R G G + AGS + SP GS +G +N Sbjct: 316 AGQSARAAGSSLAGAALRGFGAGIGSASSAAGSAAKEKAIGSPGAYAGSILGLAN 370
>CF075_RAT (Q7TNK6) Putative RNA methylase C6orf75 homolog (EC 2.1.1.-)| Length = 463 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Frame = +1 Query: 4 RRSPEAMGSFAKLAK---RCVETEAPVMVKIQ------ELLXGATDVMSLAQGVXYWQPP 156 R S GS ++ K +C E+ PV + +L+ A + + L + YW P Sbjct: 314 RESTRRTGSQKEILKGIEKCPESHVPVSLTYHLSDMFLDLINFAAETLVLGGRLVYWLPV 373 Query: 157 ETALNKVKEVVWEP 198 T K V W P Sbjct: 374 YTPEYTEKMVPWHP 387 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.127 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,661,221 Number of Sequences: 219361 Number of extensions: 595724 Number of successful extensions: 1863 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1857 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)