ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd16k21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CXCR2_PANTR (Q28807) High affinity interleukin-8 receptor B (IL-... 31 0.92
2CXCR2_GORGO (Q28422) High affinity interleukin-8 receptor B (IL-... 31 0.92
3CXCR2_HUMAN (P25025) High affinity interleukin-8 receptor B (IL-... 31 0.92
4CXCR1_PANTR (P55920) High affinity interleukin-8 receptor A (IL-... 29 2.7
5CXCR2_MACMU (Q28519) High affinity interleukin-8 receptor B (IL-... 29 3.5
6CXCR1_GORGO (P55919) High affinity interleukin-8 receptor A (IL-... 29 3.5
7PYR5_DICDI (P09556) Uridine 5'-monophosphate synthase (UMP synth... 28 4.6
8CXCR1_HUMAN (P25024) High affinity interleukin-8 receptor A (IL-... 28 6.0
9TRBL_RHISN (P55402) Probable conjugal transfer protein trbL 28 7.8
10CF075_RAT (Q7TNK6) Putative RNA methylase C6orf75 homolog (EC 2.... 28 7.8

>CXCR2_PANTR (Q28807) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)|
           (CD182 antigen) (Fragment)
          Length = 353

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112
           IF  CW PYN + L    +R   I  +  +R+HI
Sbjct: 256 IFLLCWLPYNLVLLADTLMRTQVIQETCERRNHI 289



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>CXCR2_GORGO (Q28422) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)|
           (CD182 antigen) (Fragment)
          Length = 353

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112
           IF  CW PYN + L    +R   I  +  +R+HI
Sbjct: 256 IFLLCWLPYNLVLLADTLMRTQVIQETCERRNHI 289



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>CXCR2_HUMAN (P25025) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)|
           (GRO/MGSA receptor) (IL-8 receptor type 2) (CD182
           antigen) (CDw128b)
          Length = 360

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112
           IF  CW PYN + L    +R   I  +  +R+HI
Sbjct: 259 IFLLCWLPYNLVLLADTLMRTQVIQETCERRNHI 292



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>CXCR1_PANTR (P55920) High affinity interleukin-8 receptor A (IL-8R A) (IL-8|
           receptor type 1) (CXCR-1) (CD181 antigen)
          Length = 350

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112
           IF  CW PYN + L    +R   I  S  +R++I
Sbjct: 250 IFLLCWLPYNLVLLADTLMRTQVIQESCERRNNI 283



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>CXCR2_MACMU (Q28519) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)|
           (CD182 antigen) (Fragment)
          Length = 353

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112
           IF  CW PY+ + L    +R   I  +  +R+HI
Sbjct: 256 IFLLCWLPYSLVLLADTLMRTQVIQETCERRNHI 289



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>CXCR1_GORGO (P55919) High affinity interleukin-8 receptor A (IL-8R A) (IL-8|
           receptor type 1) (CXCR-1) (CD181 antigen)
          Length = 350

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112
           IF  CW PYN + L    +R   I  S  +R+++
Sbjct: 250 IFLLCWLPYNLVLLADTLMRTQVIQESCERRNNV 283



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>PYR5_DICDI (P09556) Uridine 5'-monophosphate synthase (UMP synthase)|
           [Includes: Orotate phosphoribosyltransferase (EC
           2.4.2.10) (OPRtase); Orotidine 5'-phosphate
           decarboxylase (EC 4.1.1.23) (OMPdecase)]
          Length = 478

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 109 TDVMSLAQGVXYWQPPETALNKVKEVVWEPATSKY 213
           TDV+ + +G+     P++  NK +   WE   SK+
Sbjct: 444 TDVIIVGRGIYQSNDPKSVANKYRTAAWETYQSKF 478



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>CXCR1_HUMAN (P25024) High affinity interleukin-8 receptor A (IL-8R A) (IL-8|
           receptor type 1) (CXCR-1) (CD181 antigen) (CDw128a)
          Length = 350

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 213 IFTGCWFPYNFLDLVQGCLRRLPIXNSLRKRHHI 112
           IF  CW PYN + L    +R   I  +  +R++I
Sbjct: 250 IFLLCWLPYNLVLLADTLMRTQVIQETCERRNNI 283



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>TRBL_RHISN (P55402) Probable conjugal transfer protein trbL|
          Length = 391

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +3

Query: 39  AGQEVRGDGGAGHGEDTRAASRGHGCDVACAGSXLLATS*DSPEQGQGSCMGTSN 203
           AGQ  R  G +  G   R    G G   + AGS     +  SP    GS +G +N
Sbjct: 316 AGQSARAAGSSLAGAALRGFGAGIGSASSAAGSAAKEKAIGSPGAYAGSILGLAN 370



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>CF075_RAT (Q7TNK6) Putative RNA methylase C6orf75 homolog (EC 2.1.1.-)|
          Length = 463

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
 Frame = +1

Query: 4   RRSPEAMGSFAKLAK---RCVETEAPVMVKIQ------ELLXGATDVMSLAQGVXYWQPP 156
           R S    GS  ++ K   +C E+  PV +         +L+  A + + L   + YW P 
Sbjct: 314 RESTRRTGSQKEILKGIEKCPESHVPVSLTYHLSDMFLDLINFAAETLVLGGRLVYWLPV 373

Query: 157 ETALNKVKEVVWEP 198
            T     K V W P
Sbjct: 374 YTPEYTEKMVPWHP 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.127    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,661,221
Number of Sequences: 219361
Number of extensions: 595724
Number of successful extensions: 1863
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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