ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16k21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189523.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1733 Score = 242 bits (122), Expect = 5e-61 Identities = 210/240 (87%) Strand = Plus / Plus Query: 54 cgtggagacggaggcgccggtcatggtgaagatacaagagctgcttcnaggggccacgga 113 |||||||||||| |||||||||||||| ||||| || || |||||| |||| || ||| Sbjct: 209 cgtggagacggaagcgccggtcatggtcaagatgcaggaattgcttcgagggaacaagga 268 Query: 114 tgtgatgtcgcttgcgcagggagttgnttattggcaacctcctgagacagccctgaacaa 173 |||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||| || Sbjct: 269 tgtgatgtcgcttgcgcagggagttgtttattggcagcctcctgaggcagctatgaataa 328 Query: 174 ggtcaaggaagttgtatgggaaccagcaaccagtaaatatggtgctgatgatggccttcc 233 | | || ||| |||||||||||||| ||| |||||||||||| |||||||||| ||||| Sbjct: 329 gattaaagaaattgtatgggaaccatcaatcagtaaatatggctctgatgatggtcttcc 388 Query: 234 cgagcttcgagaagcacttctcgagaagcttcgcagggagaataagctaaccaagtcgtc 293 || || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 389 tgaactccgagaagcacttctcgagaagctgcgcagagagaataagctaaccaagtcgtc 448
>dbj|AK067702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119N03, full insert sequence Length = 1734 Score = 234 bits (118), Expect = 1e-58 Identities = 209/240 (87%) Strand = Plus / Plus Query: 54 cgtggagacggaggcgccggtcatggtgaagatacaagagctgcttcnaggggccacgga 113 |||||||||||| |||||||||||||| ||||| || || |||||| |||| || ||| Sbjct: 210 cgtggagacggaagcgccggtcatggtcaagatgcaggaattgcttcgagggaacaagga 269 Query: 114 tgtgatgtcgcttgcgcagggagttgnttattggcaacctcctgagacagccctgaacaa 173 |||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||| || Sbjct: 270 tgtgatgtcgcttgcgcagggagttgtttattggcagcctcctgaggcagctatgaataa 329 Query: 174 ggtcaaggaagttgtatgggaaccagcaaccagtaaatatggtgctgatgatggccttcc 233 | | || ||| |||||||||||||| ||| |||||||||||| ||| |||||| ||||| Sbjct: 330 gattaaagaaattgtatgggaaccatcaatcagtaaatatggctctgttgatggtcttcc 389 Query: 234 cgagcttcgagaagcacttctcgagaagcttcgcagggagaataagctaaccaagtcgtc 293 || || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 390 tgaactccgagaagcacttctcgagaagctgcgcagagagaataagctaaccaagtcgtc 449
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 123 bits (62), Expect = 3e-25 Identities = 115/133 (86%) Strand = Plus / Minus Query: 129 gcagggagttgnttattggcaacctcctgagacagccctgaacaaggtcaaggaagttgt 188 ||||||||||| ||||||||| ||||||||| |||| |||| ||| | || ||| |||| Sbjct: 4055528 gcagggagttgtttattggcagcctcctgaggcagctatgaataagattaaagaaattgt 4055469 Query: 189 atgggaaccagcaaccagtaaatatggtgctgatgatggccttcccgagcttcgagaagc 248 |||||||||| ||| |||||||||||| |||||||||| ||||| || || |||||||| Sbjct: 4055468 atgggaaccatcaatcagtaaatatggctctgatgatggtcttcctgaactccgagaagc 4055409 Query: 249 acttctcgagaag 261 ||||||||||||| Sbjct: 4055408 acttctcgagaag 4055396 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 260 agcttcgcagggagaataagctaaccaagtcgtc 293 |||| ||||| ||||||||||||||||||||||| Sbjct: 4054171 agctgcgcagagagaataagctaaccaagtcgtc 4054138 Score = 48.1 bits (24), Expect = 0.016 Identities = 35/39 (89%) Strand = Plus / Minus Query: 95 tgcttcnaggggccacggatgtgatgtcgcttgcgcagg 133 |||||| |||| || ||||||||||||||||||||||| Sbjct: 4056064 tgcttcgagggaacaaggatgtgatgtcgcttgcgcagg 4056026 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Minus Query: 54 cgtggagacggaggcgccggtcatggt 80 |||||||||||| |||||||||||||| Sbjct: 4056215 cgtggagacggaagcgccggtcatggt 4056189
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 123 bits (62), Expect = 3e-25 Identities = 115/133 (86%) Strand = Plus / Minus Query: 129 gcagggagttgnttattggcaacctcctgagacagccctgaacaaggtcaaggaagttgt 188 ||||||||||| ||||||||| ||||||||| |||| |||| ||| | || ||| |||| Sbjct: 22271 gcagggagttgtttattggcagcctcctgaggcagctatgaataagattaaagaaattgt 22212 Query: 189 atgggaaccagcaaccagtaaatatggtgctgatgatggccttcccgagcttcgagaagc 248 |||||||||| ||| |||||||||||| |||||||||| ||||| || || |||||||| Sbjct: 22211 atgggaaccatcaatcagtaaatatggctctgatgatggtcttcctgaactccgagaagc 22152 Query: 249 acttctcgagaag 261 ||||||||||||| Sbjct: 22151 acttctcgagaag 22139 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 260 agcttcgcagggagaataagctaaccaagtcgtc 293 |||| ||||| ||||||||||||||||||||||| Sbjct: 20914 agctgcgcagagagaataagctaaccaagtcgtc 20881 Score = 48.1 bits (24), Expect = 0.016 Identities = 35/39 (89%) Strand = Plus / Minus Query: 95 tgcttcnaggggccacggatgtgatgtcgcttgcgcagg 133 |||||| |||| || ||||||||||||||||||||||| Sbjct: 22807 tgcttcgagggaacaaggatgtgatgtcgcttgcgcagg 22769 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Minus Query: 54 cgtggagacggaggcgccggtcatggt 80 |||||||||||| |||||||||||||| Sbjct: 22958 cgtggagacggaagcgccggtcatggt 22932
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 123 bits (62), Expect = 3e-25 Identities = 115/133 (86%) Strand = Plus / Minus Query: 129 gcagggagttgnttattggcaacctcctgagacagccctgaacaaggtcaaggaagttgt 188 ||||||||||| ||||||||| ||||||||| |||| |||| ||| | || ||| |||| Sbjct: 2499 gcagggagttgtttattggcagcctcctgaggcagctatgaataagattaaagaaattgt 2440 Query: 189 atgggaaccagcaaccagtaaatatggtgctgatgatggccttcccgagcttcgagaagc 248 |||||||||| ||| |||||||||||| |||||||||| ||||| || || |||||||| Sbjct: 2439 atgggaaccatcaatcagtaaatatggctctgatgatggtcttcctgaactccgagaagc 2380 Query: 249 acttctcgagaag 261 ||||||||||||| Sbjct: 2379 acttctcgagaag 2367 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 260 agcttcgcagggagaataagctaaccaagtcgtc 293 |||| ||||| ||||||||||||||||||||||| Sbjct: 1142 agctgcgcagagagaataagctaaccaagtcgtc 1109 Score = 48.1 bits (24), Expect = 0.016 Identities = 35/39 (89%) Strand = Plus / Minus Query: 95 tgcttcnaggggccacggatgtgatgtcgcttgcgcagg 133 |||||| |||| || ||||||||||||||||||||||| Sbjct: 3035 tgcttcgagggaacaaggatgtgatgtcgcttgcgcagg 2997 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Minus Query: 54 cgtggagacggaggcgccggtcatggt 80 |||||||||||| |||||||||||||| Sbjct: 3186 cgtggagacggaagcgccggtcatggt 3160
>gb|AF288535.1| Pseudomonas oleovorans FadB (fadB) and beta-ketothiolase FadA (fadA) genes, complete cds Length = 3366 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 gcttcgccaagctggccaaga 49 ||||||||||||||||||||| Sbjct: 830 gcttcgccaagctggccaaga 850
>ref|XM_956745.1| Neurospora crassa OR74A hypothetical protein (NCU07017.1) partial mRNA Length = 1038 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgtggagacggaggcgccgg 73 |||||||||||||||||||| Sbjct: 852 cgtggagacggaggcgccgg 871
>ref|XM_327302.1| Neurospora crassa OR74A hypothetical protein (NCU07017.1) partial mRNA Length = 1038 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgtggagacggaggcgccgg 73 |||||||||||||||||||| Sbjct: 852 cgtggagacggaggcgccgg 871
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cctgaacaaggtcaaggaag 184 |||||||||||||||||||| Sbjct: 641721 cctgaacaaggtcaaggaag 641740
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctgaacaaggtcaaggaag 184 |||||||||||||||||||| Sbjct: 4561807 cctgaacaaggtcaaggaag 4561788
>gb|AE011680.1| Xanthomonas axonopodis pv. citri str. 306, section 58 of 469 of the complete genome Length = 11641 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cctgaacaaggtcaaggaag 184 |||||||||||||||||||| Sbjct: 11309 cctgaacaaggtcaaggaag 11328
>gb|AE012149.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 57 of 460 of the complete genome Length = 11492 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cctgaacaaggtcaaggaag 184 |||||||||||||||||||| Sbjct: 11135 cctgaacaaggtcaaggaag 11154
>gb|AF399011.1| Pseudomonas phage phiKZ, complete genome Length = 280334 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 atatggtgctgatgatggcc 229 |||||||||||||||||||| Sbjct: 193590 atatggtgctgatgatggcc 193609
>gb|AC023194.9| Homo sapiens, clone RP11-216N21, complete sequence Length = 175834 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 ggcaacctcctgagacagccctga 169 ||||||||||||||||||| |||| Sbjct: 100042 ggcaacctcctgagacagctctga 100065
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cctgaacaaggtcaaggaag 184 |||||||||||||||||||| Sbjct: 634026 cctgaacaaggtcaaggaag 634045
>gb|DQ163920.1| Bacteriophage SD1-M, complete genome Length = 281083 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 atatggtgctgatgatggcc 229 |||||||||||||||||||| Sbjct: 194684 atatggtgctgatgatggcc 194703
>emb|AL954708.10| Zebrafish DNA sequence from clone CH211-160I4, complete sequence Length = 163996 Score = 40.1 bits (20), Expect = 3.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 180 ggaagttgtatgggaaccagcaaccagt 207 |||||||| ||||||||||||||||||| Sbjct: 13402 ggaagttg-atgggaaccagcaaccagt 13428
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cctgaacaaggtcaaggaag 184 |||||||||||||||||||| Sbjct: 4566555 cctgaacaaggtcaaggaag 4566536
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 gcttcgccaagctggccaag 48 |||||||||||||||||||| Sbjct: 3044036 gcttcgccaagctggccaag 3044055 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,896,932 Number of Sequences: 3902068 Number of extensions: 1896932 Number of successful extensions: 35433 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 35280 Number of HSP's gapped (non-prelim): 154 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
