>HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 457

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
 Frame = -3

Query: 600 GGTGGESQTLSAARELPAASESPCREDHRPSQGGXXXXXXXXRQMPTPAP----QRQCKL 433
           G   G +    A  E P +S SPC+E  R   G            P PAP    Q+Q   
Sbjct: 288 GEAAGPASETPAGTESPHSSASPCQEHKRGGLGELKGTPAAALSPPEPAPSPGQQQQAAA 347

Query: 432 QLL 424
            LL
Sbjct: 348 HLL 350

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 26.6 bits (57), Expect(2) = 2.7
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -1

Query: 284  PRPTSGDPDTSPPRTTSKHQ*LRPTPRQITPNLVGP 177
            P P +    T PP TTS      P P  ITP    P
Sbjct: 1737 PSPPTTTMTTLPPTTTSSPLTTTPLPPSITPPTFSP 1772



 Score = 22.7 bits (47), Expect(2) = 2.7
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -2

Query: 331  TTALNPNPRT--TPSATILDQPPAT 263
            TT  +P P T  TPS T    PP T
Sbjct: 1718 TTTPSPPPTTMTTPSPTTTPSPPTT 1742

>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
           (Trithorax homolog 2)
          Length = 2715

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 334 HTTALNPNPRTTPSATILDQPPATQTPARHEPRA 233
           + + L P P   P A   + PPA  +PA  EPRA
Sbjct: 662 YESVLTPPPLGAPEAPEPEPPPADDSPAEPEPRA 695

>REV_BIV27 (P24097) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 179

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 334 HTTALNPNPRTTPSATILDQPPATQTPARHEP-----RANTNDCG 215
           H +  +P+P +TPSA++L   P  QTP  H P     +    DCG
Sbjct: 111 HMSLGSPDP-STPSASVLSVNPPAQTPLGHLPPRSYFKLKRVDCG 154

>V70K_TYMV (P10357) 69 kDa protein|
          Length = 628

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -1

Query: 299 PLRYH----PRPTSGDPDTSPPRTTSKHQ*LRPTPRQITP 192
           P ++H    P P S DP    PR  + H    P PR ITP
Sbjct: 222 PNQFHSPRQPPPLSDDPGILGPRPLAPHSTRDPPPRPITP 261

>FOJO_DROME (P54360) Protein four-jointed|
          Length = 583

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 299 PLRYHPRPTSGDPDTSPPRTTSKHQ 225
           P R  P+ TS  P TSP   TS+HQ
Sbjct: 198 PERVQPQETSRSPTTSPTNPTSEHQ 222

>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2365

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 325 ALNPNPR-TTPSATILDQPPATQTPARHEPRANT 227
           AL  NPR ++PS TI  + P T    R +PRA++
Sbjct: 677 ALRDNPRASSPSRTIQQENPRTSCAQRDDPRASS 710

>HNF3B_MOUSE (P35583) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 459

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
 Frame = -3

Query: 600 GGTGGESQTLSAARELPAASESPCREDHRPSQGGXXXXXXXXRQMPTPAP----QRQCKL 433
           G   G +    A  E P +S SPC+E  R                P PAP    Q+Q   
Sbjct: 289 GEAAGSASETPAGTESPHSSASPCQEHKRGGLSELKGAPASALSPPEPAPSPGQQQQAAA 348

Query: 432 QLL 424
            LL
Sbjct: 349 HLL 351

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
 Frame = -1

Query: 353 PPSAIVSHHRTK---S*P*NYPLRYHPRPTSGDPDTSPPR----TTSKHQ---*LRPTPR 204
           PPSA   HH+       P      +H  P  G P + PPR    ++S HQ     RP P 
Sbjct: 149 PPSAKTHHHQDPPGGGPPSTSSHHHHQDPPGGGPPSPPPRPSTSSSSSHQGPPSTRPPPP 208

Query: 203 QITP 192
           Q  P
Sbjct: 209 QRPP 212

>HNF3B_RAT (P32182) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 458

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
 Frame = -3

Query: 600 GGTGGESQTLSAARELPAASESPCREDHRPSQGGXXXXXXXXRQMPTPAP----QRQCKL 433
           G   G +    A  E P +S SPC+E  R                P PAP    Q+Q   
Sbjct: 288 GEAAGSASETPAGTESPHSSASPCQEHKRGGLSELKGTPASALSPPEPAPSPGQQQQAAA 347

Query: 432 QLL 424
            LL
Sbjct: 348 HLL 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,868,345
Number of Sequences: 219361
Number of extensions: 1257899
Number of successful extensions: 4500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4478
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)