| Clone Name | basd16h10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469831.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1374 Score = 159 bits (80), Expect = 1e-35 Identities = 221/268 (82%) Strand = Plus / Plus Query: 265 catcatctgtaacacgttcgagcagatcgagtcggaggagctggatctcgtccccaacgc 324 ||||||||| ||||||||| || | |||||| ||| || ||||| ||||||||||||| Sbjct: 648 catcatctgcaacacgttccaggacatcgagccgggggcgctggccctcgtccccaacgt 707 Query: 325 gctgcccgtcggacccctggaagcgccggctgcgtcgaggtctgccggccaactctggca 384 |||||| || ||||| || ||||||||||| ||||||||| |||||||| |||||| Sbjct: 708 gctgccggttggaccgctcgaagcgccggcgacgtcgaggttagccggccatttctggcc 767 Query: 385 agaagactcggcctgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgt 444 || ||| || ||||||| | |||||||||| |||| | | |||| ||| ||||||| Sbjct: 768 ggaggacacgacctgcctggcatggctcgacgaacaggacgcctgctccgtcgtctacgt 827 Query: 445 ggcgtttgggagcttcaccgtcttcgacgcggcgcggttcctggagctcgccgatgggct 504 |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct: 828 ggcgtttgggagcttcaccgtcttcgacatggcgcgggtccaagagctcgccgatgggct 887 Query: 505 ggagctcaccggccggcccttcctgtgg 532 | ||| | |||||||| ||||||||| Sbjct: 888 agtgctttctggccggccattcctgtgg 915
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 159 bits (80), Expect = 1e-35 Identities = 221/268 (82%) Strand = Plus / Plus Query: 265 catcatctgtaacacgttcgagcagatcgagtcggaggagctggatctcgtccccaacgc 324 ||||||||| ||||||||| || | |||||| ||| || ||||| ||||||||||||| Sbjct: 30996085 catcatctgcaacacgttccaggacatcgagccgggggcgctggccctcgtccccaacgt 30996144 Query: 325 gctgcccgtcggacccctggaagcgccggctgcgtcgaggtctgccggccaactctggca 384 |||||| || ||||| || ||||||||||| ||||||||| |||||||| |||||| Sbjct: 30996145 gctgccggttggaccgctcgaagcgccggcgacgtcgaggttagccggccatttctggcc 30996204 Query: 385 agaagactcggcctgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgt 444 || ||| || ||||||| | |||||||||| |||| | | |||| ||| ||||||| Sbjct: 30996205 ggaggacacgacctgcctggcatggctcgacgaacaggacgcctgctccgtcgtctacgt 30996264 Query: 445 ggcgtttgggagcttcaccgtcttcgacgcggcgcggttcctggagctcgccgatgggct 504 |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct: 30996265 ggcgtttgggagcttcaccgtcttcgacatggcgcgggtccaagagctcgccgatgggct 30996324 Query: 505 ggagctcaccggccggcccttcctgtgg 532 | ||| | |||||||| ||||||||| Sbjct: 30996325 agtgctttctggccggccattcctgtgg 30996352 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Minus Query: 406 ctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgt 465 |||||||||||||||| || |||||| ||| | |||||||| || || ||| | || | Sbjct: 30991392 ctggctcgacgcgcagcccgacggctccgtcgtgtacgtggccttcggcagcatggccat 30991333 Query: 466 cttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggccctt 525 |||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 30991332 cttcgacgcgaggcagttccaggagctcgccgtggggctggagctcaccggccggccgtt 30991273 Query: 526 cctgtggacggtccggacgaacttcacc 553 ||||||| |||||| || |||||||| Sbjct: 30991272 cctgtgggttgtccggccggacttcacc 30991245 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Plus Query: 406 ctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgt 465 |||||||||||||||| || |||||| ||| | |||||||| || || ||| | || | Sbjct: 30980017 ctggctcgacgcgcagcccgacggctccgtcgtgtacgtggccttcggcagcctggccat 30980076 Query: 466 cttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggccctt 525 |||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 30980077 cttcgacgcgaggcagttccaggagctcgccgtggggctggagctcaccggccggccgtt 30980136 Query: 526 cctgtggacggtccggacgaacttcacc 553 ||| ||| |||||| || |||||||| Sbjct: 30980137 cctctgggttgtccggccggacttcacc 30980164 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 398 tgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagc 457 |||||| ||||||||||| | ||||||| |||||| || ||||| ||||| ||||||||| Sbjct: 30999679 tgcctcacctggctcgacacacaggcccccggctccgttatctatgtggcctttgggagc 30999738 Query: 458 ttcaccgtctt 468 | |||| |||| Sbjct: 30999739 tccaccatctt 30999749
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 159 bits (80), Expect = 1e-35 Identities = 221/268 (82%) Strand = Plus / Minus Query: 265 catcatctgtaacacgttcgagcagatcgagtcggaggagctggatctcgtccccaacgc 324 ||||||||| ||||||||| || | |||||| ||| || ||||| ||||||||||||| Sbjct: 99979 catcatctgcaacacgttccaggacatcgagccgggggcgctggccctcgtccccaacgt 99920 Query: 325 gctgcccgtcggacccctggaagcgccggctgcgtcgaggtctgccggccaactctggca 384 |||||| || ||||| || ||||||||||| ||||||||| |||||||| |||||| Sbjct: 99919 gctgccggttggaccgctcgaagcgccggcgacgtcgaggttagccggccatttctggcc 99860 Query: 385 agaagactcggcctgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgt 444 || ||| || ||||||| | |||||||||| |||| | | |||| ||| ||||||| Sbjct: 99859 ggaggacacgacctgcctggcatggctcgacgaacaggacgcctgctccgtcgtctacgt 99800 Query: 445 ggcgtttgggagcttcaccgtcttcgacgcggcgcggttcctggagctcgccgatgggct 504 |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct: 99799 ggcgtttgggagcttcaccgtcttcgacatggcgcgggtccaagagctcgccgatgggct 99740 Query: 505 ggagctcaccggccggcccttcctgtgg 532 | ||| | |||||||| ||||||||| Sbjct: 99739 agtgctttctggccggccattcctgtgg 99712 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 406 ctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgt 465 |||||||||||||||| || |||||| ||| | |||||||| || || ||| | || | Sbjct: 104672 ctggctcgacgcgcagcccgacggctccgtcgtgtacgtggccttcggcagcatggccat 104731 Query: 466 cttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggccctt 525 |||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 104732 cttcgacgcgaggcagttccaggagctcgccgtggggctggagctcaccggccggccgtt 104791 Query: 526 cctgtggacggtccggacgaacttcacc 553 ||||||| |||||| || |||||||| Sbjct: 104792 cctgtgggttgtccggccggacttcacc 104819 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Minus Query: 406 ctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgt 465 |||||||||||||||| || |||||| ||| | |||||||| || || ||| | || | Sbjct: 116047 ctggctcgacgcgcagcccgacggctccgtcgtgtacgtggccttcggcagcctggccat 115988 Query: 466 cttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggccctt 525 |||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 115987 cttcgacgcgaggcagttccaggagctcgccgtggggctggagctcaccggccggccgtt 115928 Query: 526 cctgtggacggtccggacgaacttcacc 553 ||| ||| |||||| || |||||||| Sbjct: 115927 cctctgggttgtccggccggacttcacc 115900 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 398 tgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagc 457 |||||| ||||||||||| | ||||||| |||||| || ||||| ||||| ||||||||| Sbjct: 96385 tgcctcacctggctcgacacacaggcccccggctccgttatctatgtggcctttgggagc 96326 Query: 458 ttcaccgtctt 468 | |||| |||| Sbjct: 96325 tccaccatctt 96315
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 159 bits (80), Expect = 1e-35 Identities = 221/268 (82%) Strand = Plus / Plus Query: 265 catcatctgtaacacgttcgagcagatcgagtcggaggagctggatctcgtccccaacgc 324 ||||||||| ||||||||| || | |||||| ||| || ||||| ||||||||||||| Sbjct: 31086608 catcatctgcaacacgttccaggacatcgagccgggggcgctggccctcgtccccaacgt 31086667 Query: 325 gctgcccgtcggacccctggaagcgccggctgcgtcgaggtctgccggccaactctggca 384 |||||| || ||||| || ||||||||||| ||||||||| |||||||| |||||| Sbjct: 31086668 gctgccggttggaccgctcgaagcgccggcgacgtcgaggttagccggccatttctggcc 31086727 Query: 385 agaagactcggcctgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgt 444 || ||| || ||||||| | |||||||||| |||| | | |||| ||| ||||||| Sbjct: 31086728 ggaggacacgacctgcctggcatggctcgacgaacaggacgcctgctccgtcgtctacgt 31086787 Query: 445 ggcgtttgggagcttcaccgtcttcgacgcggcgcggttcctggagctcgccgatgggct 504 |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct: 31086788 ggcgtttgggagcttcaccgtcttcgacatggcgcgggtccaagagctcgccgatgggct 31086847 Query: 505 ggagctcaccggccggcccttcctgtgg 532 | ||| | |||||||| ||||||||| Sbjct: 31086848 agtgctttctggccggccattcctgtgg 31086875 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Minus Query: 406 ctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgt 465 |||||||||||||||| || |||||| ||| | |||||||| || || ||| | || | Sbjct: 31081915 ctggctcgacgcgcagcccgacggctccgtcgtgtacgtggccttcggcagcatggccat 31081856 Query: 466 cttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggccctt 525 |||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 31081855 cttcgacgcgaggcagttccaggagctcgccgtggggctggagctcaccggccggccgtt 31081796 Query: 526 cctgtggacggtccggacgaacttcacc 553 ||||||| |||||| || |||||||| Sbjct: 31081795 cctgtgggttgtccggccggacttcacc 31081768 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Plus Query: 406 ctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgt 465 |||||||||||||||| || |||||| ||| | |||||||| || || ||| | || | Sbjct: 31070540 ctggctcgacgcgcagcccgacggctccgtcgtgtacgtggccttcggcagcctggccat 31070599 Query: 466 cttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggccctt 525 |||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 31070600 cttcgacgcgaggcagttccaggagctcgccgtggggctggagctcaccggccggccgtt 31070659 Query: 526 cctgtggacggtccggacgaacttcacc 553 ||| ||| |||||| || |||||||| Sbjct: 31070660 cctctgggttgtccggccggacttcacc 31070687 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 398 tgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagc 457 |||||| ||||||||||| | ||||||| |||||| || ||||| ||||| ||||||||| Sbjct: 31090202 tgcctcacctggctcgacacacaggcccccggctccgttatctatgtggcctttgggagc 31090261 Query: 458 ttcaccgtctt 468 | |||| |||| Sbjct: 31090262 tccaccatctt 31090272
>dbj|AK105674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A10, full insert sequence Length = 1852 Score = 159 bits (80), Expect = 1e-35 Identities = 221/268 (82%) Strand = Plus / Minus Query: 265 catcatctgtaacacgttcgagcagatcgagtcggaggagctggatctcgtccccaacgc 324 ||||||||| ||||||||| || | |||||| ||| || ||||| ||||||||||||| Sbjct: 794 catcatctgcaacacgttccaggacatcgagccgggggcgctggccctcgtccccaacgt 735 Query: 325 gctgcccgtcggacccctggaagcgccggctgcgtcgaggtctgccggccaactctggca 384 |||||| || ||||| || ||||||||||| ||||||||| |||||||| |||||| Sbjct: 734 gctgccggttggaccgctcgaagcgccggcgacgtcgaggttagccggccatttctggcc 675 Query: 385 agaagactcggcctgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgt 444 || ||| || ||||||| | |||||||||| |||| | | |||| ||| ||||||| Sbjct: 674 ggaggacacgacctgcctggcatggctcgacgaacaggacgcctgctccgtcgtctacgt 615 Query: 445 ggcgtttgggagcttcaccgtcttcgacgcggcgcggttcctggagctcgccgatgggct 504 |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct: 614 ggcgtttgggagcttcaccgtcttcgacatggcgcgggtccaagagctcgccgatgggct 555 Query: 505 ggagctcaccggccggcccttcctgtgg 532 | ||| | |||||||| ||||||||| Sbjct: 554 agtgctttctggccggccattcctgtgg 527
>dbj|AK069049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003I23, full insert sequence Length = 1680 Score = 159 bits (80), Expect = 1e-35 Identities = 221/268 (82%) Strand = Plus / Plus Query: 265 catcatctgtaacacgttcgagcagatcgagtcggaggagctggatctcgtccccaacgc 324 ||||||||| ||||||||| || | |||||| ||| || ||||| ||||||||||||| Sbjct: 685 catcatctgcaacacgttccaggacatcgagccgggggcgctggccctcgtccccaacgt 744 Query: 325 gctgcccgtcggacccctggaagcgccggctgcgtcgaggtctgccggccaactctggca 384 |||||| || ||||| || ||||||||||| ||||||||| |||||||| |||||| Sbjct: 745 gctgccggttggaccgctcgaagcgccggcgacgtcgaggttagccggccatttctggcc 804 Query: 385 agaagactcggcctgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgt 444 || ||| || ||||||| | |||||||||| |||| | | |||| ||| ||||||| Sbjct: 805 ggaggacacgacctgcctggcatggctcgacgaacaggacgcctgctccgtcgtctacgt 864 Query: 445 ggcgtttgggagcttcaccgtcttcgacgcggcgcggttcctggagctcgccgatgggct 504 |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| Sbjct: 865 ggcgtttgggagcttcaccgtcttcgacatggcgcgggtccaagagctcgccgatgggct 924 Query: 505 ggagctcaccggccggcccttcctgtgg 532 | ||| | |||||||| ||||||||| Sbjct: 925 agtgctttctggccggccattcctgtgg 952
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 117 bits (59), Expect = 4e-23 Identities = 131/155 (84%) Strand = Plus / Plus Query: 396 cctgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttggga 455 ||||||||| |||||||||||||||||| | |||||| ||| ||||||||||||| |||| Sbjct: 127804 cctgcctccgctggctcgacgcgcaggctcccggctccgtcgtctacgtggcgttcggga 127863 Query: 456 gcttcaccgtcttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccg 515 || |||| || ||||||| || ||| ||| |||||| ||||| || |||| |||||||| Sbjct: 127864 gcctcacggtgttcgacgtggaacggctccaggagctggccgacggcctggtgctcaccg 127923 Query: 516 gccggcccttcctgtggacggtccggacgaacttc 550 | ||||| ||||||||| ||||||| | |||||| Sbjct: 127924 ggcggccgttcctgtgggtggtccggcccaacttc 127958 Score = 75.8 bits (38), Expect = 1e-10 Identities = 143/178 (80%) Strand = Plus / Plus Query: 372 gccaactctggcaagaagactcggcctgcctcccctggctcgacgcgcaggcccgcggct 431 |||| ||||||| |||||| |||||||||| |||| |||||||| ||||| | | | | Sbjct: 130283 gccatctctggcccgaagacatggcctgcctcgcctgcctcgacgcccaggcacccagat 130342 Query: 432 ctgtcatctacgtggcgtttgggagcttcaccgtcttcgacgcggcgcggttcctggagc 491 | || |||| ||||| || |||||||| || ||||||||| | || || ||| ||||| Sbjct: 130343 cagttgtctatgtggcattcgggagctttacagtcttcgacactgcaaggctccaggagc 130402 Query: 492 tcgccgatgggctggagctcaccggccggcccttcctgtggacggtccggacgaactt 549 ||||||| ||||||| |||||||| || || ||||||||| ||||||| ||||||| Sbjct: 130403 tcgccgacgggctggcactcaccggacgcccgttcctgtgggtggtccggccgaactt 130460 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 487 ggagctcgccgatgggctggagctcaccggccggcccttcctgtgg 532 |||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 113810 ggagctcgccgaggggctggagctcaccggccggccgttcctgtgg 113855 Score = 69.9 bits (35), Expect = 9e-09 Identities = 119/147 (80%) Strand = Plus / Plus Query: 407 tggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgtc 466 |||||||||||||||||| | |||| ||| | ||||||||||| || |||||||||||| Sbjct: 120147 tggctcgacgcgcaggccgaccgctccgtcgtgtacgtggcgttcggcagcttcaccgtc 120206 Query: 467 ttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggcccttc 526 ||| || || || |||| |||||| || |||||||||||| | |||||||| ||| Sbjct: 120207 ttcaacccgcggcagttcgaggagcttgcgctggggctggagctcgctggccggccgttc 120266 Query: 527 ctgtggacggtccggacgaacttcacc 553 |||||| ||| ||| || |||||||| Sbjct: 120267 ctgtgggtggtgcggccggacttcacc 120293 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 396 cctgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttggga 455 |||||||| ||||||| ||| |||| |||| ||||| ||||| |||||||| ||||||| Sbjct: 133010 cctgcctcacctggcttgacacgcaagccccgggctccgtcatatacgtggcatttggga 133069 Query: 456 gcttcaccgtcttcgacgc 474 ||| || ||||||||||| Sbjct: 133070 gctcgactgtcttcgacgc 133088
>ref|XM_469830.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1632 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 406 ctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgt 465 |||||||||||||||| || |||||| ||| | |||||||| || || ||| | || | Sbjct: 817 ctggctcgacgcgcagcccgacggctccgtcgtgtacgtggccttcggcagcatggccat 876 Query: 466 cttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggccctt 525 |||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 877 cttcgacgcgaggcagttccaggagctcgccgtggggctggagctcaccggccggccgtt 936 Query: 526 cctgtggacggtccggacgaacttcacc 553 ||||||| |||||| || |||||||| Sbjct: 937 cctgtgggttgtccggccggacttcacc 964
>dbj|AK071136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078E19, full insert sequence Length = 1580 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 406 ctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgt 465 |||||||||||||||| || |||||| ||| | |||||||| || || ||| | || | Sbjct: 834 ctggctcgacgcgcagcccgacggctccgtcgtgtacgtggccttcggcagcatggccat 893 Query: 466 cttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggccctt 525 |||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 894 cttcgacgcgaggcagttccaggagctcgccgtggggctggagctcaccggccggccgtt 953 Query: 526 cctgtggacggtccggacgaacttcacc 553 ||||||| |||||| || |||||||| Sbjct: 954 cctgtgggttgtccggccggacttcacc 981
>ref|XM_469828.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Plus Query: 406 ctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagcttcaccgt 465 |||||||||||||||| || |||||| ||| | |||||||| || || ||| | || | Sbjct: 804 ctggctcgacgcgcagcccgacggctccgtcgtgtacgtggccttcggcagcctggccat 863 Query: 466 cttcgacgcggcgcggttcctggagctcgccgatgggctggagctcaccggccggccctt 525 |||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 864 cttcgacgcgaggcagttccaggagctcgccgtggggctggagctcaccggccggccgtt 923 Query: 526 cctgtggacggtccggacgaacttcacc 553 ||| ||| |||||| || |||||||| Sbjct: 924 cctctgggttgtccggccggacttcacc 951
>ref|XM_469832.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1347 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 398 tgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagc 457 |||||| ||||||||||| | ||||||| |||||| || ||||| ||||| ||||||||| Sbjct: 754 tgcctcacctggctcgacacacaggcccccggctccgttatctatgtggcctttgggagc 813 Query: 458 ttcaccgtctt 468 | |||| |||| Sbjct: 814 tccaccatctt 824
>dbj|AK110280.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E03, full insert sequence Length = 1922 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 398 tgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagc 457 |||||| ||||||||||| | ||||||| |||||| || ||||| ||||| ||||||||| Sbjct: 296 tgcctcacctggctcgacacacaggcccccggctccgttatctatgtggcctttgggagc 355 Query: 458 ttcaccgtctt 468 | |||| |||| Sbjct: 356 tccaccatctt 366
>dbj|AK102229.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087P16, full insert sequence Length = 1502 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 398 tgcctcccctggctcgacgcgcaggcccgcggctctgtcatctacgtggcgtttgggagc 457 |||||| ||||||||||| | ||||||| |||||| || ||||| ||||| ||||||||| Sbjct: 797 tgcctcacctggctcgacacacaggcccccggctccgttatctatgtggcctttgggagc 856 Query: 458 ttcaccgtctt 468 | |||| |||| Sbjct: 857 tccaccatctt 867
>ref|NM_195766.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0008A05.23), mRNA Length = 867 Score = 54.0 bits (27), Expect = 5e-04 Identities = 68/79 (86%), Gaps = 2/79 (2%) Strand = Plus / Plus Query: 455 agcttcaccgtcttcgacgcggcg-cggttcctggagctcgccgatgggctggagctcac 513 ||||||||||| |||||| ||||| | |||| |||||||||| ||||| |||||||| Sbjct: 313 agcttcaccgtgttcgac-cggcgccaattccaggagctcgccctggggctcgagctcac 371 Query: 514 cggccggcccttcctgtgg 532 ||||||||| ||||||||| Sbjct: 372 cggccggcctttcctgtgg 390
>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0008A05, complete sequence Length = 124366 Score = 54.0 bits (27), Expect = 5e-04 Identities = 68/79 (86%), Gaps = 2/79 (2%) Strand = Plus / Minus Query: 455 agcttcaccgtcttcgacgcggcg-cggttcctggagctcgccgatgggctggagctcac 513 ||||||||||| |||||| ||||| | |||| |||||||||| ||||| |||||||| Sbjct: 114460 agcttcaccgtgttcgac-cggcgccaattccaggagctcgccctggggctcgagctcac 114402 Query: 514 cggccggcccttcctgtgg 532 ||||||||| ||||||||| Sbjct: 114401 cggccggcctttcctgtgg 114383 Score = 48.1 bits (24), Expect = 0.031 Identities = 45/52 (86%) Strand = Plus / Minus Query: 481 gttcctggagctcgccgatgggctggagctcaccggccggcccttcctgtgg 532 ||||| |||||||||| ||||| ||||||||||||||||| ||| ||||| Sbjct: 121966 gttccaggagctcgccctggggctcgagctcaccggccggcctttcttgtgg 121915
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 5e-04 Identities = 68/79 (86%), Gaps = 2/79 (2%) Strand = Plus / Minus Query: 455 agcttcaccgtcttcgacgcggcg-cggttcctggagctcgccgatgggctggagctcac 513 ||||||||||| |||||| ||||| | |||| |||||||||| ||||| |||||||| Sbjct: 8909853 agcttcaccgtgttcgac-cggcgccaattccaggagctcgccctggggctcgagctcac 8909795 Query: 514 cggccggcccttcctgtgg 532 ||||||||| ||||||||| Sbjct: 8909794 cggccggcctttcctgtgg 8909776 Score = 52.0 bits (26), Expect = 0.002 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand = Plus / Minus Query: 440 tacgtggcgtttgggagcttcaccgtcttcgacgcggcgcg-gttcctggagctcgccga 498 ||||| || ||||| ||||||||||| |||||| |||||| ||||| ||||||||| Sbjct: 8923758 tacgtcgcctttggcagcttcaccgtgttcgac-cggcgccagttccaggagctcgcact 8923700 Query: 499 tgggctggagctcaccggccggcccttcctgtgg 532 || || ||||||||||||||||| ||||||||| Sbjct: 8923699 gggtctcgagctcaccggccggcctttcctgtgg 8923666 Score = 48.1 bits (24), Expect = 0.031 Identities = 45/52 (86%) Strand = Plus / Minus Query: 481 gttcctggagctcgccgatgggctggagctcaccggccggcccttcctgtgg 532 ||||| |||||||||| ||||| ||||||||||||||||| ||| ||||| Sbjct: 8917359 gttccaggagctcgccctggggctcgagctcaccggccggcctttcttgtgg 8917308
>dbj|AK060146.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B01, full insert sequence Length = 1105 Score = 54.0 bits (27), Expect = 5e-04 Identities = 68/79 (86%), Gaps = 2/79 (2%) Strand = Plus / Minus Query: 455 agcttcaccgtcttcgacgcggcg-cggttcctggagctcgccgatgggctggagctcac 513 ||||||||||| |||||| ||||| | |||| |||||||||| ||||| |||||||| Sbjct: 564 agcttcaccgtgttcgac-cggcgccaattccaggagctcgccctggggctcgagctcac 506 Query: 514 cggccggcccttcctgtgg 532 ||||||||| ||||||||| Sbjct: 505 cggccggcctttcctgtgg 487
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 5e-04 Identities = 68/79 (86%), Gaps = 2/79 (2%) Strand = Plus / Minus Query: 455 agcttcaccgtcttcgacgcggcg-cggttcctggagctcgccgatgggctggagctcac 513 ||||||||||| |||||| ||||| | |||| |||||||||| ||||| |||||||| Sbjct: 8914992 agcttcaccgtgttcgac-cggcgccaattccaggagctcgccctggggctcgagctcac 8914934 Query: 514 cggccggcccttcctgtgg 532 ||||||||| ||||||||| Sbjct: 8914933 cggccggcctttcctgtgg 8914915 Score = 52.0 bits (26), Expect = 0.002 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand = Plus / Minus Query: 440 tacgtggcgtttgggagcttcaccgtcttcgacgcggcgcg-gttcctggagctcgccga 498 ||||| || ||||| ||||||||||| |||||| |||||| ||||| ||||||||| Sbjct: 8928897 tacgtcgcctttggcagcttcaccgtgttcgac-cggcgccagttccaggagctcgcact 8928839 Query: 499 tgggctggagctcaccggccggcccttcctgtgg 532 || || ||||||||||||||||| ||||||||| Sbjct: 8928838 gggtctcgagctcaccggccggcctttcctgtgg 8928805 Score = 48.1 bits (24), Expect = 0.031 Identities = 45/52 (86%) Strand = Plus / Minus Query: 481 gttcctggagctcgccgatgggctggagctcaccggccggcccttcctgtgg 532 ||||| |||||||||| ||||| ||||||||||||||||| ||| ||||| Sbjct: 8922498 gttccaggagctcgccctggggctcgagctcaccggccggcctttcttgtgg 8922447
>ref|NM_195769.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase (OSJNBa0027A14.3), mRNA Length = 834 Score = 52.0 bits (26), Expect = 0.002 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand = Plus / Plus Query: 440 tacgtggcgtttgggagcttcaccgtcttcgacgcggcgcg-gttcctggagctcgccga 498 ||||| || ||||| ||||||||||| |||||| |||||| ||||| ||||||||| Sbjct: 298 tacgtcgcctttggcagcttcaccgtgttcgac-cggcgccagttccaggagctcgcact 356 Query: 499 tgggctggagctcaccggccggcccttcctgtgg 532 || || ||||||||||||||||| ||||||||| Sbjct: 357 gggtctcgagctcaccggccggcctttcctgtgg 390
>gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0027A14, from chromosome 10, complete sequence Length = 175667 Score = 52.0 bits (26), Expect = 0.002 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand = Plus / Minus Query: 440 tacgtggcgtttgggagcttcaccgtcttcgacgcggcgcg-gttcctggagctcgccga 498 ||||| || ||||| ||||||||||| |||||| |||||| ||||| ||||||||| Sbjct: 11981 tacgtcgcctttggcagcttcaccgtgttcgac-cggcgccagttccaggagctcgcact 11923 Query: 499 tgggctggagctcaccggccggcccttcctgtgg 532 || || ||||||||||||||||| ||||||||| Sbjct: 11922 gggtctcgagctcaccggccggcctttcctgtgg 11889 Score = 48.1 bits (24), Expect = 0.031 Identities = 45/52 (86%) Strand = Plus / Minus Query: 481 gttcctggagctcgccgatgggctggagctcaccggccggcccttcctgtgg 532 ||||| |||||||||| ||||| ||||||||||||||||| ||| ||||| Sbjct: 5582 gttccaggagctcgccctggggctcgagctcaccggccggcctttcttgtgg 5531
>ref|NM_195768.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase (OSJNBa0027A14.2), mRNA Length = 1479 Score = 48.1 bits (24), Expect = 0.031 Identities = 45/52 (86%) Strand = Plus / Plus Query: 481 gttcctggagctcgccgatgggctggagctcaccggccggcccttcctgtgg 532 ||||| |||||||||| ||||| ||||||||||||||||| ||| ||||| Sbjct: 951 gttccaggagctcgccctggggctcgagctcaccggccggcctttcttgtgg 1002
>ref|XM_466915.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1560 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 488 gagctcgccgatgggctggagctcaccggccggcccttcctgtgg 532 |||||||||| || |||||| |||||||||||| ||||||||| Sbjct: 1063 gagctcgccgtcggcctggaggccaccggccggccgttcctgtgg 1107
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 505 ggagctcaccggccggcccttcctg 529 |||||||||||||||||||| |||| Sbjct: 1183678 ggagctcaccggccggccctgcctg 1183702
>emb|CR665668.2|CNS0FCLM Tetraodon nigroviridis full-length cDNA Length = 734 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 ggctcgacgcgcaggcccgcggctc 432 |||||||||||||| |||||||||| Sbjct: 3 ggctcgacgcgcagccccgcggctc 27
>emb|CR658306.2|CNS0F6X4 Tetraodon nigroviridis full-length cDNA Length = 740 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 ggctcgacgcgcaggcccgcggctc 432 |||||||||||||| |||||||||| Sbjct: 12 ggctcgacgcgcagccccgcggctc 36
>emb|CR657416.2|CNS0F68E Tetraodon nigroviridis full-length cDNA Length = 740 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 ggctcgacgcgcaggcccgcggctc 432 |||||||||||||| |||||||||| Sbjct: 12 ggctcgacgcgcagccccgcggctc 36
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 gcgcaggcccgcggctctgtc 436 ||||||||||||||||||||| Sbjct: 82296 gcgcaggcccgcggctctgtc 82276
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 488 gagctcgccgatgggctggagctcaccggccggcccttcctgtgg 532 |||||||||| || |||||| |||||||||||| ||||||||| Sbjct: 25442683 gagctcgccgtcggcctggaggccaccggccggccgttcctgtgg 25442639
>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1643_A10 Length = 130037 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 488 gagctcgccgatgggctggagctcaccggccggcccttcctgtgg 532 |||||||||| || |||||| |||||||||||| ||||||||| Sbjct: 98345 gagctcgccgtcggcctggaggccaccggccggccgttcctgtgg 98301
>ref|XM_471504.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1296 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 ctggagctcaccggccggcc 522 |||||||||||||||||||| Sbjct: 922 ctggagctcaccggccggcc 941
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 tcaccgtcttcgacgcggcg 478 |||||||||||||||||||| Sbjct: 2374455 tcaccgtcttcgacgcggcg 2374436
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 gacgcggcgcggttcctgga 489 |||||||||||||||||||| Sbjct: 3451610 gacgcggcgcggttcctgga 3451591
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 ctggagctcaccggccggcc 522 |||||||||||||||||||| Sbjct: 11461834 ctggagctcaccggccggcc 11461815
>gb|DQ018795.1| Uncultured anaerobic bacterium clone C-52 16S ribosomal RNA gene, partial sequence Length = 994 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 ggtctgccggccaactctgg 382 |||||||||||||||||||| Sbjct: 899 ggtctgccggccaactctgg 918
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcctgcctcccctggctcga 414 |||||||||||||||||||| Sbjct: 1368034 gcctgcctcccctggctcga 1368015
>emb|BX927187.7| Zebrafish DNA sequence from clone DKEY-44L17 in linkage group 19, complete sequence Length = 127280 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ctcgccgatgggctggagct 510 |||||||||||||||||||| Sbjct: 115694 ctcgccgatgggctggagct 115713
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 ctgcctgagcagcttgccggacag 204 |||| ||||||||||||||||||| Sbjct: 4261515 ctgcttgagcagcttgccggacag 4261538
>emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0056F09, complete sequence Length = 148191 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 ctggagctcaccggccggcc 522 |||||||||||||||||||| Sbjct: 87447 ctggagctcaccggccggcc 87428 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,949,739 Number of Sequences: 3902068 Number of extensions: 2949739 Number of successful extensions: 57841 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56967 Number of HSP's gapped (non-prelim): 864 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)