>GFRA4_HUMAN (Q9GZZ7) GDNF family receptor alpha-4 precursor (GFR-alpha-4)|
           (Persephin receptor)
          Length = 299

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
 Frame = -3

Query: 478 AAGPWSDW-------HRPPSCGTPPSTPFLS-LTRPCSSHP-RFPLPPSR 356
           AAGPW  W       HRPP+    P  P LS L  P +  P R P  P R
Sbjct: 136 AAGPWRGWGRGLSPAHRPPAAQASP--PGLSGLVHPSAQRPRRLPAGPGR 183

>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle|
          Length = 1938

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
 Frame = +1

Query: 334  LLRELQQIWTEVGESEGEKSKVLSEIER------ECLEVYRRKVDDANRTRVQLHQSVAT 495
            L  +L+Q   E+ ++   + KV  ++E+      + L+  +  V+D  R + +L ++V  
Sbjct: 1020 LKAKLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQENVEDLERVKRELEENVRR 1079

Query: 496  KEAEVALLMATLGEHK 543
            KEAE++ L + L + +
Sbjct: 1080 KEAEISSLNSKLEDEQ 1095

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
 Frame = -3

Query: 523 PLTRQPRLPW-------WPQTGAAGPWSDWHRPPSCGTPPSTPFLSLTRPCSSHPRFPLP 365
           P  RQPR P         P T +  P    H PP     P TP  +  +P  S P F  P
Sbjct: 515 PPHRQPRPPTPTYGQPPSPPTFSPPPPRQIHSPPPPHWQPRTPTPTYGQP-PSPPTFSAP 573

Query: 364 PSRFAEAL*AKRRSRYPPCPPW 299
           P R   +     R   PP P +
Sbjct: 574 PPRQIHSPPPPHRQPRPPTPTY 595

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 14/63 (22%)
 Frame = -3

Query: 448  PPSC---GTPPSTPFLSLTRPCSS----------HPRFPLPPSRF-AEAL*AKRRSRYPP 311
            PPSC    TPP+ P  S   PCS+           P  PLP  +   EAL        PP
Sbjct: 1041 PPSCPPTSTPPAGPSSSSQPPCSAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPP 1100

Query: 310  CPP 302
             PP
Sbjct: 1101 PPP 1103

>PDLI4_HUMAN (P50479) PDZ and LIM domain protein 4 (LIM protein RIL)|
           (Reversion-induced LIM protein)
          Length = 330

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -3

Query: 451 RPPSCGTPPSTPFLSLTRPCSSHPRFPLPPSRFAEAL*AKRRSRYPPCPP 302
           RP   GT P     SL  P    PRFP+P +  +EA    + S     PP
Sbjct: 118 RPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPP 167

>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -3

Query: 544 ACAPLE*P-LTRQPRLPWWPQTGAAGPWSDWH--RPPSCGTPPSTPFLSLTRPCSSHPRF 374
           A APL+ P  +  P LP     G +      H  RPPS   PPS P  S++RP S  P  
Sbjct: 713 AAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRPPS--RPPSRP-QSVSRPPSEPPLH 769

Query: 373 PLPP 362
           P PP
Sbjct: 770 PCPP 773

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 14/63 (22%)
 Frame = -3

Query: 448  PPSC---GTPPSTPFLSLTRPCSS----------HPRFPLPPSRF-AEAL*AKRRSRYPP 311
            PPSC    TPP+ P  S   PCS+           P  PLP  +   EAL        PP
Sbjct: 1041 PPSCPPTSTPPAGPSSSSQPPCSAAVSSGGNVPGAPSCPLPAVQIKEEALDEAEEPESPP 1100

Query: 310  CPP 302
             PP
Sbjct: 1101 PPP 1103

>DYR1B_MOUSE (Q9Z188) Dual specificity tyrosine-phosphorylation-regulated kinase|
           1B (EC 2.7.12.1)
          Length = 589

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = -3

Query: 451 RPPSCGTPPSTPFLSLTR-----PCSSHPRFPLPPSRFAEAL*AKRRSRYPPCPP 302
           RPPS  +PP    + ++       CS  P  P P    A AL  +     PP PP
Sbjct: 511 RPPSPTSPPPPELMDVSLVGSPPDCSPPPPAPAPQHPAASALRTRMTGGRPPLPP 565

>MURC_CAMJR (Q5HU47) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 431

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +1

Query: 304 VGMEGTGCGALLRELQQIWTEVGESEGEKSKVLSEIERECLEV 432
           +G+ G G  AL R L++   ++  S+ ++SK+  E+E+E ++V
Sbjct: 7   IGIGGIGISALARFLKEKGFKISGSDLKESKITKELEKEGVKV 49

>MURC_CAMJE (Q9PNN7) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 432

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +1

Query: 304 VGMEGTGCGALLRELQQIWTEVGESEGEKSKVLSEIERECLEV 432
           +G+ G G  AL R L++   ++  S+ ++SK+  E+E+E ++V
Sbjct: 8   IGIGGIGISALARFLREKGFKISGSDLKESKITKELEKEGVKV 50

>UVRC_MYCPA (Q741E5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 647

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +1

Query: 304 VGMEGTGCGALLRELQQIWTEVGESEGEKSKVLSEIERECLEVYRRKVDDANRTRVQLHQ 483
           +G+       L + L+++W        E   V+     E L + +R  D+A+R  +  H+
Sbjct: 522 LGITDVAVIGLAKRLEEVWVP-----SEPDPVIMPRNSEGLYLLQRVRDEAHRFAITYHR 576

Query: 484 SVATKEAEVALL--MATLGEHK 543
           S  +K    ++L  +  LGEH+
Sbjct: 577 SKRSKRMTASVLDSVPGLGEHR 598

>JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylation protein 1A|
           (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and
           leucine-rich repeat protein 11)
          Length = 1146

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = -3

Query: 451 RPPSCGTPPSTPFLSLTRPCSSHPRFPLPPSRFAEAL*AKRRSR 320
           RPP   +PPS P L L    SS P  P PPS   +   A R  R
Sbjct: 735 RPPLGQSPPSPPLLLLPPSPSSAP--PTPPSAQTQVPLASREER 776

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 523 PLTRQPRLPWWPQTGAAGPWSDWHRPPSCGTPPSTPFLSLTRPCSSHPRFPLPP 362
           P+ + P +P  P             PP   +PPSTP    T P +  P  P+PP
Sbjct: 103 PIVKPPHVPRPPIV----------HPPPIVSPPSTPKPPKTPPFTPKPPSPIPP 146

>CPXM2_HUMAN (Q8N436) Carboxypeptidase-like protein X2 precursor|
          Length = 756

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 4/111 (3%)
 Frame = -3

Query: 511 QPRLPWWPQTGAAGPWSDWHRPPSCGTPPSTPFLSLTRPCSSHPRFPLPPSRFAEAL*AK 332
           +P L  +     AGP  +W R                      P+ P PP R  +   A 
Sbjct: 51  EPELETFSPPLPAGPGEEWER---------------------RPQEPRPPKRATKPKKAP 89

Query: 331 RRSRYPPCPPWNGSNXXXXXXXXXXXXXXXXRDK----ATQSLKDTYPPLG 191
           +R +  P PP  G +                 D     A + ++++ PPLG
Sbjct: 90  KREKSAPEPPPPGKHSNKKVMRTKSSEKAANDDHSVRVAREDVRESCPPLG 140

>BWR1B_HUMAN (Q8N1D0) Beckwith-Wiedemann syndrome chromosome region 1 candidate|
           protein B (p27-Beckwith-Wiedemann region 1 B)
           (p27-BWR1B) (Organic cation transporter-like protein
           2-antisense) (Solute carrier family 22 member 18
           antisense) (Solute carrier
          Length = 253

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +2

Query: 422 AWRCTAGRWTM-PIGPGSSCTSLWPPR-KPRLP 514
           A RC  G W   P GP  S  S+WP     RLP
Sbjct: 103 AMRCAEGAWWFSPDGPAGSAASIWPAEGAERLP 135

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -3

Query: 550  DTACAPLE*PLTRQPRLPWWPQTGAAGPWSDWHRPPSCGTPPSTPFLSLTRPCSSHPRFP 371
            DT  + ++ PLT QP        G   P   +H+      PPSTP  + +      P+ P
Sbjct: 1800 DTPSSGIQSPLTPQPG------NGNMSPAQSFHKELFTKQPPSTPTSTSSDDVFVKPQAP 1853

Query: 370  LPP 362
             PP
Sbjct: 1854 PPP 1856


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,862,550
Number of Sequences: 219361
Number of extensions: 1406005
Number of successful extensions: 5588
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5542
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)