>YGY1_YEAST (P53073) Hypothetical 21.5 kDa protein in SEC15-SAP4 intergenic|
           region
          Length = 190

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 12/143 (8%)
 Frame = +1

Query: 118 PDPPGF---------TRSAPEADDAASARQRKETEAAWKGQKAWEVAQAPFKNLXXXXXX 270
           P PPGF         TR   +A    ++  +K      + QKAW++A  P K++      
Sbjct: 31  PSPPGFEGNSSKGNVTRKQQDATSQTTSLAQKNQITVLQVQKAWQIALQPAKSIPMNIFM 90

Query: 271 XXXAGSTVHLFSIGIVFSALWQPFNALRSVGKVFEPF---KDPRVDTLAPKLLFTALNLA 441
              +G+++ +  I      L  P  A+ S    F+P    K  +        ++      
Sbjct: 91  SYMSGTSLQIIPIMTALMLLSGPIKAIFSTRSAFKPVLGNKATQSQVQTAMFMYIVFQGV 150

Query: 442 AMGLGVWKLNTLGLLPTNASDWV 510
            M +G  KLN++GL+P    DW+
Sbjct: 151 LMYIGYRKLNSMGLIPNAKGDWL 173

>NRCAM_CHICK (P35331) Neuronal cell adhesion molecule precursor (Nr-CAM)|
           (NgCAM-related cell adhesion molecule) (Ng-CAM-related)
           (hBravo)
          Length = 1284

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 563 KGIPPPAYSTSRAGDSEDTQSDAFVGRRPN 474
           KG PPP++S +R G   D   DA V  +PN
Sbjct: 66  KGKPPPSFSWTRNGTHFDIDKDAQVTMKPN 95

>NU1M_CROLA (P34186) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 324

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 415 LLFTALNLAAMGLGVWKLNTLG---LLPTNASDWVSSLSPAREVEYAGGGIPLM 567
           LL  A  LAAM    W ++TL      P + ++  S L+P   VEYAGG   L+
Sbjct: 180 LLLPACPLAAM----WYISTLAETNRAPFDLTEGESELAPGFNVEYAGGPFALL 229

>APOE_ZALCA (Q7M2U7) Apolipoprotein E precursor (Apo-E)|
          Length = 329

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 118 PDPPGFTRSAPEADDAASARQRKETEAAWKGQKAWEVAQAPF 243
           P+ P      PE +      Q  E EA W+  + WE+A A F
Sbjct: 22  PESPLEENLEPELEPKRELEQEVEPEAGWQAGQPWELALARF 63

>AOX1_AERPE (Q9YDX6) Heme-copper oxidase subunit I+III (EC 1.9.3.-)|
          Length = 815

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 390 WVLKWFENFPDRSECVEGLPESREDDT 310
           W L+WF N P      +G+P  R+D+T
Sbjct: 496 WTLEWFTNSPPPKHNFDGVPVVRKDNT 522

>GPT1_YEAST (P32784) Glycerol-3-phosphate O-acyltransferase 1 (EC 2.3.1.15)|
           (G-3-P acyltransferase 1) (Dihydroxyacetone phosphate
           acyltransferase 1) (EC 2.3.1.42) (DHAP-AT 1)
           (Glycerol-3-phosphate / dihydroxyacetone phosphate
           acyltransferase 1)
          Length = 759

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 512 DTQSDAFVGRRPNVLSFQTPKPIAAKLRAVKSNLGASVSTLGSLNGSKTFPT-DRSALK 339
           D   D F   RP VLS  +PK +  KL+  + NL   +  + +  GS+ FP  D +AL+
Sbjct: 546 DIGMDGFKSLRPLVLSLTSPKGL-QKLQKDRRNLAERIIEVVNNFGSELFPDFDSAALR 603

>GLIS1_MOUSE (Q8K1M4) Zinc finger protein GLIS1 (GLI-similar 1) (Gli homologous|
           protein 1) (GliH1)
          Length = 789

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 566 IKGIPPPAYSTSRAGDSEDTQSDAFVGRRPNVLSFQTPKPI 444
           +KG+ PP    +    S   QS + V  +P   SFQ+P P+
Sbjct: 637 LKGLGPPPLPPASQSQSPGGQSFSTVPSKPTYPSFQSPPPL 677

>SP100_MUSCR (O35893) Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear|
           dot-associated Sp100 protein)
          Length = 482

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 24/85 (28%), Positives = 34/85 (40%)
 Frame = -2

Query: 551 PPAYSTSRAGDSEDTQSDAFVGRRPNVLSFQTPKPIAAKLRAVKSNLGASVSTLGSLNGS 372
           PP   T R GD+ DT+S   + RR      +  +  +  +R +K  +  S          
Sbjct: 302 PPTLRTDRRGDTSDTESSIIIRRRKRTGRKKRERLGSYLIRNIKIPMKTS---------W 352

Query: 371 KTFPTDRSALKGCQRAEKTIPMLNR 297
           KT    RSA    QR  K  P + R
Sbjct: 353 KTAVLARSANTSSQRRRKRGPRIPR 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,825,490
Number of Sequences: 219361
Number of extensions: 1460118
Number of successful extensions: 4229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4227
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)