| Clone Name | basd16g14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ019635.1| Triticum aestivum U2AF large subunit (U2AF65) mRNA, complete cds Length = 1786 Score = 965 bits (487), Expect = 0.0 Identities = 567/587 (96%), Gaps = 5/587 (0%) Strand = Plus / Plus Query: 1 tcggggtcgggacagggnatctagnacaaggnatcgggnatagggacaaggnatcgggat 60 ||||||||||||||||| |||||| |||||| |||||| | |||||||||| |||||||| Sbjct: 189 tcggggtcgggacaggg-atctag-acaagg-atcggg-acagggacaagg-atcgggat 243 Query: 61 cgtcaccaaaggcatcaccgtgagaaaagggagcaccgagaccgtcctgatgatcacgat 120 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 244 cgtcaccaaaggcatcaccgtgacaaaagggagcaccgagaccgtcctgatgatcacgat 303 Query: 121 cgtcacagaagccgtgattctgaaaggagaagggaccgtgagagagatggacatcacagg 180 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 304 cgtcacagaagccgtgattctgaaaggagaagggaccgcgagagagatggacatcgcagg 363 Query: 181 catcgctctcgttcacggtctcgttcaaggggcagggatgatcacagatctcgatctcag 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364 catcgctctcgttcacggtctcgttcaaggggcagggatgatcacagatctcgatctcat 423 Query: 241 tcaaaaagcaagcgagtcagtgggtttgacctgggaccaacagcacaatctgtagttcct 300 ||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||| Sbjct: 424 tcaaaaagcaagcgagtcagtggattcgacctgggaccaacagcacaatccgtacttcct 483 Query: 301 cagttccctactattccaaccccaagtcagttaccgggctcttctattcctggaatgttc 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 484 cagttccctaccattccaaccccaagtcagttaccgggctcttctattcctggaatgttc 543 Query: 361 ccgaacatgctcccttttgctgttggacagttcaaccccctcatcatgcagccacaagcc 420 |||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||| Sbjct: 544 ccgaacatgctcccttttgctgatggacagatcaatcccctcgtcatgcagccacaagcc 603 Query: 421 atgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatct 480 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 604 atgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggccttcccccatct 663 Query: 481 gctaatgaacagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 gctaatgaacagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaac 723 Query: 541 actgctggtccaggtgatgctgttcttaatgtgtacataaaccatga 587 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 actgctggtccaggtgatgctgttcttaatgtgtacataaaccatga 770
>dbj|AK066311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068A09, full insert sequence Length = 2841 Score = 281 bits (142), Expect = 1e-72 Identities = 232/262 (88%) Strand = Plus / Plus Query: 326 gtcagttaccgggctcttctattcctggaatgttcccgaacatgctcccttttgctgttg 385 ||||||| |||||| || |||||||||||||||| || ||||||||||| | | ||||| Sbjct: 1601 gtcagtttccgggcactgctattcctggaatgtttccaaacatgctcccgatgggtgttg 1660 Query: 386 gacagttcaaccccctcatcatgcagccacaagccatgactcaacaggctactcggcatg 445 |||||||||| ||||| | || ||||| ||||| ||||| |||||||||||||| || | Sbjct: 1661 gacagttcaatccccttgttatccagccgcaagcaatgacgcaacaggctactcgacacg 1720 Query: 446 ctcggcgtgtttatgtcggtggtcttcccccatctgctaatgaacagtctgttgcaatat 505 | | ||||||||||| ||||| ||||| ||| |||||||||||||||| |||||||||| Sbjct: 1721 cgagacgtgtttatgttggtggacttcctccaactgctaatgaacagtcagttgcaatat 1780 Query: 506 actttaatcaagtcatggctgctattggaggaaacactgctggtccaggtgatgctgttc 565 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 1781 actttaatcaagtcatggctgctattggaggaaatactgctggtccaggtgacgctgttc 1840 Query: 566 ttaatgtgtacataaaccatga 587 ||||||| |||||||||||||| Sbjct: 1841 ttaatgtctacataaaccatga 1862 Score = 161 bits (81), Expect = 3e-36 Identities = 240/290 (82%), Gaps = 6/290 (2%) Strand = Plus / Plus Query: 42 agggacaaggnatcgggatcgtcaccaaaggcatcaccgtgagaaaagggagcaccgaga 101 |||||||||| |||||||||| ||||| |||||||||||||| | ||| || ||| |||| Sbjct: 284 agggacaagg-atcgggatcgccaccataggcatcaccgtgaaagaagagaacacagaga 342 Query: 102 ccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaaggagaagggaccgtga 161 || |||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||| Sbjct: 343 tcgctctgatgatcatgatcgccacagaagccgtgattctgaaaggagaagagaccatga 402 Query: 162 gagagatggacatcacaggcatcgctctcgttcacggtctcgttcaaggggcagggat-- 219 | ||||| | || ||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 403 acgggatgggcgtcgcaggcatcggtctcgctcacgctctcgttctaggggcagggatcg 462 Query: 220 --gatcacagatctcgatctcagtcaaaaagcaagcgagtcagtgggtttgacctgggac 277 |||| || ||||| |||| ||||||||||||||||| ||||| ||||| ||| | Sbjct: 463 cagatc-taggtctcgctctcgttcaaaaagcaagcgagttagtggatttgatatggcgc 521 Query: 278 caacagcacaatctgtagttcctcagttccctactattccaaccccaagt 327 | |||| ||| |||| ||||| || || ||| ||||||||||||||||| Sbjct: 522 ctccagctcaagctgtggttccacaatttcctgctattccaaccccaagt 571
>gb|AY104538.1| Zea mays PCO122195 mRNA sequence Length = 1262 Score = 274 bits (138), Expect = 3e-70 Identities = 250/288 (86%), Gaps = 12/288 (4%) Strand = Plus / Plus Query: 312 tattccaaccccaagtcagttaccgggctcttctattcct---------ggaatgttccc 362 |||||||||||||||||||||||| |||||||| ||||| || ||||| || Sbjct: 583 tattccaaccccaagtcagttaccaggctcttcgcttcctaacattggtggcatgtttcc 642 Query: 363 gaacatgctcccttttgctgttg---gacagttcaaccccctcatcatgcagccacaagc 419 |||||||||||||| | ||||| | |||||||| ||||| |||| ||||||||||| Sbjct: 643 aaacatgctccctttcggtgttgctgggcagttcaatccccttgtcatccagccacaagc 702 Query: 420 catgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatc 479 |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct: 703 aatgactcaacaggctactcgtcatgctcggcgtgtttatgtcggtggccttcctccatc 762 Query: 480 tgctaatgaacagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaa 539 |||||| |||||| | || ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 763 tgctaacgaacagacagtggcaatttactttaatcaagtcatggctgctattgggggaaa 822 Query: 540 cactgctggtccaggtgatgctgttcttaatgtgtacataaaccatga 587 ||||||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct: 823 cactgctggtccaggtgatgctgttctcaatgtatacataaatcatga 870 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 70 aggcatcaccgtgagaaaagggagcaccgagaccgtcctgatgatcac 117 |||||||||||||| | | |||| || ||||||||||||||||||||| Sbjct: 362 aggcatcaccgtgaaagacgggaacagcgagaccgtcctgatgatcac 409 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 tcgttcacggtctcgttcaagggg 212 |||||| ||||||||||||||||| Sbjct: 466 tcgttctcggtctcgttcaagggg 489
>gb|AY103558.1| Zea mays PCO134114 mRNA sequence Length = 1707 Score = 198 bits (100), Expect = 1e-47 Identities = 157/176 (89%) Strand = Plus / Plus Query: 409 cagccacaagccatgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggt 468 ||||||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||| Sbjct: 161 cagccacaagccatgacacaacaggctaccaggcatgctcggcgtgtctatgtgggtgga 220 Query: 469 cttcccccatctgctaatgaacagtctgttgcaatatactttaatcaagtcatggctgct 528 ||||| ||| |||||||||| ||| | ||||| |||| ||| ||| ||| ||||||||| Sbjct: 221 cttcctccaactgctaatgagcagaccgttgccatattcttcaatggagttatggctgct 280 Query: 529 attggaggaaacactgctggtccaggtgatgctgttcttaatgtgtacataaacca 584 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 281 attggaggaaacacagctggtccaggtgatgctgttcttaatgtctacataaacca 336
>gb|AY224501.1| Oryza sativa (japonica cultivar-group) isolate 31147 putative U2 snRNP auxiliary factor mRNA, partial cds Length = 993 Score = 196 bits (99), Expect = 6e-47 Identities = 159/179 (88%) Strand = Plus / Plus Query: 409 cagccacaagccatgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggt 468 ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 58 cagccacaagctatgacacaacaggctactcgacatgctaggcgtgtttatgttggtgga 117 Query: 469 cttcccccatctgctaatgaacagtctgttgcaatatactttaatcaagtcatggctgct 528 ||||| ||| |||||||||| || ||||||| ||||||| |||||||| ||||||||| Sbjct: 118 cttcctccaactgctaatgagcatactgttgctgtatacttcaatcaagttatggctgct 177 Query: 529 attggaggaaacactgctggtccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 178 gttggtggaaatacagctggtccaggtgatgctgttcttaatgtctacataaaccatga 236
>dbj|AK073768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H24, full insert sequence Length = 2016 Score = 196 bits (99), Expect = 6e-47 Identities = 159/179 (88%) Strand = Plus / Plus Query: 409 cagccacaagccatgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggt 468 ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 756 cagccacaagctatgacacaacaggctactcgacatgctaggcgtgtttatgttggtgga 815 Query: 469 cttcccccatctgctaatgaacagtctgttgcaatatactttaatcaagtcatggctgct 528 ||||| ||| |||||||||| || ||||||| ||||||| |||||||| ||||||||| Sbjct: 816 cttcctccaactgctaatgagcatactgttgctgtatacttcaatcaagttatggctgct 875 Query: 529 attggaggaaacactgctggtccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 876 gttggtggaaatacagctggtccaggtgatgctgttcttaatgtctacataaaccatga 934 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 135 tgattctgaaaggagaagggaccgtgagagagatggacatcacaggcatcgctctcg 191 |||||||||||||||||| |||||||| |||||||| || | ||||||||| ||||| Sbjct: 476 tgattctgaaaggagaagagaccgtgacagagatggtcaccgcaggcatcgatctcg 532
>dbj|AK059255.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H08, full insert sequence Length = 2177 Score = 196 bits (99), Expect = 6e-47 Identities = 159/179 (88%) Strand = Plus / Plus Query: 409 cagccacaagccatgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggt 468 ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 755 cagccacaagctatgacacaacaggctactcgacatgctaggcgtgtttatgttggtgga 814 Query: 469 cttcccccatctgctaatgaacagtctgttgcaatatactttaatcaagtcatggctgct 528 ||||| ||| |||||||||| || ||||||| ||||||| |||||||| ||||||||| Sbjct: 815 cttcctccaactgctaatgagcatactgttgctgtatacttcaatcaagttatggctgct 874 Query: 529 attggaggaaacactgctggtccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 875 gttggtggaaatacagctggtccaggtgatgctgttcttaatgtctacataaaccatga 933 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 135 tgattctgaaaggagaagggaccgtgagagagatggacatcacaggcatcgctctcg 191 |||||||||||||||||| |||||||| |||||||| || | ||||||||| ||||| Sbjct: 475 tgattctgaaaggagaagagaccgtgacagagatggtcaccgcaggcatcgatctcg 531
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0064H09, complete sequence Length = 146742 Score = 163 bits (82), Expect = 8e-37 Identities = 94/98 (95%) Strand = Plus / Plus Query: 490 cagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaacactgctggt 549 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 22525 cagtcagttgcaatatactttaatcaagtcatggctgctattggaggaaatactgctggt 22584 Query: 550 ccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||||||| |||||||||||||| |||||||||||||| Sbjct: 22585 ccaggtgacgctgttcttaatgtctacataaaccatga 22622 Score = 99.6 bits (50), Expect = 1e-17 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Plus Query: 42 agggacaaggnatcgggatcgtcaccaaaggcatcaccgtgagaaaagggagcaccgaga 101 |||||||||| |||||||||| ||||| |||||||||||||| | ||| || ||| |||| Sbjct: 20148 agggacaagg-atcgggatcgccaccataggcatcaccgtgaaagaagagaacacagaga 20206 Query: 102 ccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaagg 147 || |||||||||| ||||| |||||||||||||||||||||||| Sbjct: 20207 tcgctctgatgatcatgatcgccacagaagccgtgattctgaaagg 20252 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 326 gtcagttaccgggctcttctattcctggaatgttcccgaacatgctccc 374 ||||||| |||||| || |||||||||||||||| || ||||||||||| Sbjct: 22032 gtcagtttccgggcactgctattcctggaatgtttccaaacatgctccc 22080 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 430 caggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatctgctaatgaa 489 ||||||||||| || || | ||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 22327 caggctactcgacacgcgagacgtgtttatgttggtggacttcctccaactgctaatgaa 22386 Query: 490 cag 492 ||| Sbjct: 22387 cag 22389 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 177 caggcatcgctctcgttcacggtctcgttcaaggggcagggat 219 ||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 20469 caggcatcggtctcgctcacgctctcgttctaggggcagggat 20511 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 247 agcaagcgagtcagtgggtttgacctgggaccaacagcacaatctgtagttcctcagttc 306 ||||||||||| ||||| ||||| ||| || |||| ||| |||| ||||| || || Sbjct: 20922 agcaagcgagttagtggatttgatatggcgcctccagctcaagctgtggttccacaattt 20981 Query: 307 cctactattccaaccccaagt 327 ||| ||||||||||||||||| Sbjct: 20982 cctgctattccaaccccaagt 21002
>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence Length = 157539 Score = 163 bits (82), Expect = 8e-37 Identities = 94/98 (95%) Strand = Plus / Plus Query: 490 cagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaacactgctggt 549 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 130143 cagtcagttgcaatatactttaatcaagtcatggctgctattggaggaaatactgctggt 130202 Query: 550 ccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||||||| |||||||||||||| |||||||||||||| Sbjct: 130203 ccaggtgacgctgttcttaatgtctacataaaccatga 130240 Score = 99.6 bits (50), Expect = 1e-17 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Plus Query: 42 agggacaaggnatcgggatcgtcaccaaaggcatcaccgtgagaaaagggagcaccgaga 101 |||||||||| |||||||||| ||||| |||||||||||||| | ||| || ||| |||| Sbjct: 127766 agggacaagg-atcgggatcgccaccataggcatcaccgtgaaagaagagaacacagaga 127824 Query: 102 ccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaagg 147 || |||||||||| ||||| |||||||||||||||||||||||| Sbjct: 127825 tcgctctgatgatcatgatcgccacagaagccgtgattctgaaagg 127870 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 326 gtcagttaccgggctcttctattcctggaatgttcccgaacatgctccc 374 ||||||| |||||| || |||||||||||||||| || ||||||||||| Sbjct: 129650 gtcagtttccgggcactgctattcctggaatgtttccaaacatgctccc 129698 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 430 caggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatctgctaatgaa 489 ||||||||||| || || | ||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 129945 caggctactcgacacgcgagacgtgtttatgttggtggacttcctccaactgctaatgaa 130004 Query: 490 cag 492 ||| Sbjct: 130005 cag 130007 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 177 caggcatcgctctcgttcacggtctcgttcaaggggcagggat 219 ||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 128087 caggcatcggtctcgctcacgctctcgttctaggggcagggat 128129 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 247 agcaagcgagtcagtgggtttgacctgggaccaacagcacaatctgtagttcctcagttc 306 ||||||||||| ||||| ||||| ||| || |||| ||| |||| ||||| || || Sbjct: 128540 agcaagcgagttagtggatttgatatggcgcctccagctcaagctgtggttccacaattt 128599 Query: 307 cctactattccaaccccaagt 327 ||| ||||||||||||||||| Sbjct: 128600 cctgctattccaaccccaagt 128620
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 163 bits (82), Expect = 8e-37 Identities = 94/98 (95%) Strand = Plus / Plus Query: 490 cagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaacactgctggt 549 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 26719580 cagtcagttgcaatatactttaatcaagtcatggctgctattggaggaaatactgctggt 26719639 Query: 550 ccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||||||| |||||||||||||| |||||||||||||| Sbjct: 26719640 ccaggtgacgctgttcttaatgtctacataaaccatga 26719677 Score = 117 bits (59), Expect = 4e-23 Identities = 89/99 (89%) Strand = Plus / Minus Query: 489 acagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaacactgctgg 548 |||| ||||||| ||||||| |||||||| ||||||||| |||| ||||| || ||||| Sbjct: 24294703 acagactgttgctgtatacttcaatcaagttatggctgctgttggtggaaatacagctgg 24294644 Query: 549 tccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||||||||||||||||||||||| |||||||||||||| Sbjct: 24294643 tccaggtgatgctgttcttaatgtctacataaaccatga 24294605 Score = 99.6 bits (50), Expect = 1e-17 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Plus Query: 42 agggacaaggnatcgggatcgtcaccaaaggcatcaccgtgagaaaagggagcaccgaga 101 |||||||||| |||||||||| ||||| |||||||||||||| | ||| || ||| |||| Sbjct: 26717203 agggacaagg-atcgggatcgccaccataggcatcaccgtgaaagaagagaacacagaga 26717261 Query: 102 ccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaagg 147 || |||||||||| ||||| |||||||||||||||||||||||| Sbjct: 26717262 tcgctctgatgatcatgatcgccacagaagccgtgattctgaaagg 26717307 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 409 cagccacaagccatgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggt 468 ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 24294874 cagccacaagctatgacacaacaggctactcgacatgctaggcgtgtttatgttggtgga 24294815 Query: 469 cttcccccatctgctaatga 488 ||||| ||| |||||||||| Sbjct: 24294814 cttcctccaactgctaatga 24294795 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 326 gtcagttaccgggctcttctattcctggaatgttcccgaacatgctccc 374 ||||||| |||||| || |||||||||||||||| || ||||||||||| Sbjct: 26719087 gtcagtttccgggcactgctattcctggaatgtttccaaacatgctccc 26719135 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 430 caggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatctgctaatgaa 489 ||||||||||| || || | ||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 26719382 caggctactcgacacgcgagacgtgtttatgttggtggacttcctccaactgctaatgaa 26719441 Query: 490 cag 492 ||| Sbjct: 26719442 cag 26719444 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 177 caggcatcgctctcgttcacggtctcgttcaaggggcagggat 219 ||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 26717524 caggcatcggtctcgctcacgctctcgttctaggggcagggat 26717566 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 247 agcaagcgagtcagtgggtttgacctgggaccaacagcacaatctgtagttcctcagttc 306 ||||||||||| ||||| ||||| ||| || |||| ||| |||| ||||| || || Sbjct: 26717977 agcaagcgagttagtggatttgatatggcgcctccagctcaagctgtggttccacaattt 26718036 Query: 307 cctactattccaaccccaagt 327 ||| ||||||||||||||||| Sbjct: 26718037 cctgctattccaaccccaagt 26718057
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 163 bits (82), Expect = 8e-37 Identities = 94/98 (95%) Strand = Plus / Plus Query: 490 cagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaacactgctggt 549 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 27045130 cagtcagttgcaatatactttaatcaagtcatggctgctattggaggaaatactgctggt 27045189 Query: 550 ccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||||||| |||||||||||||| |||||||||||||| Sbjct: 27045190 ccaggtgacgctgttcttaatgtctacataaaccatga 27045227 Score = 117 bits (59), Expect = 4e-23 Identities = 89/99 (89%) Strand = Plus / Minus Query: 489 acagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaacactgctgg 548 |||| ||||||| ||||||| |||||||| ||||||||| |||| ||||| || ||||| Sbjct: 24606372 acagactgttgctgtatacttcaatcaagttatggctgctgttggtggaaatacagctgg 24606313 Query: 549 tccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||||||||||||||||||||||| |||||||||||||| Sbjct: 24606312 tccaggtgatgctgttcttaatgtctacataaaccatga 24606274 Score = 99.6 bits (50), Expect = 1e-17 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Plus Query: 42 agggacaaggnatcgggatcgtcaccaaaggcatcaccgtgagaaaagggagcaccgaga 101 |||||||||| |||||||||| ||||| |||||||||||||| | ||| || ||| |||| Sbjct: 27042753 agggacaagg-atcgggatcgccaccataggcatcaccgtgaaagaagagaacacagaga 27042811 Query: 102 ccgtcctgatgatcacgatcgtcacagaagccgtgattctgaaagg 147 || |||||||||| ||||| |||||||||||||||||||||||| Sbjct: 27042812 tcgctctgatgatcatgatcgccacagaagccgtgattctgaaagg 27042857 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 409 cagccacaagccatgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggt 468 ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 24606543 cagccacaagctatgacacaacaggctactcgacatgctaggcgtgtttatgttggtgga 24606484 Query: 469 cttcccccatctgctaatga 488 ||||| ||| |||||||||| Sbjct: 24606483 cttcctccaactgctaatga 24606464 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 326 gtcagttaccgggctcttctattcctggaatgttcccgaacatgctccc 374 ||||||| |||||| || |||||||||||||||| || ||||||||||| Sbjct: 27044637 gtcagtttccgggcactgctattcctggaatgtttccaaacatgctccc 27044685 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 430 caggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatctgctaatgaa 489 ||||||||||| || || | ||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 27044932 caggctactcgacacgcgagacgtgtttatgttggtggacttcctccaactgctaatgaa 27044991 Query: 490 cag 492 ||| Sbjct: 27044992 cag 27044994 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 177 caggcatcgctctcgttcacggtctcgttcaaggggcagggat 219 ||||||||| ||||| ||||| |||||||| |||||||||||| Sbjct: 27043074 caggcatcggtctcgctcacgctctcgttctaggggcagggat 27043116 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 247 agcaagcgagtcagtgggtttgacctgggaccaacagcacaatctgtagttcctcagttc 306 ||||||||||| ||||| ||||| ||| || |||| ||| |||| ||||| || || Sbjct: 27043527 agcaagcgagttagtggatttgatatggcgcctccagctcaagctgtggttccacaattt 27043586 Query: 307 cctactattccaaccccaagt 327 ||| ||||||||||||||||| Sbjct: 27043587 cctgctattccaaccccaagt 27043607
>gb|DQ019636.1| Triticum aestivum U2AF large subunit (U2AF65a) mRNA, complete cds Length = 2240 Score = 143 bits (72), Expect = 7e-31 Identities = 150/176 (85%) Strand = Plus / Plus Query: 409 cagccacaagccatgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggt 468 ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 859 cagccactagccatgacacaacaggctactcggcatgctcgtcgtgtttatgtcggtgga 918 Query: 469 cttcccccatctgctaatgaacagtctgttgcaatatactttaatcaagtcatggctgct 528 ||||| ||| || ||||||||| | ||||| ||| ||| |||||||| ||||||||| Sbjct: 919 cttcctccaatcgccaatgaacagacggttgctgtattcttcaatcaagttatggctgct 978 Query: 529 attggaggaaacactgctggtccaggtgatgctgttcttaatgtgtacataaacca 584 || ||||||||||| || || |||| |||| ||| ||||||| ||||||||||| Sbjct: 979 atcggaggaaacacatttgctctaggtcatgcagttgttaatgtatacataaacca 1034
>emb|Y18351.1|NPL18351 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large subunit 65a Length = 2108 Score = 127 bits (64), Expect = 4e-26 Identities = 139/164 (84%) Strand = Plus / Plus Query: 421 atgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatct 480 |||||||| |||||||| | ||||||||||| |||||||| ||||| ||||| || || Sbjct: 696 atgactcagcaggctaccagacatgctcggcgagtttatgttggtggacttcctcctact 755 Query: 481 gctaatgaacagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaac 540 || ||||||||||||||||| | | ||||| ||| |||||| ||| |||||||||||| Sbjct: 756 gcaaatgaacagtctgttgctaccttctttagtcatgtcatgtatgcaattggaggaaac 815 Query: 541 actgctggtccaggtgatgctgttcttaatgtgtacataaacca 584 |||||||||||||| ||||||||| | ||||| || |||||||| Sbjct: 816 actgctggtccaggggatgctgttgtcaatgtttatataaacca 859
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 117 bits (59), Expect = 4e-23 Identities = 89/99 (89%) Strand = Plus / Minus Query: 489 acagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaacactgctgg 548 |||| ||||||| ||||||| |||||||| ||||||||| |||| ||||| || ||||| Sbjct: 95812 acagactgttgctgtatacttcaatcaagttatggctgctgttggtggaaatacagctgg 95753 Query: 549 tccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||||||||||||||||||||||| |||||||||||||| Sbjct: 95752 tccaggtgatgctgttcttaatgtctacataaaccatga 95714 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 409 cagccacaagccatgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggt 468 ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 95983 cagccacaagctatgacacaacaggctactcgacatgctaggcgtgtttatgttggtgga 95924 Query: 469 cttcccccatctgctaatga 488 ||||| ||| |||||||||| Sbjct: 95923 cttcctccaactgctaatga 95904
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 117 bits (59), Expect = 4e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 489 acagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaacactgctgg 548 |||| ||||||| ||||||| |||||||| ||||||||| |||| ||||| || ||||| Sbjct: 114286 acagactgttgctgtatacttcaatcaagttatggctgctgttggtggaaatacagctgg 114345 Query: 549 tccaggtgatgctgttcttaatgtgtacataaaccatga 587 |||||||||||||||||||||||| |||||||||||||| Sbjct: 114346 tccaggtgatgctgttcttaatgtctacataaaccatga 114384 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 409 cagccacaagccatgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggt 468 ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 114115 cagccacaagctatgacacaacaggctactcgacatgctaggcgtgtttatgttggtgga 114174 Query: 469 cttcccccatctgctaatga 488 ||||| ||| |||||||||| Sbjct: 114175 cttcctccaactgctaatga 114194
>ref|NM_119833.2| Arabidopsis thaliana ATU2AF65A; RNA binding / nucleic acid binding AT4G36690 (ATU2AF65A) transcript variant AT4G36690.1 mRNA, complete cds Length = 1958 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 457 tatgtcggtggtcttcccccatctgctaatgaacagtctgttgcaatatactttaatcaa 516 ||||||||||| ||| |||| | || |||||||||||||| || | || |||| |||| Sbjct: 836 tatgtcggtgggctttcccctacggcaaatgaacagtctgtggctacattttttagtcaa 895 Query: 517 gtcatggctgctattggaggaaacactgctggtccaggtgatgctgttcttaatgtgtac 576 || ||||||||| |||| |||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 896 gttatggctgctgttggtggaaacactgctggtccaggtgatgcagttgttaatgtctac 955 Query: 577 ataaacca 584 |||||||| Sbjct: 956 ataaacca 963
>ref|NM_202966.1| Arabidopsis thaliana ATU2AF65A; RNA binding / nucleic acid binding AT4G36690 (ATU2AF65A) transcript variant AT4G36690.3 mRNA, complete cds Length = 2131 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 457 tatgtcggtggtcttcccccatctgctaatgaacagtctgttgcaatatactttaatcaa 516 ||||||||||| ||| |||| | || |||||||||||||| || | || |||| |||| Sbjct: 836 tatgtcggtgggctttcccctacggcaaatgaacagtctgtggctacattttttagtcaa 895 Query: 517 gtcatggctgctattggaggaaacactgctggtccaggtgatgctgttcttaatgtgtac 576 || ||||||||| |||| |||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 896 gttatggctgctgttggtggaaacactgctggtccaggtgatgcagttgttaatgtctac 955 Query: 577 ataaacca 584 |||||||| Sbjct: 956 ataaacca 963
>ref|NM_179178.1| Arabidopsis thaliana ATU2AF65A; RNA binding / nucleic acid binding AT4G36690 (ATU2AF65A) transcript variant AT4G36690.2 mRNA, complete cds Length = 2251 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 457 tatgtcggtggtcttcccccatctgctaatgaacagtctgttgcaatatactttaatcaa 516 ||||||||||| ||| |||| | || |||||||||||||| || | || |||| |||| Sbjct: 836 tatgtcggtgggctttcccctacggcaaatgaacagtctgtggctacattttttagtcaa 895 Query: 517 gtcatggctgctattggaggaaacactgctggtccaggtgatgctgttcttaatgtgtac 576 || ||||||||| |||| |||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 896 gttatggctgctgttggtggaaacactgctggtccaggtgatgcagttgttaatgtctac 955 Query: 577 ataaacca 584 |||||||| Sbjct: 956 ataaacca 963
>gb|BT000965.1| Arabidopsis thaliana clone C105231 putative splicing factor (At4g36690) mRNA, complete cds Length = 1753 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 457 tatgtcggtggtcttcccccatctgctaatgaacagtctgttgcaatatactttaatcaa 516 ||||||||||| ||| |||| | || |||||||||||||| || | || |||| |||| Sbjct: 724 tatgtcggtgggctttcccctacggcaaatgaacagtctgtggctacattttttagtcaa 783 Query: 517 gtcatggctgctattggaggaaacactgctggtccaggtgatgctgttcttaatgtgtac 576 || ||||||||| |||| |||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 784 gttatggctgctgttggtggaaacactgctggtccaggtgatgcagttgttaatgtctac 843 Query: 577 ataaacca 584 |||||||| Sbjct: 844 ataaacca 851
>gb|AY143980.1| Arabidopsis thaliana At4g35590/C7A10_670 mRNA, complete cds Length = 1722 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 457 tatgtcggtggtcttcccccatctgctaatgaacagtctgttgcaatatactttaatcaa 516 ||||||||||| ||| |||| | || |||||||||||||| || | || |||| |||| Sbjct: 724 tatgtcggtgggctttcccctacggcaaatgaacagtctgtggctacattttttagtcaa 783 Query: 517 gtcatggctgctattggaggaaacactgctggtccaggtgatgctgttcttaatgtgtac 576 || ||||||||| |||| |||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 784 gttatggctgctgttggtggaaacactgctggtccaggtgatgcagttgttaatgtctac 843 Query: 577 ataaacca 584 |||||||| Sbjct: 844 ataaacca 851
>gb|AY080711.1| Arabidopsis thaliana putative splicing factor (At4g36690) mRNA, complete cds Length = 2377 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 457 tatgtcggtggtcttcccccatctgctaatgaacagtctgttgcaatatactttaatcaa 516 ||||||||||| ||| |||| | || |||||||||||||| || | || |||| |||| Sbjct: 836 tatgtcggtgggctttcccctacggcaaatgaacagtctgtggctacattttttagtcaa 895 Query: 517 gtcatggctgctattggaggaaacactgctggtccaggtgatgctgttcttaatgtgtac 576 || ||||||||| |||| |||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 896 gttatggctgctgttggtggaaacactgctggtccaggtgatgcagttgttaatgtctac 955 Query: 577 ataaacca 584 |||||||| Sbjct: 956 ataaacca 963
>gb|AF462805.1|AF462805 Arabidopsis thaliana At4g35590/C7A10_670 mRNA, complete cds Length = 1959 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 457 tatgtcggtggtcttcccccatctgctaatgaacagtctgttgcaatatactttaatcaa 516 ||||||||||| ||| |||| | || |||||||||||||| || | || |||| |||| Sbjct: 837 tatgtcggtgggctttcccctacggcaaatgaacagtctgtggctacattttttagtcaa 896 Query: 517 gtcatggctgctattggaggaaacactgctggtccaggtgatgctgttcttaatgtgtac 576 || ||||||||| |||| |||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 897 gttatggctgctgttggtggaaacactgctggtccaggtgatgcagttgttaatgtctac 956 Query: 577 ataaacca 584 |||||||| Sbjct: 957 ataaacca 964
>emb|BX827587.1|CNS0A3Q8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS79ZE11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1740 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Plus Query: 457 tatgtcggtggtcttcccccatctgctaatgaacagtctgttgcaatatactttaatcaa 516 ||||||||||| ||| |||| | || |||||||||||||| || | || |||| |||| Sbjct: 486 tatgtcggtgggctttcccctacggcaaatgaacagtctgtggctacattttttagtcaa 545 Query: 517 gtcatggctgctattggaggaaacactgctggtccaggtgatgctgttcttaatgtgtac 576 || ||||||||| |||| |||||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 546 gttatggctgctgttggtggaaacactgctggtccaggtgatgcagttgttaatgtctac 605 Query: 577 ataaacca 584 |||||||| Sbjct: 606 ataaacca 613
>gb|BT013617.1| Lycopersicon esculentum clone 132418R, mRNA sequence Length = 2047 Score = 109 bits (55), Expect = 1e-20 Identities = 139/167 (83%) Strand = Plus / Plus Query: 421 atgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatct 480 ||||| ||||||||||| ||||||| ||||| |||||||||||||| ||||| | || Sbjct: 829 atgacacaacaggctacaaggcatgcccggcgagtttatgtcggtggacttcctgctact 888 Query: 481 gctaatgaacagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaac 540 | ||||||||||||||||| | | ||||| ||| || ||| |||| ||||||||||| Sbjct: 889 tcaaatgaacagtctgttgcgaccttctttagtcatgttatgtctgcaattggaggaaat 948 Query: 541 actgctggtccaggtgatgctgttcttaatgtgtacataaaccatga 587 || ||||||||||||||||||||| | ||||| || |||||| |||| Sbjct: 949 acagctggtccaggtgatgctgttgtcaatgtctatataaactatga 995
>ref|NM_104771.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G60900 mRNA, complete cds Length = 2085 Score = 103 bits (52), Expect = 6e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 421 atgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatct 480 |||||||||||||| ||| ||||||||||||| || ||||| ||||| ||||| ||| || Sbjct: 835 atgactcaacaggcaactaggcatgctcggcgagtctatgttggtggccttccaccaact 894 Query: 481 gctaatgaacagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaac 540 |||||||||||||| || ||| | ||||| ||||| ||| | || ||||| |||||| Sbjct: 895 gctaatgaacagtcggtgtcaacgttctttagccaagtgatgtcggccattgggggaaac 954 Query: 541 actgctggtccaggtgatgc 560 |||||||| ||||||||||| Sbjct: 955 actgctgggccaggtgatgc 974
>emb|Y18350.1|NPL18350 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large subunit 65b Length = 2204 Score = 101 bits (51), Expect = 3e-18 Identities = 138/167 (82%) Strand = Plus / Plus Query: 421 atgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatct 480 ||||| || |||||||| ||||||||||||| |||||||| ||||| ||||| | | Sbjct: 826 atgacacagcaggctaccaggcatgctcggcgagtttatgttggtggacttccggctcat 885 Query: 481 gctaatgaacagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaac 540 || ||||||||||||||||| | | ||||| ||| || ||| |||| |||||||||||| Sbjct: 886 gcaaatgaacagtctgttgcgaccttctttagtcatgttatgtctgcaattggaggaaac 945 Query: 541 actgctggtccaggtgatgctgttcttaatgtgtacataaaccatga 587 || ||||||||||| ||||||||| | ||||| || |||||| |||| Sbjct: 946 acagctggtccaggggatgctgttgtcaatgtctatataaactatga 992
>gb|AY140014.1| Arabidopsis thaliana putative U2 snRNP auxiliary factor (At1g60900) mRNA, complete cds Length = 2072 Score = 95.6 bits (48), Expect = 2e-16 Identities = 117/140 (83%) Strand = Plus / Plus Query: 421 atgactcaacaggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatct 480 |||||||||||||| ||| ||||||||| ||| || ||||| ||||| ||||| ||| || Sbjct: 835 atgactcaacaggcaactaggcatgctccgcgagtctatgttggtggccttccaccaact 894 Query: 481 gctaatgaacagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaac 540 |||||||||||||| || ||| | ||||| ||||| ||| | || ||||| |||||| Sbjct: 895 gctaatgaacagtcggtgtcaacgttctttagccaagtgatgtcggccattgggggaaac 954 Query: 541 actgctggtccaggtgatgc 560 |||||||| ||||||||||| Sbjct: 955 actgctgggccaggtgatgc 974
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 520 atggctgctattggaggaaacactgctggtccaggtgatgctgttcttaatgtgtacata 579 |||||| | |||||||||||||| ||||||||||||||||| ||| | ||||| ||||| Sbjct: 84900 atggctacaattggaggaaacaccgctggtccaggtgatgcagttgtgaatgtttacatt 84959 Query: 580 aaccatga 587 |||||||| Sbjct: 84960 aaccatga 84967
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2 Length = 198354 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 508 tttaatcaagtcatggctgctattggaggaaacactgctggtccaggt 555 |||| |||||| ||||||||| |||| ||||||||||||||||||||| Sbjct: 73642 tttagtcaagttatggctgctgttggtggaaacactgctggtccaggt 73689 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 551 caggtgatgctgttcttaatgtgtacataaacca 584 |||||||||| ||| ||||||| ||||||||||| Sbjct: 73770 caggtgatgcagttgttaatgtctacataaacca 73803
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85 Length = 198750 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 508 tttaatcaagtcatggctgctattggaggaaacactgctggtccaggt 555 |||| |||||| ||||||||| |||| ||||||||||||||||||||| Sbjct: 177086 tttagtcaagttatggctgctgttggtggaaacactgctggtccaggt 177039 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 551 caggtgatgctgttcttaatgtgtacataaacca 584 |||||||||| ||| ||||||| ||||||||||| Sbjct: 176958 caggtgatgcagttgttaatgtctacataaacca 176925
>gb|AC124956.29| Medicago truncatula clone mth2-14k24, complete sequence Length = 123871 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 517 gtcatggctgctattggaggaaacactgctggtccaggt 555 ||||||||| |||||||||||||||||||||||||||| Sbjct: 19002 gtcatggctaatattggaggaaacactgctggtccaggt 19040
>gb|AC018908.8|AC018908 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence Length = 102299 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 430 caggctactcggcatgctcggcgtgtttatgtcggtggtcttcccccatctgctaatgaa 489 ||||| ||| ||||||||||||| || ||||| ||||| ||||| ||| ||||||||||| Sbjct: 21307 caggcaactaggcatgctcggcgagtctatgttggtggccttccaccaactgctaatgaa 21366 Query: 490 cag 492 ||| Sbjct: 21367 cag 21369
>gb|AY106657.1| Zea mays PCO074093 mRNA sequence Length = 864 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 133 cgtgattctgaaaggagaagggaccgtgagagagatggacatcacaggcatcgctc 188 ||||||||||| |||||||| || ||||| |||||||| |||| ||||||||||| Sbjct: 637 cgtgattctgagaggagaagagatcgtgacagagatggtcatcgtaggcatcgctc 692
>gb|AC174607.1| Lycopersicon esculentum, complete sequence Length = 115283 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 430 caggctactcggcatgctcggcgtgtttatgtcggtggtcttcc 473 |||||||| ||||||| ||||| |||||||||||||| ||||| Sbjct: 89139 caggctacaaggcatgcccggcgagtttatgtcggtggacttcc 89182 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 489 acagtctgttgcaatatactttaatcaagtcatggctgctattggaggaaacactgctgg 548 |||||||||||| | | ||||| ||| || ||| |||| ||||||||||| || ||||| Sbjct: 91860 acagtctgttgcgaccttctttagtcatgttatgtctgcaattggaggaaatacagctgg 91919 Query: 549 tccaggt 555 ||||||| Sbjct: 91920 tccaggt 91926
>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence Length = 105308 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 442 catgctcggcgtgtttatgtcggtggtcttcccccatctgctaatgaacag 492 ||||||||||| |||||||| ||||| ||||| || |||| ||||||||| Sbjct: 65036 catgctcggcgagtttatgttggtggacttccgcctactgcaaatgaacag 65086 Score = 42.1 bits (21), Expect = 2.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 507 ctttaatcaagtcatggctgctattggaggaaacactgctggtccaggt 555 ||||| ||| |||||| ||| || |||||||| ||||||||||||||| Sbjct: 65815 ctttagtcatgtcatgtatgcaatcggaggaaatactgctggtccaggt 65863
>dbj|AP004953.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34A24, TM0129, complete sequence Length = 110487 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 529 attggaggaaacactgctggtccaggt 555 ||||| ||||||||||||||||||||| Sbjct: 4018 attgggggaaacactgctggtccaggt 4044
>gb|AC009236.4| Homo sapiens BAC clone RP11-421J10 from 2, complete sequence Length = 178911 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 339 ctcttctattcctggaatgttc 360 |||||||||||||||||||||| Sbjct: 104160 ctcttctattcctggaatgttc 104139
>gb|AC122746.7| Mus musculus chromosome 17, clone RP23-144A20, complete sequence Length = 218858 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 gacatcacaggcatcgctctc 190 ||||||||||||||||||||| Sbjct: 11485 gacatcacaggcatcgctctc 11465
>gb|AC154602.3| Mus musculus BAC clone RP23-343M11 from chromosome 17, complete sequence Length = 196564 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 gacatcacaggcatcgctctc 190 ||||||||||||||||||||| Sbjct: 184712 gacatcacaggcatcgctctc 184692
>ref|XM_520478.1| PREDICTED: Pan troglodytes similar to KIAA1815 protein (LOC464983), mRNA Length = 2874 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1187 tctattcctggaatgttccc 1168
>ref|XM_614526.2| PREDICTED: Bos taurus similar to putative aminopeptidase Fxna (LOC541094), mRNA Length = 2441 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 713 tctattcctggaatgttccc 694
>ref|XM_416174.1| PREDICTED: Gallus gallus similar to down-regulated in metastasis (LOC417933), mRNA Length = 9393 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 caaaggcatcaccgtgagaa 86 |||||||||||||||||||| Sbjct: 6828 caaaggcatcaccgtgagaa 6809
>gb|BC013094.1| Mus musculus minichromosome maintenance deficient 4 homolog (S. cerevisiae), mRNA (cDNA clone MGC:6023 IMAGE:3584640), complete cds Length = 3360 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2849 ctcttctattcctggaatgt 2868
>ref|NM_024896.2| Homo sapiens KIAA1815 (KIAA1815), mRNA Length = 5355 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1082 tctattcctggaatgttccc 1063
>ref|NM_008565.2| Mus musculus minichromosome maintenance deficient 4 homolog (S. cerevisiae) (Mcm4), mRNA Length = 3360 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2849 ctcttctattcctggaatgt 2868
>ref|XM_452435.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C05258g predicted mRNA Length = 4068 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 541 actgctggtccaggtgatgctgtt 564 ||||||| |||||||||||||||| Sbjct: 2362 actgctgatccaggtgatgctgtt 2385
>ref|XM_001002418.1| PREDICTED: Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, transcript variant 2 (D19Wsu12e), mRNA Length = 1980 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1075 tctattcctggaatgttccc 1056
>ref|XM_001002430.1| PREDICTED: Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, transcript variant 3 (D19Wsu12e), mRNA Length = 3016 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1075 tctattcctggaatgttccc 1056
>ref|XM_001002440.1| PREDICTED: Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, transcript variant 4 (D19Wsu12e), mRNA Length = 5394 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1075 tctattcctggaatgttccc 1056
>ref|XM_924551.2| PREDICTED: Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, transcript variant 9 (D19Wsu12e), mRNA Length = 1980 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1075 tctattcctggaatgttccc 1056
>ref|XM_924549.2| PREDICTED: Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, transcript variant 8 (D19Wsu12e), mRNA Length = 3016 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1075 tctattcctggaatgttccc 1056
>ref|XM_916878.2| PREDICTED: Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, transcript variant 6 (D19Wsu12e), mRNA Length = 5394 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1075 tctattcctggaatgttccc 1056
>ref|XM_900498.2| PREDICTED: Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, transcript variant 4 (D19Wsu12e), mRNA Length = 1980 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1075 tctattcctggaatgttccc 1056
>ref|XM_900496.2| PREDICTED: Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, transcript variant 3 (D19Wsu12e), mRNA Length = 3016 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1075 tctattcctggaatgttccc 1056
>ref|XM_358328.4| PREDICTED: Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, transcript variant 1 (D19Wsu12e), mRNA Length = 5394 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1075 tctattcctggaatgttccc 1056
>gb|AY364634.2| Rattus norvegicus FXNA mRNA, complete cds Length = 5095 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1027 tctattcctggaatgttccc 1008
>emb|CT010522.7| Mouse DNA sequence from clone RP23-310H3 on chromosome 16, complete sequence Length = 169798 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 16703 ctcttctattcctggaatgt 16722
>gb|AC024222.16| Homo sapiens 3 BAC RP11-282J12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 36195 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 caacagcacaatctgtagttcctc 301 ||||||||||||||| |||||||| Sbjct: 34761 caacagcacaatctgcagttcctc 34784
>gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, complete sequence Length = 222348 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 100107 ctcttctattcctggaatgt 100088
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 541 actgctggtccaggtgatgctgtt 564 ||||||| |||||||||||||||| Sbjct: 473861 actgctgatccaggtgatgctgtt 473884
>dbj|AK220442.1| Mus musculus mRNA for mKIAA4003 protein Length = 3283 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2795 ctcttctattcctggaatgt 2814
>dbj|AK127218.1| Homo sapiens cDNA FLJ45285 fis, clone BRHIP3002000 Length = 3554 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1071 tctattcctggaatgttccc 1052
>dbj|AK093217.1| Homo sapiens cDNA FLJ35898 fis, clone TESTI2009520 Length = 2054 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 449 tctattcctggaatgttccc 430
>emb|BX005126.10| Zebrafish DNA sequence from clone CH211-129O9 in linkage group 5, complete sequence Length = 160487 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 67772 tcgctctcgttcacggtctggttc 67749
>dbj|AK137206.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530045F12 product:hypothetical Peptidase M28 containing protein, full insert sequence Length = 4349 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1031 tctattcctggaatgttccc 1012
>gb|AC091785.5| Genomic sequence for Mus musculus, clone RP23-349P1, complete sequence Length = 178271 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcaaggggcagggatgatca 224 |||||||||||||||||||| Sbjct: 126856 tcaaggggcagggatgatca 126837
>dbj|AK135619.1| Mus musculus adult male adrenal gland cDNA, RIKEN full-length enriched library, clone:7330416M24 product:minichromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 1082 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 593 ctcttctattcctggaatgt 612
>dbj|AK135422.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820418C03 product:minichromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3283 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2795 ctcttctattcctggaatgt 2814
>dbj|AK141644.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030002M24 product:minichromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3382 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2894 ctcttctattcctggaatgt 2913
>dbj|AK146662.1| Mus musculus 16 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920040B04 product:minichromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3304 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2816 ctcttctattcctggaatgt 2835
>dbj|AK141132.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230065C15 product:minichromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3341 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2861 ctcttctattcctggaatgt 2880
>dbj|AK151499.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830031A12 product:minichromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3503 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2807 ctcttctattcctggaatgt 2826
>dbj|AK157725.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130008M16 product:minichromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3282 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2795 ctcttctattcctggaatgt 2814
>ref|XM_704613.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 9 (LOC573618), mRNA Length = 1418 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 829 tcgctctcgttcacggtctggttc 852
>ref|XM_704612.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 8 (LOC573618), mRNA Length = 1369 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 780 tcgctctcgttcacggtctggttc 803
>ref|XM_704611.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 7 (LOC573618), mRNA Length = 1312 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 723 tcgctctcgttcacggtctggttc 746
>ref|XM_704610.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 6 (LOC573618), mRNA Length = 1328 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 739 tcgctctcgttcacggtctggttc 762
>ref|XM_704609.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 5 (LOC573618), mRNA Length = 1437 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 848 tcgctctcgttcacggtctggttc 871
>ref|XM_692974.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 1 (LOC573618), mRNA Length = 816 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 720 tcgctctcgttcacggtctggttc 743
>ref|XM_704608.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 4 (LOC573618), mRNA Length = 1336 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 747 tcgctctcgttcacggtctggttc 770
>ref|XM_704607.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 3 (LOC573618), mRNA Length = 1394 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 805 tcgctctcgttcacggtctggttc 828
>ref|XM_704606.1| PREDICTED: Danio rerio similar to splicing factor, arginine/serine-rich 7, transcript variant 2 (LOC573618), mRNA Length = 1509 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 tcgctctcgttcacggtctcgttc 206 ||||||||||||||||||| |||| Sbjct: 920 tcgctctcgttcacggtctggttc 943
>dbj|AK036653.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830146H02 product:mini chromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3545 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2853 ctcttctattcctggaatgt 2872
>dbj|AK081674.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130065M15 product:BA207C16.3 (NOVEL PROTEIN SIMILAR TO PREDICTED YEAST, PLANT AND WORM PROTEINS) (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 2378 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 592 tctattcctggaatgttccc 573
>dbj|AK088796.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430026B21 product:mini chromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3301 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2813 ctcttctattcctggaatgt 2832
>dbj|AK050284.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730033N22 product:BA207C16.3 (NOVEL PROTEIN SIMILAR TO PREDICTED YEAST, PLANT AND WORM PROTEINS) (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 2858 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1071 tctattcctggaatgttccc 1052
>dbj|AK089999.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN full-length enriched library, clone:G430050N09 product:mini chromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3285 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2797 ctcttctattcctggaatgt 2816
>dbj|AK011743.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610042I15 product:mini chromosome maintenance deficient 4 homolog (S. cerevisiae), full insert sequence Length = 3316 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2828 ctcttctattcctggaatgt 2847
>dbj|AK041066.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530078M04 product:hypothetical Peptidase M28 containing protein, full insert sequence Length = 1951 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1046 tctattcctggaatgttccc 1027
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 agaagggaccgtgagagagatgga 171 ||||||||||| |||||||||||| Sbjct: 17506188 agaagggaccgagagagagatgga 17506211
>gb|AC092121.3| Homo sapiens chromosome 16 clone RP11-102D18, complete sequence Length = 150955 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 tcatgcagccacaagccatg 423 |||||||||||||||||||| Sbjct: 109835 tcatgcagccacaagccatg 109816
>ref|NM_184050.2| Rattus norvegicus putative aminopeptidase Fxna (Fxna), mRNA Length = 5095 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1027 tctattcctggaatgttccc 1008
>gb|BC086627.1| Mus musculus DNA segment, Chr 19, Wayne State University 12, expressed, mRNA (cDNA clone IMAGE:6409965) Length = 5048 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1016 tctattcctggaatgttccc 997
>dbj|AK129447.1| Mus musculus mRNA for mKIAA1815 protein Length = 5011 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 1003 tctattcctggaatgttccc 984
>gb|AC016950.8|AC016950 Homo sapiens 3 BAC RP11-239I11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159217 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 caacagcacaatctgtagttcctc 301 ||||||||||||||| |||||||| Sbjct: 158647 caacagcacaatctgcagttcctc 158624
>dbj|AK070901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073O19, full insert sequence Length = 457 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 agaagggaccgtgagagagatgga 171 ||||||||||| |||||||||||| Sbjct: 64 agaagggaccgagagagagatgga 41
>gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-369O21, complete sequence Length = 196933 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 cagccacaagccatgactca 428 |||||||||||||||||||| Sbjct: 87880 cagccacaagccatgactca 87899
>dbj|AB058718.2| Homo sapiens mRNA for KIAA1815 protein, partial cds Length = 5214 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 959 tctattcctggaatgttccc 940
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 agaagggaccgtgagagagatgga 171 ||||||||||| |||||||||||| Sbjct: 17460559 agaagggaccgagagagagatgga 17460582
>emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129619 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 agaagggaccgtgagagagatgga 171 ||||||||||| |||||||||||| Sbjct: 26218 agaagggaccgagagagagatgga 26195
>dbj|D26089.1|MUSMCDC21 Mus musculus mRNA for mcdc21 protein, complete cds Length = 3221 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcttctattcctggaatgt 358 |||||||||||||||||||| Sbjct: 2799 ctcttctattcctggaatgt 2818
>emb|AL834191.1|HSM805526 Homo sapiens mRNA; cDNA DKFZp762E096 (from clone DKFZp762E096) Length = 5008 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tctattcctggaatgttccc 362 |||||||||||||||||||| Sbjct: 714 tctattcctggaatgttccc 695 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,049,977 Number of Sequences: 3902068 Number of extensions: 4049977 Number of successful extensions: 71043 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70766 Number of HSP's gapped (non-prelim): 266 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)