| Clone Name | basd16f21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073751.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068J22, full insert sequence Length = 2655 Score = 720 bits (363), Expect = 0.0 Identities = 567/633 (89%), Gaps = 2/633 (0%) Strand = Plus / Plus Query: 1 actgcttcctgcctggtggcaacgggnggcttgtacaggccctggcagnanaatgtgccc 60 |||| ||| ||||||| ||||| || ||||||| ||||||||||||| | |||||||| Sbjct: 1220 actgtttcttgcctggcggcaatggtaggcttgtgcaggccctggcag-agaatgtgccg 1278 Query: 61 attgtttacgagnaggacagcgcacactatacggtatggaggggatggcgtgcaggtggt 120 |||||||||||| ||||||| |||||||||||| |||||||||||||| || |||||||| Sbjct: 1279 attgtttacgag-aggacagtgcacactatacgttatggaggggatggggttcaggtggt 1337 Query: 121 tgttaatggtggtcaggtgtatgaaggagacatggcgctgtgcactgtgccacttggggt 180 ||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1338 tgtcaatggtgggcaggtgtatgaaggcgacatggcgctgtgcactgttccacttggggt 1397 Query: 181 tctgaaaaatgggggtatcaagtttgtacctgagctgccacaaaggaagcttgatagtat 240 |||||||||||| || ||||||||||||||||||||||||| || || ||||||||||| Sbjct: 1398 tctgaaaaatggtggcgtcaagtttgtacctgagctgccacagagaaaacttgatagtat 1457 Query: 241 caagaaactaggctttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttg 300 || | |||||||||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct: 1458 taaaagactaggctttgggttgttgaacaaggttgcaatgttgtttcctcatgttttctg 1517 Query: 301 gagcaccgaccttgatacctttggacatctgaccgaaaatccaagtcgtcgaggggagtt 360 |||||| |||||||||||||||||||| ||||| ||| | ||||||| ||| || ||||| Sbjct: 1518 gagcactgaccttgatacctttggacacctgactgaagacccaagtcatcgtggagagtt 1577 Query: 361 ctttctgttctatagctatgcaacagtggctggtggtccattgttgatggcgttggttgc 420 ||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||| Sbjct: 1578 ctttctgttctatagttatgcaacagtggccggtggtccattgctgatggcactggttgc 1637 Query: 421 tggtgaggctgcccacaactttgaaaccacgcctccaactgatgctgtcagctctgttct 480 |||||| ||||||||||||||||||||||| || || |||||||||||||| |||||||| Sbjct: 1638 tggtgaagctgcccacaactttgaaaccacaccccctactgatgctgtcagttctgttct 1697 Query: 481 tcagatactgaggggtatctatgaaacacagggagttgaggtaccagatcctctacagag 540 |||||||||| |||||||||||| | || || ||||||| ||||||||||| ||||| Sbjct: 1698 caagatactgagaggtatctatgaacctcaaggtattgaggtcccagatcctctgcagag 1757 Query: 541 tgtttgcactagatggggcacagactctttcagtttaggttcatattcgcatgttgctgt 600 |||||| |||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| Sbjct: 1758 tgtttgtactagatggggcacagactccttcagtctaggttcgtattctcatgttgctgt 1817 Query: 601 tggagcatctggagatgactatgacatattagc 633 |||||||||||||||||||||||||||| |||| Sbjct: 1818 tggagcatctggagatgactatgacatactagc 1850
>ref|XM_473484.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2436 Score = 712 bits (359), Expect = 0.0 Identities = 566/633 (89%), Gaps = 2/633 (0%) Strand = Plus / Plus Query: 1 actgcttcctgcctggtggcaacgggnggcttgtacaggccctggcagnanaatgtgccc 60 |||| ||| ||||||| ||||| || ||||||| ||| ||||||||| | |||||||| Sbjct: 1157 actgtttcttgcctggcggcaatggtaggcttgtgcagtccctggcag-agaatgtgccg 1215 Query: 61 attgtttacgagnaggacagcgcacactatacggtatggaggggatggcgtgcaggtggt 120 |||||||||||| ||||||| |||||||||||| |||||||||||||| || |||||||| Sbjct: 1216 attgtttacgag-aggacagtgcacactatacgttatggaggggatggggttcaggtggt 1274 Query: 121 tgttaatggtggtcaggtgtatgaaggagacatggcgctgtgcactgtgccacttggggt 180 ||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1275 tgtcaatggtgggcaggtgtatgaaggcgacatggcgctgtgcactgttccacttggggt 1334 Query: 181 tctgaaaaatgggggtatcaagtttgtacctgagctgccacaaaggaagcttgatagtat 240 |||||||||||| || ||||||||||||||||||||||||| || || ||||||||||| Sbjct: 1335 tctgaaaaatggtggcgtcaagtttgtacctgagctgccacagagaaaacttgatagtat 1394 Query: 241 caagaaactaggctttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttg 300 || | |||||||||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct: 1395 taaaagactaggctttgggttgttgaacaaggttgcaatgttgtttcctcatgttttctg 1454 Query: 301 gagcaccgaccttgatacctttggacatctgaccgaaaatccaagtcgtcgaggggagtt 360 |||||| |||||||||||||||||||| ||||| ||| | ||||||| ||| || ||||| Sbjct: 1455 gagcactgaccttgatacctttggacacctgactgaagacccaagtcatcgtggagagtt 1514 Query: 361 ctttctgttctatagctatgcaacagtggctggtggtccattgttgatggcgttggttgc 420 ||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||| Sbjct: 1515 ctttctgttctatagttatgcaacagtggccggtggtccattgctgatggcactggttgc 1574 Query: 421 tggtgaggctgcccacaactttgaaaccacgcctccaactgatgctgtcagctctgttct 480 |||||| ||||||||||||||||||||||| || || |||||||||||||| |||||||| Sbjct: 1575 tggtgaagctgcccacaactttgaaaccacaccccctactgatgctgtcagttctgttct 1634 Query: 481 tcagatactgaggggtatctatgaaacacagggagttgaggtaccagatcctctacagag 540 |||||||||| |||||||||||| | || || ||||||| ||||||||||| ||||| Sbjct: 1635 caagatactgagaggtatctatgaacctcaaggtattgaggtcccagatcctctgcagag 1694 Query: 541 tgtttgcactagatggggcacagactctttcagtttaggttcatattcgcatgttgctgt 600 |||||| |||||||||||||||||||| |||||| ||||||| ||||| ||||||||||| Sbjct: 1695 tgtttgtactagatggggcacagactccttcagtctaggttcgtattctcatgttgctgt 1754 Query: 601 tggagcatctggagatgactatgacatattagc 633 |||||||||||||||||||||||||||| |||| Sbjct: 1755 tggagcatctggagatgactatgacatactagc 1787
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 545 bits (275), Expect = e-152 Identities = 443/497 (89%), Gaps = 2/497 (0%) Strand = Plus / Minus Query: 1 actgcttcctgcctggtggcaacgggnggcttgtacaggccctggcagnanaatgtgccc 60 |||| ||| ||||||| ||||| || ||||||| ||| ||||||||| | |||||||| Sbjct: 49659 actgtttcttgcctggcggcaatggtaggcttgtgcagtccctggcag-agaatgtgccg 49601 Query: 61 attgtttacgagnaggacagcgcacactatacggtatggaggggatggcgtgcaggtggt 120 |||||||||||| ||||||| |||||||||||| |||||||||||||| || |||||||| Sbjct: 49600 attgtttacgag-aggacagtgcacactatacgttatggaggggatggggttcaggtggt 49542 Query: 121 tgttaatggtggtcaggtgtatgaaggagacatggcgctgtgcactgtgccacttggggt 180 ||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 49541 tgtcaatggtgggcaggtgtatgaaggcgacatggcgctgtgcactgttccacttggggt 49482 Query: 181 tctgaaaaatgggggtatcaagtttgtacctgagctgccacaaaggaagcttgatagtat 240 |||||||||||| || ||||||||||||||||||||||||| || || ||||||||||| Sbjct: 49481 tctgaaaaatggtggcgtcaagtttgtacctgagctgccacagagaaaacttgatagtat 49422 Query: 241 caagaaactaggctttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttg 300 || | |||||||||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct: 49421 taaaagactaggctttgggttgttgaacaaggttgcaatgttgtttcctcatgttttctg 49362 Query: 301 gagcaccgaccttgatacctttggacatctgaccgaaaatccaagtcgtcgaggggagtt 360 |||||| |||||||||||||||||||| ||||| ||| | ||||||| ||| || ||||| Sbjct: 49361 gagcactgaccttgatacctttggacacctgactgaagacccaagtcatcgtggagagtt 49302 Query: 361 ctttctgttctatagctatgcaacagtggctggtggtccattgttgatggcgttggttgc 420 ||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||| Sbjct: 49301 ctttctgttctatagttatgcaacagtggccggtggtccattgctgatggcactggttgc 49242 Query: 421 tggtgaggctgcccacaactttgaaaccacgcctccaactgatgctgtcagctctgttct 480 |||||| ||||||||||||||||||||||| || || |||||||||||||| |||||||| Sbjct: 49241 tggtgaagctgcccacaactttgaaaccacaccccctactgatgctgtcagttctgttct 49182 Query: 481 tcagatactgaggggta 497 |||||||||| |||| Sbjct: 49181 caagatactgagaggta 49165 Score = 174 bits (88), Expect = 2e-40 Identities = 127/140 (90%) Strand = Plus / Minus Query: 494 ggtatctatgaaacacagggagttgaggtaccagatcctctacagagtgtttgcactaga 553 |||||||||||| | || || ||||||| ||||||||||| ||||||||||| |||||| Sbjct: 48842 ggtatctatgaacctcaaggtattgaggtcccagatcctctgcagagtgtttgtactaga 48783 Query: 554 tggggcacagactctttcagtttaggttcatattcgcatgttgctgttggagcatctgga 613 |||||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||| Sbjct: 48782 tggggcacagactccttcagtctaggttcgtattctcatgttgctgttggagcatctgga 48723 Query: 614 gatgactatgacatattagc 633 ||||||||||||||| |||| Sbjct: 48722 gatgactatgacatactagc 48703
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 545 bits (275), Expect = e-152 Identities = 443/497 (89%), Gaps = 2/497 (0%) Strand = Plus / Minus Query: 1 actgcttcctgcctggtggcaacgggnggcttgtacaggccctggcagnanaatgtgccc 60 |||| ||| ||||||| ||||| || ||||||| ||| ||||||||| | |||||||| Sbjct: 28042433 actgtttcttgcctggcggcaatggtaggcttgtgcagtccctggcag-agaatgtgccg 28042375 Query: 61 attgtttacgagnaggacagcgcacactatacggtatggaggggatggcgtgcaggtggt 120 |||||||||||| ||||||| |||||||||||| |||||||||||||| || |||||||| Sbjct: 28042374 attgtttacgag-aggacagtgcacactatacgttatggaggggatggggttcaggtggt 28042316 Query: 121 tgttaatggtggtcaggtgtatgaaggagacatggcgctgtgcactgtgccacttggggt 180 ||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 28042315 tgtcaatggtgggcaggtgtatgaaggcgacatggcgctgtgcactgttccacttggggt 28042256 Query: 181 tctgaaaaatgggggtatcaagtttgtacctgagctgccacaaaggaagcttgatagtat 240 |||||||||||| || ||||||||||||||||||||||||| || || ||||||||||| Sbjct: 28042255 tctgaaaaatggtggcgtcaagtttgtacctgagctgccacagagaaaacttgatagtat 28042196 Query: 241 caagaaactaggctttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttg 300 || | |||||||||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct: 28042195 taaaagactaggctttgggttgttgaacaaggttgcaatgttgtttcctcatgttttctg 28042136 Query: 301 gagcaccgaccttgatacctttggacatctgaccgaaaatccaagtcgtcgaggggagtt 360 |||||| |||||||||||||||||||| ||||| ||| | ||||||| ||| || ||||| Sbjct: 28042135 gagcactgaccttgatacctttggacacctgactgaagacccaagtcatcgtggagagtt 28042076 Query: 361 ctttctgttctatagctatgcaacagtggctggtggtccattgttgatggcgttggttgc 420 ||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||| Sbjct: 28042075 ctttctgttctatagttatgcaacagtggccggtggtccattgctgatggcactggttgc 28042016 Query: 421 tggtgaggctgcccacaactttgaaaccacgcctccaactgatgctgtcagctctgttct 480 |||||| ||||||||||||||||||||||| || || |||||||||||||| |||||||| Sbjct: 28042015 tggtgaagctgcccacaactttgaaaccacaccccctactgatgctgtcagttctgttct 28041956 Query: 481 tcagatactgaggggta 497 |||||||||| |||| Sbjct: 28041955 caagatactgagaggta 28041939 Score = 174 bits (88), Expect = 2e-40 Identities = 127/140 (90%) Strand = Plus / Minus Query: 494 ggtatctatgaaacacagggagttgaggtaccagatcctctacagagtgtttgcactaga 553 |||||||||||| | || || ||||||| ||||||||||| ||||||||||| |||||| Sbjct: 28041616 ggtatctatgaacctcaaggtattgaggtcccagatcctctgcagagtgtttgtactaga 28041557 Query: 554 tggggcacagactctttcagtttaggttcatattcgcatgttgctgttggagcatctgga 613 |||||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||| Sbjct: 28041556 tggggcacagactccttcagtctaggttcgtattctcatgttgctgttggagcatctgga 28041497 Query: 614 gatgactatgacatattagc 633 ||||||||||||||| |||| Sbjct: 28041496 gatgactatgacatactagc 28041477
>ref|NM_111874.1| Arabidopsis thaliana FLD (FLOWERING LOCUS D); amine oxidase/ oxidoreductase AT3G10390 (FLD) mRNA, complete cds Length = 2370 Score = 67.9 bits (34), Expect = 4e-08 Identities = 154/194 (79%) Strand = Plus / Plus Query: 227 aagcttgatagtatcaagaaactaggctttgggttgttaaacaaggttgcgatgttgttt 286 ||||||||| |||| |||| | |||| |||||||| | || || ||||| ||| | ||| Sbjct: 1339 aagcttgattgtataaagagattaggttttgggttactgaataaagttgcaatgctcttt 1398 Query: 287 cctcatgtgttttggagcaccgaccttgatacctttggacatctgaccgaaaatccaagt 346 || |||| ||||||||||| || || ||||||||||| ||||| || || |||| | Sbjct: 1399 ccgtatgtattttggagcacagatctcgatacctttgggcatcttactgaggatccgaac 1458 Query: 347 cgtcgaggggagttctttctgttctatagctatgcaacagtggctggtggtccattgttg 406 |||||| || |||||||||||||||||||| ||| | || ||||||||| | | ||| Sbjct: 1459 tatcgaggtgaattctttctgttctatagctacgcaccggttgctggtggtgctctcttg 1518 Query: 407 atggcgttggttgc 420 || ||||||||||| Sbjct: 1519 atcgcgttggttgc 1532
>gb|AY849997.1| Arabidopsis thaliana ecotype Lz-0 flowering locus D (FLD) gene, complete cds Length = 3321 Score = 67.9 bits (34), Expect = 4e-08 Identities = 154/194 (79%) Strand = Plus / Plus Query: 227 aagcttgatagtatcaagaaactaggctttgggttgttaaacaaggttgcgatgttgttt 286 ||||||||| |||| |||| | |||| |||||||| | || || ||||| ||| | ||| Sbjct: 2102 aagcttgattgtataaagagattaggttttgggttactgaataaagttgcaatgctcttt 2161 Query: 287 cctcatgtgttttggagcaccgaccttgatacctttggacatctgaccgaaaatccaagt 346 || |||| ||||||||||| || || ||||||||||| ||||| || || |||| | Sbjct: 2162 ccgtatgtattttggagcacagatctcgatacctttgggcatcttactgaggatccgaac 2221 Query: 347 cgtcgaggggagttctttctgttctatagctatgcaacagtggctggtggtccattgttg 406 |||||| || |||||||||||||||||||| ||| | || ||||||||| | | ||| Sbjct: 2222 tatcgaggtgaattctttctgttctatagctacgcaccggttgctggtggtgctctcttg 2281 Query: 407 atggcgttggttgc 420 || ||||||||||| Sbjct: 2282 atcgcgttggttgc 2295
>gb|AY849996.1| Arabidopsis thaliana ecotype Landsberg erecta flowering locus D (FLD) gene, complete cds Length = 3322 Score = 67.9 bits (34), Expect = 4e-08 Identities = 154/194 (79%) Strand = Plus / Plus Query: 227 aagcttgatagtatcaagaaactaggctttgggttgttaaacaaggttgcgatgttgttt 286 ||||||||| |||| |||| | |||| |||||||| | || || ||||| ||| | ||| Sbjct: 2103 aagcttgattgtataaagagattaggttttgggttactgaataaagttgcaatgctcttt 2162 Query: 287 cctcatgtgttttggagcaccgaccttgatacctttggacatctgaccgaaaatccaagt 346 || |||| ||||||||||| || || ||||||||||| ||||| || || |||| | Sbjct: 2163 ccgtatgtattttggagcacagatctcgatacctttgggcatcttactgaggatccgaac 2222 Query: 347 cgtcgaggggagttctttctgttctatagctatgcaacagtggctggtggtccattgttg 406 |||||| || |||||||||||||||||||| ||| | || ||||||||| | | ||| Sbjct: 2223 tatcgaggtgaattctttctgttctatagctacgcaccggttgctggtggtgctctcttg 2282 Query: 407 atggcgttggttgc 420 || ||||||||||| Sbjct: 2283 atcgcgttggttgc 2296
>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence Length = 118107 Score = 67.9 bits (34), Expect = 4e-08 Identities = 154/194 (79%) Strand = Plus / Minus Query: 227 aagcttgatagtatcaagaaactaggctttgggttgttaaacaaggttgcgatgttgttt 286 ||||||||| |||| |||| | |||| |||||||| | || || ||||| ||| | ||| Sbjct: 116726 aagcttgattgtataaagagattaggttttgggttactgaataaagttgcaatgctcttt 116667 Query: 287 cctcatgtgttttggagcaccgaccttgatacctttggacatctgaccgaaaatccaagt 346 || |||| ||||||||||| || || ||||||||||| ||||| || || |||| | Sbjct: 116666 ccgtatgtattttggagcacagatctcgatacctttgggcatcttactgaggatccgaac 116607 Query: 347 cgtcgaggggagttctttctgttctatagctatgcaacagtggctggtggtccattgttg 406 |||||| || |||||||||||||||||||| ||| | || ||||||||| | | ||| Sbjct: 116606 tatcgaggtgaattctttctgttctatagctacgcaccggttgctggtggtgctctcttg 116547 Query: 407 atggcgttggttgc 420 || ||||||||||| Sbjct: 116546 atcgcgttggttgc 116533
>gb|DQ323045.1| Phaseolus vulgaris clone BAC-71F18, complete sequence Length = 157468 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 254 tttgggttgttaaacaaggttgcgatgttgtttcc 288 ||||||||||| ||||||||||| ||||||||||| Sbjct: 151102 tttgggttgttgaacaaggttgcaatgttgtttcc 151068 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 591 atgttgctgttggagcatctggagatgactatgacat 627 |||||||||||||| | || |||||||| |||||||| Sbjct: 150765 atgttgctgttggatcttcaggagatgattatgacat 150729
>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence, complete sequence Length = 87937 Score = 48.1 bits (24), Expect = 0.035 Identities = 84/104 (80%) Strand = Plus / Minus Query: 227 aagcttgatagtatcaagaaactaggctttgggttgttaaacaaggttgcgatgttgttt 286 ||||||||| |||| |||| | |||| |||||||| | || || ||||| ||| | ||| Sbjct: 135 aagcttgattgtataaagagattaggttttgggttactgaataaagttgcaatgctcttt 76 Query: 287 cctcatgtgttttggagcaccgaccttgatacctttggacatct 330 || |||| ||||||||||| || || ||||||||||| ||||| Sbjct: 75 ccgtatgtattttggagcacagatctcgatacctttgggcatct 32
>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5 Length = 349742 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 tatcaagaaactaggctttggg 259 |||||||||||||||||||||| Sbjct: 51443 tatcaagaaactaggctttggg 51464
>ref|XM_480049.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2264 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 254 tttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttgg 301 ||||||||||| ||||| || || ||| ||||||| ||||| |||||| Sbjct: 1108 tttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgg 1155
>ref|XM_480050.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2722 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 254 tttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttgg 301 ||||||||||| ||||| || || ||| ||||||| ||||| |||||| Sbjct: 1348 tttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgg 1395
>gb|AY695112.1| Pseudomonas luteola beta-lactamase precursor Lut-1 gene, complete cds Length = 891 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 aaccacgcctccaactgatgctgt 468 |||||||||| ||||||||||||| Sbjct: 650 aaccacgcctgcaactgatgctgt 627
>gb|AY448016.1|AY448010S7 Ipomoea trifida haplotype S1 self-incompatibility (S-) locus, contig SR7 Length = 55205 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gatagtatcaagaaactagg 252 |||||||||||||||||||| Sbjct: 10428 gatagtatcaagaaactagg 10447
>emb|AL450267.10| Human DNA sequence from clone RP11-344B23 on chromosome 9 Contains the 3' end of the PAX5 gene for paired box gene 5 (B-cell lineage specific activator protein) (BSAP), complete sequence Length = 125110 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 tcagctctgttcttcagata 487 |||||||||||||||||||| Sbjct: 121535 tcagctctgttcttcagata 121554
>emb|AL445493.8| Human DNA sequence from clone RP11-164O23 on chromosome 1 Contains two novel genes, the PFKFB2 gene for 6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 2, the C4BPB gene for complement component 4 binding protein beta, the C4BPA gene for complement component 4 binding protein alpha, a novel pseudogene and a complement component 4 binding protein pseudogene, complete sequence Length = 158939 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tgttgtttcctcatgtgttt 298 |||||||||||||||||||| Sbjct: 118879 tgttgtttcctcatgtgttt 118898
>emb|AL357503.12| Human DNA sequence from clone RP5-899C14 on chromosome 20 Contains the 3' end of the C20orf101 gene, complete sequence Length = 133288 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ggagatgactatgacatatt 630 |||||||||||||||||||| Sbjct: 109115 ggagatgactatgacatatt 109096
>ref|NM_026937.1| Mus musculus activating signal cointegrator 1 complex subunit 1 (Ascc1), mRNA Length = 1524 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 ttggggttctgaaaaatgggggtatcaa 201 ||||||||||||||||||| | |||||| Sbjct: 617 ttggggttctgaaaaatggtgctatcaa 590
>dbj|AK139944.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020041B07 product:activating signal cointegrator 1 complex subunit 1, full insert sequence Length = 1492 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 ttggggttctgaaaaatgggggtatcaa 201 ||||||||||||||||||| | |||||| Sbjct: 638 ttggggttctgaaaaatggtgctatcaa 611
>gb|AC152929.2| Xenopus tropicalis clone ISB1-11B9, complete sequence Length = 68368 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 ttcagatactgaggggtatc 499 |||||||||||||||||||| Sbjct: 59456 ttcagatactgaggggtatc 59475
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ctgaaaaatgggggtatcaa 201 |||||||||||||||||||| Sbjct: 2942435 ctgaaaaatgggggtatcaa 2942416
>dbj|AK007519.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810015P09 product:CGI-18 PROTEIN (ASC-1 COMPLEX SUBUNIT P50) homolog [Homo sapiens], full insert sequence Length = 1466 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 ttggggttctgaaaaatgggggtatcaa 201 ||||||||||||||||||| | |||||| Sbjct: 635 ttggggttctgaaaaatggtgctatcaa 608
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Minus Query: 254 tttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttgg 301 ||||||||||| ||||| || || ||| ||||||| ||||| |||||| Sbjct: 2381586 tttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgg 2381539
>gb|AC096718.3| Homo sapiens BAC clone RP11-10P19 from 4, complete sequence Length = 166745 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ttgtttcctcatgtgttttg 300 |||||||||||||||||||| Sbjct: 60369 ttgtttcctcatgtgttttg 60388
>dbj|AK179536.1| Mus musculus cDNA, clone:Y0G0110M15, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000050516, based on BLAT search Length = 212 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 ttggggttctgaaaaatgggggtatcaa 201 ||||||||||||||||||| | |||||| Sbjct: 151 ttggggttctgaaaaatggtgctatcaa 124
>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0025F03 Length = 138042 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Minus Query: 254 tttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttgg 301 ||||||||||| ||||| || || ||| ||||||| ||||| |||||| Sbjct: 57556 tttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgg 57509
>dbj|AP005542.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473D02 Length = 146185 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Minus Query: 254 tttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttgg 301 ||||||||||| ||||| || || ||| ||||||| ||||| |||||| Sbjct: 129085 tttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgg 129038
>dbj|AK120532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128B21, full insert sequence Length = 2722 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 254 tttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttgg 301 ||||||||||| ||||| || || ||| ||||||| ||||| |||||| Sbjct: 1348 tttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgg 1395
>emb|CT573339.6| M.truncatula DNA sequence from clone MTH2-82H11 on chromosome 3, complete sequence Length = 107004 Score = 40.1 bits (20), Expect = 8.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 266 aacaaggttgcgatgttgtttcctcatgtgttttgg 301 ||||| ||||| ||| | |||||||||||||||||| Sbjct: 58691 aacaaagttgcaatggtttttcctcatgtgttttgg 58726
>dbj|AK066792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079C13, full insert sequence Length = 2264 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 254 tttgggttgttaaacaaggttgcgatgttgtttcctcatgtgttttgg 301 ||||||||||| ||||| || || ||| ||||||| ||||| |||||| Sbjct: 1108 tttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgg 1155
>gb|AC154040.7| Mus musculus 10 BAC RP23-348E15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210862 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 ttggggttctgaaaaatgggggtatcaa 201 ||||||||||||||||||| | |||||| Sbjct: 48955 ttggggttctgaaaaatggtgctatcaa 48982
>emb|AL772130.15| Mouse DNA sequence from clone RP23-230O14 on chromosome 4, complete sequence Length = 72407 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 ggttgcgatgttgtttcctc 290 |||||||||||||||||||| Sbjct: 66115 ggttgcgatgttgtttcctc 66134
>gb|BC030905.1| Mus musculus activating signal cointegrator 1 complex subunit 1, mRNA (cDNA clone MGC:31553 IMAGE:4503445), complete cds Length = 1524 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 ttggggttctgaaaaatgggggtatcaa 201 ||||||||||||||||||| | |||||| Sbjct: 617 ttggggttctgaaaaatggtgctatcaa 590 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,203,392 Number of Sequences: 3902068 Number of extensions: 5203392 Number of successful extensions: 92471 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92355 Number of HSP's gapped (non-prelim): 111 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)