ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16f11 |
|---|---|
| Clone Library Name | barley_pub |
>ELOA1_RAT (Q63187) Transcription elongation factor B polypeptide 3 (RNA| polymerase II transcription factor SIII subunit A) (SIII p110) (Elongin A) (EloA) (Elongin 110 kDa subunit) Length = 773 Score = 45.1 bits (105), Expect = 1e-04 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%) Frame = +3 Query: 54 GKKMEPERKPLSLLELCVRSAVDNLRYMNSVDNLEMGLLKRILPHCTLEQLTHIESCTQM 233 G K K ++L + C+R +N+ + V + +L+ +L CT +QL IE C + Sbjct: 538 GSKCAYLPKMMTLHQQCIRVLKNNIDSIFEVGGVPYSVLEPVLERCTPDQLYRIEECNHV 597 Query: 234 DLTGVTDVLWKRFFQREFGE---------ADMNVAIKRMKESGVRYKWKKLFEAKTEKQK 386 L TD LWK R+F E +M + ++ +E +R + A K K Sbjct: 598 -LIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQDAREQRLRLLTNNIRSAHANKPK 656 Query: 387 QVEQRMS 407 + +M+ Sbjct: 657 GRQAKMA 663
>ELOA1_MOUSE (Q8CB77) Transcription elongation factor B polypeptide 3 (RNA| polymerase II transcription factor SIII subunit A) (SIII p110) (Elongin A) (EloA) (Elongin 110 kDa subunit) Length = 773 Score = 45.1 bits (105), Expect = 1e-04 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%) Frame = +3 Query: 54 GKKMEPERKPLSLLELCVRSAVDNLRYMNSVDNLEMGLLKRILPHCTLEQLTHIESCTQM 233 G K K ++L + C+R +N+ + V + +L+ +L CT +QL IE C + Sbjct: 538 GSKCAYLPKMMTLHQQCIRVLKNNIDSIFEVGGVPYSVLEPVLERCTPDQLYRIEECNHV 597 Query: 234 DLTGVTDVLWKRFFQREFGE---------ADMNVAIKRMKESGVRYKWKKLFEAKTEKQK 386 L TD LWK R+F E +M + ++ +E +R + A K K Sbjct: 598 -LIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQDAREQRLRLLTNNIRSAHANKPK 656 Query: 387 QVEQRMS 407 + +M+ Sbjct: 657 GRQAKMA 663
>ELOA1_HUMAN (Q14241) Transcription elongation factor B polypeptide 3 (RNA| polymerase II transcription factor SIII subunit A1) (SIII p110) (Elongin A) (EloA) (Elongin 110 kDa subunit) Length = 772 Score = 41.6 bits (96), Expect = 0.002 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%) Frame = +3 Query: 54 GKKMEPERKPLSLLELCVRSAVDNLRYMNSVDNLEMGLLKRILPHCTLEQLTHIESCTQM 233 G K K ++L + C+R +N+ + V + +L+ +L CT +QL IE + Sbjct: 539 GSKCAYLPKMMTLHQQCIRVLKNNIDSIFEVGGVPYSVLEPVLERCTPDQLYRIEEYNHV 598 Query: 234 DLTGVTDVLWKRFFQREFGE---------ADMNVAIKRMKESGVRYKWKKLFEAKTEKQK 386 L TD LWK R+F E +M + ++ +E +R K + A K K Sbjct: 599 -LIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQDAREQRLRVLTKNIQFAHANKPK 657 Query: 387 QVEQRMS 407 + +M+ Sbjct: 658 GRQAKMA 664
>ELOA1_CAEEL (Q09413) Transcription elongation factor B polypeptide 3 (RNA| polymerase II transcription factor SIII subunit A) (Elongin A) Length = 434 Score = 39.3 bits (90), Expect = 0.007 Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Frame = +3 Query: 87 SLLELCVRSAVDNLRYMNSVDNLEMGLLKRILPHCTLEQLTHIESCTQMDLTGVTDVLWK 266 +L+ LC + ++ ++ V + LLK +L H + +QL HI M L D ++ Sbjct: 221 TLVSLCQTVLMSHIDMIDHVGIVPFDLLKPVLDHASTDQLRHILDVNPM-LVEDADEMFH 279 Query: 267 RFFQREFGEADMNVAIKRMKESGVRYKWKKLFEAKTEKQKQVEQRMSAGLRNKYEAANAA 446 REF + ++SG + W+++++ EK+++ E L ++ +N+A Sbjct: 280 EMVSREFPK------YANREKSG--WTWREMYDRLVEKKQKKENDKLEMLTSRIGKSNSA 331 Query: 447 K-QSKQIKV 470 + Q +Q V Sbjct: 332 QSQGRQTMV 340
>YNX0_YEAST (P53861) Hypothetical 44.0 kDa protein in CSL4-URE2 intergenic| region Length = 379 Score = 35.4 bits (80), Expect = 0.11 Identities = 24/67 (35%), Positives = 33/67 (49%) Frame = +3 Query: 87 SLLELCVRSAVDNLRYMNSVDNLEMGLLKRILPHCTLEQLTHIESCTQMDLTGVTDVLWK 266 SL LC S + N + SV N+ LLKRIL + QL +E + L D LW Sbjct: 3 SLQTLCEISLMRNHSNIQSVSNVPYHLLKRILQKVKIPQLLKLEKSNVL-LIFDDDELWL 61 Query: 267 RFFQREF 287 F +++F Sbjct: 62 EFLRQDF 68
>RPOC_THET8 (Q8RQE8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 33.5 bits (75), Expect = 0.41 Identities = 20/45 (44%), Positives = 23/45 (51%) Frame = +2 Query: 137 EQRGQLGDGPAQENPAPLHLGAADPHRELYADGPYRRHRCAVEEV 271 E R + DG E PL GA DPH+ L A GP R VEE+ Sbjct: 1308 EARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEI 1352
>RPOC_THET2 (Q72HM6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1513 Score = 32.7 bits (73), Expect = 0.70 Identities = 18/38 (47%), Positives = 20/38 (52%) Frame = +2 Query: 158 DGPAQENPAPLHLGAADPHRELYADGPYRRHRCAVEEV 271 DG E PL GA DPH+ L A GP R VEE+ Sbjct: 1304 DGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEI 1341
>RPOC_THEAQ (Q9KWU6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = +2 Query: 158 DGPAQENPAPLHLGAADPHRELYADGPYRRHRCAVEEV 271 DG E PL GA DPH+ L A GP R V+E+ Sbjct: 1315 DGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEI 1352
>ACES_RABIT (Q29499) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| (Fragment) Length = 584 Score = 31.6 bits (70), Expect = 1.6 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +1 Query: 172 RESCPTAPWSS*PTSRAVRRWTLPASPMCCGRGSSSGNSVRLI*TLPSR 318 + P PW++ A RR TL A + C G + GN L+ L +R Sbjct: 229 QSGAPNGPWATVGVGEARRRATLLARLVVCPPGGAGGNDTELVACLRTR 277
>HAIR_HUMAN (O43593) Protein hairless| Length = 1189 Score = 31.2 bits (69), Expect = 2.0 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +2 Query: 122 QPQVHEQRGQLGDGPAQENPAPLHLGAAD 208 +P +H++ G++G G Q+NP PL LG D Sbjct: 245 RPSLHQRDGEMGAG-RQQNPCPLFLGQPD 272
>PRP5_GIBZE (Q4IP34) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 1227 Score = 31.2 bits (69), Expect = 2.0 Identities = 20/80 (25%), Positives = 39/80 (48%) Frame = +3 Query: 225 TQMDLTGVTDVLWKRFFQREFGEADMNVAIKRMKESGVRYKWKKLFEAKTEKQKQVEQRM 404 T +D + D L + + E G+AD++ +R+ + WKK E+ ++KQK+V Sbjct: 197 TLLDFECIADGLQAQTPKAEGGQADVDKKAERLAKLEA---WKKKKESASQKQKEVNPSQ 253 Query: 405 SAGLRNKYEAANAAKQSKQI 464 + L + + + SK + Sbjct: 254 TRNLLAEMDKKASGASSKTV 273
>ACES_RAT (P37136) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 614 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +1 Query: 184 PTAPWSS*PTSRAVRRWTLPASPMCCGRGSSSGNSVRLI*TLPSR 318 P PW++ A RR TL A + C G + GN LI L +R Sbjct: 263 PNGPWATVSAGEARRRATLLARLVGCPPGGAGGNDTELISCLRTR 307
>ACES_MOUSE (P21836) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 614 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +1 Query: 184 PTAPWSS*PTSRAVRRWTLPASPMCCGRGSSSGNSVRLI*TLPSR 318 P PW++ A RR TL A + C G + GN LI L +R Sbjct: 263 PNGPWATVSAGEARRRATLLARLVGCPPGGAGGNDTELIACLRTR 307
>INVO_RAT (P48998) Involucrin| Length = 568 Score = 31.2 bits (69), Expect = 2.0 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 9/159 (5%) Frame = +2 Query: 101 MCPERRRQPQVHEQRGQLGDGPAQENPAP-LHLGAADPHRELYADGPY---RRHRCAVEE 268 +C +++Q + HE+ LG QE+ P LHLG H+E + + ++H+ + E Sbjct: 242 LCLRKQQQQESHERELHLGKQQQQESHEPELHLG-KQQHQESHEPELHLGKQQHQESCEP 300 Query: 269 VLPAGIR*G*YERCHQENEGERSALQVEETL*GKNRKAKAS*TKNVCGTQKQI*SSKCRE 448 L G E+ HQE + + + + E L GK + + ++ G Q+ K E Sbjct: 301 ELHLG------EQQHQEQQQHQESCEPELHL-GKQQHQETQESELQLGKQQ-----KPHE 348 Query: 449 TEQTN*SLYEDPTEQQK-----KFLGRKWIQQPIQLQLQ 550 + + DP E+QK LG++ Q+ + +LQ Sbjct: 349 PD-----MVLDPKEKQKLHDPELHLGKQQHQESQESELQ 382
>ACES_FELCA (O62763) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 611 Score = 30.8 bits (68), Expect = 2.7 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +1 Query: 172 RESCPTAPWSS*PTSRAVRRWTLPASPMCCGRGSSSGNSVRLI*TLPSR 318 + P PW++ A RR TL A + C G + GN L+ L +R Sbjct: 256 QSGAPNGPWATVGVGEARRRATLLARLVGCPPGGAGGNDTELVACLRTR 304
>ACES_BOVIN (P23795) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 613 Score = 30.8 bits (68), Expect = 2.7 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +1 Query: 172 RESCPTAPWSS*PTSRAVRRWTLPASPMCCGRGSSSGNSVRLI*TLPSR 318 + P PW++ A RR TL A + C G + GN L+ L +R Sbjct: 258 QSGAPNGPWATVGVGEARRRATLLARLVGCPPGGAGGNDTELVACLRAR 306
>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2813 Score = 30.8 bits (68), Expect = 2.7 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Frame = -1 Query: 331 LSFILLMATFISASPNSRWKNLFHSTSVTPVRSICVQLSMWVSCSKVQWGRILLSRPISK 152 L+F ++ F + + + +L H++SV V+SI +S W C KV ++ + I Sbjct: 279 LAFAIINTVFTTTNAD----DLAHASSV--VQSILPLMSYWWRCEKVSQDEVIRALRIEI 332 Query: 151 LSTLF-MYLRLSTALRTHSSSKLRGFL 74 ++F M+L + + S K+R L Sbjct: 333 SRSIFLMHLHIENLVINSSDEKIRSDL 359
>LNT_SHEON (Q8EHP1) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP| N-acyltransferase) Length = 518 Score = 30.8 bits (68), Expect = 2.7 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 27/116 (23%) Frame = -1 Query: 340 RTPLSFILLMATFISASPNSRW--------KNLFHSTSVTPVRSICVQLSM--------- 212 R L+FIL +T +S +P S W L+ S S+ P S LS Sbjct: 19 RLVLAFILGASTALSFAPYSLWIIYPIAMSLALWQSESLNPKASFFHWLSFGFGCFAVGI 78 Query: 211 -WVSCSKVQWGRILLSRPISKLSTLFMYLRLSTAL---------RTHSSSKLRGFL 74 WV S +G + L ++ ++ L +YL L AL RT+S S R L Sbjct: 79 SWVHVSMDTFGGLPLPASVALMALLALYLALYPALTGLGLAWFTRTNSHSLWRNLL 134
>TIM_DROVI (O17482) Protein timeless| Length = 1343 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/69 (27%), Positives = 29/69 (42%) Frame = +2 Query: 32 LAAVYPGRKKDGA*KEASELAGAMCPERRRQPQVHEQRGQLGDGPAQENPAPLHLGAADP 211 ++AV G+K A + + G CP++R P + G G ENP + + D Sbjct: 427 ISAVKLGQKSPHA-GQLQLIKGKCCPQKRECPSSQSEHSDCGYGTQMENPESISTSSNDD 485 Query: 212 HRELYADGP 238 DGP Sbjct: 486 ------DGP 488
>PAM_STRPY (P49054) Plasminogen-binding group A steptococcal M-like protein| PAM precursor (Fragment) Length = 388 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/51 (27%), Positives = 27/51 (52%) Frame = +3 Query: 300 MNVAIKRMKESGVRYKWKKLFEAKTEKQKQVEQRMSAGLRNKYEAANAAKQ 452 +N A++ + E K K+ + K +++KQ+ GLR +A+ AK+ Sbjct: 138 LNGALRYINEKEAEAKEKEAEQKKLKEEKQISDASRQGLRRDLDASREAKK 188
>MCH_METAL (Q9RPW4) N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase| (EC 3.5.4.27) (Methenyl-H4MPT cyclohydrolase) (Fragment) Length = 132 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +2 Query: 134 HEQRGQLGDGPAQENPAPLHLGAADPHRELYADGPYR 244 HE+ LG GPA+ A + G +P ELY + YR Sbjct: 4 HEKYYALGSGPARAMAAKIKDGNEEPVEELYKELGYR 40
>WRIP1_HUMAN (Q96S55) ATPase WRNIP1 (Werner helicase-interacting protein 1)| Length = 665 Score = 29.3 bits (64), Expect = 7.8 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Frame = +2 Query: 47 PGRKKDGA*KEASELAGAMCPERRRQPQVHEQRGQLGDG--------PAQENPAPLHLGA 202 PGRK G A+ AG+ P + + E+ +GDG +++P A Sbjct: 134 PGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADA 193 Query: 203 ADPHRELYADGPYRRH--RCAVEEV 271 A+ A G R H A EE+ Sbjct: 194 AEAATAFGASGGGRPHPRALAAEEI 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,404,355 Number of Sequences: 219361 Number of extensions: 1315665 Number of successful extensions: 4556 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4394 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4551 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
