ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16f04 |
|---|---|
| Clone Library Name | barley_pub |
>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16| (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH box protein 38) Length = 1227 Score = 187 bits (476), Expect = 1e-47 Identities = 95/187 (50%), Positives = 133/187 (71%) Frame = +3 Query: 27 TXQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVYTKQAEPVMPLKDPTS 206 T ++L SG V EV +F++++ KV L+VH+ PPFLDGR+V+TKQ EPV+P+KD TS Sbjct: 379 TNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATS 438 Query: 207 DMAIIARKGSVLVREIREKQSQNKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVGDQ 386 D+AIIARKGS VR+ RE++ + K++ + WELAG+ LG+I+GV+K E D AV D Sbjct: 439 DLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMGVKKEEE---PDKAVTED- 494 Query: 387 GEIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQXXXXXXXXXXX 566 G++D++ E KF+ H+K K+EA S+FAK KS+ +QRQYLPI+ V+ +LL Sbjct: 495 GKVDYRTEQKFADHMKRKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVV 554 Query: 567 GETGSGK 587 GETGSGK Sbjct: 555 GETGSGK 561
>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-1 (EC 3.6.1.-) (Sex determination protein mog-1) (Masculinization of germ line protein 1) Length = 1131 Score = 157 bits (398), Expect = 2e-38 Identities = 84/187 (44%), Positives = 123/187 (65%), Gaps = 2/187 (1%) Frame = +3 Query: 33 QLLRSGAVR-GTEVQTEFDDE-DERKVILLVHDTKPPFLDGRVVYTKQAEPVMPLKDPTS 206 +L RSG V E+ + F+DE DE +V +LV + PPFLDGR+V+TKQA+P++P+ D T Sbjct: 289 RLHRSGVVAMADELSSIFEDETDENRVTILVQNIVPPFLDGRIVFTKQAQPIIPVVDTTC 348 Query: 207 DMAIIARKGSVLVREIREKQSQNKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVGDQ 386 DMA+ A +GSV VR+ RE + + K++ + WELAGS LGN++GV++ + +TA D Sbjct: 349 DMAVSAARGSVAVRKRREVEDRKKAQDKHWELAGSKLGNLMGVKEKKD----ETADPEDD 404 Query: 387 GEIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQXXXXXXXXXXX 566 ++KE +F+ H+K+ EAVSDFA KS+ QQR+YLP++ R ++ Sbjct: 405 DSGNYKESHQFASHMKDN-EAVSDFAMEKSIKQQREYLPVFACRQKMMNVIRENNVVIIV 463 Query: 567 GETGSGK 587 GETGSGK Sbjct: 464 GETGSGK 470
>PRP16_SCHPO (Q9P774) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16| (EC 3.6.1.-) Length = 1173 Score = 105 bits (263), Expect = 7e-23 Identities = 64/185 (34%), Positives = 104/185 (56%) Frame = +3 Query: 33 QLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVYTKQAEPVMPLKDPTSDM 212 +++ SG + +++++ +ER+V LLV + +P FLDG +K+ + ++DP SD+ Sbjct: 348 RMITSGVSKAPGLESDYSLMEERRVHLLVDELRPHFLDGAEFSSKKVGDITSVRDPQSDL 407 Query: 213 AIIARKGSVLVREIREKQSQNKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVGDQGE 392 AI AR GS LVRE RE + + K+ LAG++LGN++G++ + ++ DA G Sbjct: 408 AINARLGSRLVRERREFRERQKAASAATSLAGTSLGNVMGLKDSNDE-DAKA------GT 460 Query: 393 IDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGE 572 K + Q K+ E FA++KS +QR++LP + VR+ LL GE Sbjct: 461 TPVKVAGRSEQSNKKDTE----FARTKSYREQREFLPAFAVREQLLSVIRDNQVLIVVGE 516 Query: 573 TGSGK 587 TGSGK Sbjct: 517 TGSGK 521
>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase C10F6.02c (EC 3.6.1.-) Length = 1168 Score = 60.1 bits (144), Expect = 5e-09 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 14/199 (7%) Frame = +3 Query: 33 QLLRSGAVRGTEVQ-----------TEFDDEDERKVILLVHDTKPPFLDGRVVYTKQAEP 179 QL SGA+ T++ E + ED+ V + + + +P FL G+ + + P Sbjct: 344 QLAASGAISATDIPELNDGFNTNNAAEINPEDDEDVEIELREEEPGFLAGQTKVSLKLSP 403 Query: 180 VMPLKDPTSDMAIIARKGSVLV---REIREKQSQNKSRQRFWELAGSNLGNILGVEKTTE 350 + +K P ++ A +G +L REIR+K+++ KS Q E+ +L + Sbjct: 404 IKVVKAPDGSLSRAAMQGQILANDRREIRQKEAKLKSEQ---EMEKQDLSLSWQDTMSNP 460 Query: 351 QVDADTAVVGDQGEIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLL 530 Q V D E + A + S+ +QR+ LP++ +R L Sbjct: 461 QDRKFAQDVRDSAARQLTSETPSWRQATRNANISYGKRTTLSMKEQREGLPVFKLRKQFL 520 Query: 531 QXXXXXXXXXXXGETGSGK 587 + GETGSGK Sbjct: 521 EAVSKNQILVLLGETGSGK 539
>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box| protein 8) (RNA helicase HRH1) Length = 1220 Score = 53.5 bits (127), Expect = 4e-07 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 5/180 (2%) Frame = +3 Query: 63 TEVQTEFDDEDERKVILLVHDTKPPFLDGRVVYTKQAEPVMPLKDPTSDMAIIARKGSVL 242 T + + DDE++ + + + + +PPFL G + P+ +K+P ++ A S L Sbjct: 423 TGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSAL 482 Query: 243 VREIREKQSQNKSRQRFWELAGSNLG-NILGVEKTTE----QVDADTAVVGDQGEIDFKE 407 +E RE K QR E+ +G N V+ + Q+ A+ +G + Sbjct: 483 AKERREL----KQAQREAEMDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMPN----D 534 Query: 408 EAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 ++ +H +A S+ +QR+ LPIY +++ L+Q GETGSGK Sbjct: 535 IPEWKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGK 594
>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase (EC 3.6.1.-) Length = 1168 Score = 53.1 bits (126), Expect = 6e-07 Identities = 51/203 (25%), Positives = 81/203 (39%), Gaps = 18/203 (8%) Frame = +3 Query: 33 QLLRSGAVRGTEVQTEFDDED---------ERKVILLVHDTKPPFLDGRVVYTKQAEPVM 185 QL+ SG +R E +D D E ++ + +++ +P FL G+ Y+ PV Sbjct: 355 QLIASGVLRVDEFPMYDEDGDGMLYQEEGAEEELEIEMNEDEPAFLQGQTRYSVDMSPVK 414 Query: 186 PLKDPTSDMAIIARKGSVLVREIREKQSQN---------KSRQRFWELAGSNLGNILGVE 338 K+P ++ A S L +E RE + Q K R WE G + Sbjct: 415 IFKNPEGSLSRAAALQSALTKERREMREQQQRTMLDSIPKDLNRPWEDPMPETGE-RHLA 473 Query: 339 KTTEQVDADTAVVGDQGEIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVR 518 + V + + + F + F Q K S+ +QR+ LPIY ++ Sbjct: 474 QELRGVGLSAYDMPEWKKDAFGKTPTFGQRSK------------LSIQEQRESLPIYKLK 521 Query: 519 DDLLQXXXXXXXXXXXGETGSGK 587 +L+Q GETGSGK Sbjct: 522 KELIQAVHDNQVLVVIGETGSGK 544
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 50.1 bits (118), Expect = 5e-06 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%) Frame = +3 Query: 69 VQTEFDDEDERK--VILLVHDTKPPFLDGRVVYTKQAEPVMPLKDPTSDMAIIARKGSVL 242 V +DDE + + I LV D +P FL G + EPV +K+P +A A L Sbjct: 396 VLRNYDDESDGEDIEIELVED-EPDFLRGYGKGGAEIEPVKVVKNPDGSLAQAALMQGAL 454 Query: 243 VREIREKQSQ-NKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVGDQGEIDFKEEAKF 419 +E +E + Q + R + S+ IL + Q A +A KE ++ Sbjct: 455 SKERKETKIQAQRERDMDTQKGFSSNARILD-PMSGNQSTAWSADESKDRNNKMKEMPEW 513 Query: 420 SQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 +H+ +A + S+ +QR+ LPI+ ++ +L++ GETGSGK Sbjct: 514 LKHVTAGGKATYGRRTNLSMVEQRESLPIFALKKNLMEAMIDNQILVVVGETGSGK 569
>CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (EC 3.6.1.-)| Length = 1055 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/72 (33%), Positives = 34/72 (47%) Frame = +3 Query: 372 VVGDQGEIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQXXXXXX 551 V + +IDF + K S + ++D KSL R+ LP+Y +DDLL+ Sbjct: 376 VFDESQQIDFLLDTKLSAENPVDTDKMTDVKVEKSLESSRKSLPVYQYKDDLLKAINEYQ 435 Query: 552 XXXXXGETGSGK 587 ETGSGK Sbjct: 436 VLLIVAETGSGK 447
>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22| (EC 3.6.1.-) Length = 1145 Score = 42.4 bits (98), Expect = 0.001 Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 4/179 (2%) Frame = +3 Query: 63 TEVQTEFDDEDERKVILLVHDTKPPFL-DGRVVYTKQAEPVMPLKDPTSDMAIIARKGSV 239 ++++ + DE + + L D P FL D +V K+ E K P M A GS Sbjct: 346 SKLEEQQRDETDEIDVELNTDDGPKFLKDQQVKGAKKYEMPKITKVPRGFMNRSAINGSN 405 Query: 240 LVREIREKQSQNKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVGDQGEIDF-KEEAK 416 +R+ RE++ + K + K D + EI K + Sbjct: 406 AIRDHREEKLRKKREIE------------QQIRKQQSFDDPTKNKKDSRNEIQMLKNQLI 453 Query: 417 FSQHLKEKAEAVSDFAKSKSL--SQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 ++ K + + K SL S QRQ LP+Y +R +L+Q GETGSGK Sbjct: 454 VTEWEKNRMNESISYGKRTSLPISAQRQTLPVYAMRSELIQAVRDNQFLVIVGETGSGK 512
>DHX16_PANTR (Q7YR39) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent RNA helicase #3) Length = 1044 Score = 39.7 bits (91), Expect = 0.007 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 2/114 (1%) Frame = +3 Query: 252 IREKQSQNKSRQRFWELAGSNLGNI-LGVEKTTEQVDADTAVVGDQGEIDFKEEAKFSQH 428 + E+ QR WE A ++ G Q V+ ++ I+F + + Sbjct: 318 VEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGN 377 Query: 429 LKEKAEAVSDFAKSK-SLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 + A S A+ K S+ R+ LP++ R++LL GETGSGK Sbjct: 378 EEPSAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGK 431
>PRP2_YEAST (P20095) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2| (EC 3.6.1.-) Length = 876 Score = 38.9 bits (89), Expect = 0.011 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Frame = +3 Query: 261 KQSQNKSRQRFWE-------LAGSNLG----NILGVEKTTEQVDADTAVVGDQGEIDFKE 407 K+ +RQR WE +AG + + G +K D D + E D Sbjct: 133 KEIDKINRQRMWEEQQLRNAMAGQSDHPDDITLEGSDKYDYVFDTDAMIDYTNEEDDLLP 192 Query: 408 EAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 E K + ++ + ++ + R+ LP++ +D+LLQ GETGSGK Sbjct: 193 EEKLQYEARLAQALETEEKRILTIQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGK 252
>DHX16_HUMAN (O60231) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent RNA helicase #3) Length = 1041 Score = 38.9 bits (89), Expect = 0.011 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 2/114 (1%) Frame = +3 Query: 252 IREKQSQNKSRQRFWELAGSNLGNI-LGVEKTTEQVDADTAVVGDQGEIDFKEEAKFSQH 428 + E+ QR WE A ++ G Q V+ ++ I+F + Sbjct: 315 VEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGD 374 Query: 429 LKEKAEAVSDFAKSK-SLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 + A S A+ K S+ R+ LP++ R++LL GETGSGK Sbjct: 375 EEPSAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGK 428
>PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16| (EC 3.6.1.-) Length = 1071 Score = 38.9 bits (89), Expect = 0.011 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 1/137 (0%) Frame = +3 Query: 180 VMPLKDPTSDMAIIARKGSVLVREIREKQSQNKSRQRFWELAGSNLGNILGVEKTTEQVD 359 V P ++P S+ + A++GS LV R + + + + +G +LG+E + D Sbjct: 264 VNPFRNPDSEFSANAKRGSKLVALRRINMEHIQQSRDNTTVLNTAMGEVLGLENNNKAKD 323 Query: 360 ADTAVVGDQGEIDFKEEAKFSQHLKEKAEAVSDFAKSKS-LSQQRQYLPIYTVRDDLLQX 536 + D + F SK + ++ LP++ R LL Sbjct: 324 KSNQKICDDTAL---------------------FTPSKDDIKHTKEQLPVFRCRSQLLSL 362 Query: 537 XXXXXXXXXXGETGSGK 587 GETGSGK Sbjct: 363 IRENQVVVIIGETGSGK 379
>DDX41_MOUSE (Q91VN6) Probable ATP-dependent RNA helicase DDX41 (EC 3.6.1.-)| (DEAD box protein 41) Length = 622 Score = 36.2 bits (82), Expect = 0.072 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +3 Query: 348 EQVDADTAVVGDQGEIDFKEEAKFS-----QHLKEKAEAVSDFAKSKSLSQQRQYL 500 EQ D+ + GD+ +I ++ S QHLKEKAEA + AK K L ++ + L Sbjct: 62 EQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKIL 117
>DDX41_HUMAN (Q9UJV9) Probable ATP-dependent RNA helicase DDX41 (EC 3.6.1.-)| (DEAD box protein 41) (DEAD box protein abstrakt homolog) Length = 622 Score = 36.2 bits (82), Expect = 0.072 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +3 Query: 348 EQVDADTAVVGDQGEIDFKEEAKFS-----QHLKEKAEAVSDFAKSKSLSQQRQYL 500 EQ D+ + GD+ +I ++ S QHLKEKAEA + AK K L ++ + L Sbjct: 62 EQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKIL 117
>DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-4 (EC 3.6.1.-) (Sex determination protein mog-4) (Masculinization of germ line protein 4) Length = 1008 Score = 34.7 bits (78), Expect = 0.21 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = +3 Query: 390 EIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXG 569 ++DF + + +E E ++ K S+ + R+ LP+Y RD ++ G Sbjct: 329 KVDFIQALQMPGTNEEVVETEAE-KKKMSIEETRKSLPVYAFRDAFIEAVKEHQVLIIEG 387 Query: 570 ETGSGK 587 ETGSGK Sbjct: 388 ETGSGK 393
>PRH1_SCHPO (Q03319) Probable ATP-dependent RNA helicase prh1 (EC 3.6.1.-)| Length = 719 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +3 Query: 462 AKSKSLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 +K K + +QR+ LPI+ D L Q GETGSGK Sbjct: 84 SKRKDILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGK 125
>DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (EC 3.6.1.-)| (Nuclear DNA helicase II) (NDH II) Length = 1301 Score = 33.5 bits (75), Expect = 0.47 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Frame = +3 Query: 381 DQGEIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQ---QRQYLPIYTVRDDLLQXXXXXX 551 D+ + F + SQ + EK DF + ++L + QR LP+ R++++Q Sbjct: 343 DEEPLAFMSMEQISQRIMEK----EDFKRGEALDKITAQRGELPVAQYRENIVQTVAENR 398 Query: 552 XXXXXGETGSGK 587 GETG GK Sbjct: 399 VTLIKGETGCGK 410
>DHX35_PONPY (Q5RBD4) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)| (DEAH box protein 35) Length = 720 Score = 32.7 bits (73), Expect = 0.80 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 474 SLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 S+ QQRQ LP++ +R+ +L GETG GK Sbjct: 46 SIEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGK 83
>DHX35_HUMAN (Q9H5Z1) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)| (DEAH box protein 35) Length = 703 Score = 32.7 bits (73), Expect = 0.80 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 474 SLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 S+ QQRQ LP++ +R+ +L GETG GK Sbjct: 46 SIEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGK 83
>PABB_BACSU (P28820) Para-aminobenzoate synthase component 1 (EC 6.3.5.8)| (Para-aminobenzoate synthase component I) (ADC synthase) Length = 470 Score = 32.0 bits (71), Expect = 1.4 Identities = 22/80 (27%), Positives = 40/80 (50%) Frame = +3 Query: 12 MLSGRTXQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVYTKQAEPVMPL 191 +L + +LL + + GT + + ++EDE L+H+ K ++AE VM + Sbjct: 268 LLVSKKGKLLETRPIAGTRSRGKTNEEDEALANELIHNEK-----------ERAEHVMLV 316 Query: 192 KDPTSDMAIIARKGSVLVRE 251 +D+ ++R GSV V E Sbjct: 317 DLERNDLGRVSRYGSVRVNE 336
>CADN2_DROME (Q9VJB6) Putative neural-cadherin 2 precursor (Cadherin-N2 protein)| (DN2-cadherin) Length = 2215 Score = 31.6 bits (70), Expect = 1.8 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 12/105 (11%) Frame = +3 Query: 69 VQTEFDDEDERKVILLVHDTKPPFLDGRVVYT------------KQAEPVMPLKDPTSDM 212 + ++F D +E + +H KP D R ++T KQ E + L+ + Sbjct: 98 LDSDFSDSEECRPKSEIHVAKPETEDNRDLFTYQQLKLMCCEMMKQCEDRVVLEYEIALT 157 Query: 213 AIIARKGSVLVREIREKQSQNKSRQRFWELAGSNLGNILGVEKTT 347 +A + ++ Q Q +S +++ G N+GN V+ TT Sbjct: 158 QKMAEQYDTFIK-FNHDQLQRESTNIRYQITGGNIGNAFAVQNTT 201
>DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase prp43 (EC 3.6.1.-) Length = 735 Score = 31.2 bits (69), Expect = 2.3 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 17/81 (20%) Frame = +3 Query: 396 DFKEEAKFSQHLKEKAEAVSDFAKSKS-----------------LSQQRQYLPIYTVRDD 524 D EE S+ L +A V+ AK++ + + R+ LP+Y R++ Sbjct: 24 DDSEEVVSSKGLTRRATTVAQAAKAEEGPNNFFNDKPFSQNYFKILETRRELPVYQQREE 83 Query: 525 LLQXXXXXXXXXXXGETGSGK 587 L+ GETGSGK Sbjct: 84 FLKIYHENQIIVFVGETGSGK 104
>DNAA_THET8 (Q9X9D5) Chromosomal replication initiator protein dnaA| Length = 436 Score = 31.2 bits (69), Expect = 2.3 Identities = 35/136 (25%), Positives = 54/136 (39%) Frame = +3 Query: 114 LVHDTKPPFLDGRVVYTKQAEPVMPLKDPTSDMAIIARKGSVLVREIREKQSQNKSRQRF 293 L+ D +PP L+ R+ K L+ P + IAR+ + IRE + F Sbjct: 260 LITDIQPPDLETRIAILKMNAEQRGLRIPEDALEYIARQ---VTSNIRELEGALMRAIAF 316 Query: 294 WELAGSNLGNILGVEKTTEQVDADTAVVGDQGEIDFKEEAKFSQHLKEKAEAVSDFAKSK 473 L G L + K + A + D EI K + H K E ++ + K Sbjct: 317 ASLNGVELTRAVAA-KALSDIFAPRELEADPLEI----IRKVADHFGLKPEELTGSGRKK 371 Query: 474 SLSQQRQYLPIYTVRD 521 + RQ L +Y VR+ Sbjct: 372 EVVLPRQ-LAMYLVRE 386
>DNAA_THET2 (Q72H87) Chromosomal replication initiator protein dnaA| Length = 436 Score = 31.2 bits (69), Expect = 2.3 Identities = 35/136 (25%), Positives = 54/136 (39%) Frame = +3 Query: 114 LVHDTKPPFLDGRVVYTKQAEPVMPLKDPTSDMAIIARKGSVLVREIREKQSQNKSRQRF 293 L+ D +PP L+ R+ K L+ P + IAR+ + IRE + F Sbjct: 260 LITDIQPPDLETRIAILKMNAEQRGLRIPEDALEYIARQ---VTSNIRELEGALMRAIAF 316 Query: 294 WELAGSNLGNILGVEKTTEQVDADTAVVGDQGEIDFKEEAKFSQHLKEKAEAVSDFAKSK 473 L G L + K + A + D EI K + H K E ++ + K Sbjct: 317 ASLNGVELTRAVAA-KALSDIFAPRELEADPLEI----IRKVADHFGLKPEELTGSGRKK 371 Query: 474 SLSQQRQYLPIYTVRD 521 + RQ L +Y VR+ Sbjct: 372 EVVLPRQ-LAMYLVRE 386
>UGA4_YEAST (P32837) GABA-specific permease (GABA-specific transport protein)| Length = 571 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -1 Query: 203 CWILQWHYRLCLLCVYNSPIQERRFRIMNKKYYFTLILII 84 CWIL W +CL+ N I +++ KY F L II Sbjct: 321 CWILGWLIIICLMACINPDIDS----VLDSKYGFALAQII 356
>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 698 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 471 KSLSQQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 ++L QR+ LPI+ R LL GETGSGK Sbjct: 56 EALELQRRSLPIFRARGQLLAQLRNLDNAVLIGETGSGK 94
>SYW_MYCLE (Q49901) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 343 Score = 30.8 bits (68), Expect = 3.0 Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 18/142 (12%) Frame = +3 Query: 90 EDERKVILLVHDT----KPPFLDGRVV----YTKQAEPVMPLKDPTSDMAIIARKGSVL- 242 ED+R+ + L D F D VV K A + L DPTS M+ A + L Sbjct: 158 EDQRQHLELARDLAQRFNSRFPDTFVVPDMFIPKMAAKIYDLADPTSKMSKSASSDAGLI 217 Query: 243 ---------VREIREKQSQNKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVGDQGEI 395 V++IR + ++ R+ + N+L ++ VD DT V G Sbjct: 218 NLLDDPALSVKKIRAAVTDSEREIRYDPEVKPGVSNLLNIQSAVTGVDVDTLVQRYVGH- 276 Query: 396 DFKEEAKFSQHLKEKAEAVSDF 461 + K+ AEAV +F Sbjct: 277 ------GYGDLKKDTAEAVVEF 292
>K0831_HUMAN (Q6ZNE5) Protein KIAA0831| Length = 492 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/54 (27%), Positives = 30/54 (55%) Frame = -1 Query: 458 ITDSFCFFLQVLRKLRFLLEINLPLITNNSSICIDLFSRFLNTQYISKIRSSKL 297 I+ + C+ Q++ L +L++NLP NS C + S+ T+ + K+ ++ L Sbjct: 303 ISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNANIL 356
>IFT74_HUMAN (Q96LB3) Intraflagellar transport 74 homolog (Coiled-coil| domain-containing protein 2) (Capillary morphogenesis protein 1) (CMG-1) Length = 600 Score = 30.0 bits (66), Expect = 5.2 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Frame = +3 Query: 225 RKGSVLVREIREKQSQNKSRQRFWELAGSNLG--------NILGVEKTTEQVDADTAVVG 380 ++ L EI+E Q Q + +N N+L + E D V+ Sbjct: 134 KRAETLAVEIKELQGQLADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRETQSLD--VIF 191 Query: 381 DQGEIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQ 533 + + K+ + ++++ +A D K+ S Q +YL + T + LLQ Sbjct: 192 TERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQ 242
>DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase (EC 3.6.1.-) Length = 729 Score = 30.0 bits (66), Expect = 5.2 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 483 QQRQYLPIYTVRDDLLQXXXXXXXXXXXGETGSGK 587 ++R+ LP++ +DD L GETGSGK Sbjct: 60 EKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGK 94
>HIS5_HALSA (Q9HNI6) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 218 Score = 30.0 bits (66), Expect = 5.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 315 LGNILGVEKTTEQVDADTAVVGDQGEID 398 LGN+ V + E+ AD ++VGD G +D Sbjct: 20 LGNLRSVTRGLERASADVSIVGDPGALD 47
>STAR9_HUMAN (Q9P2P6) StAR-related lipid transfer protein 9 (StARD9) (START| domain-containing protein 9) (Fragment) Length = 1820 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +3 Query: 342 TTEQVDADTAVVGDQGEIDFKEEAKFSQHLKEKAEAVSDFAKSKSLSQQRQ 494 T E + AD V E+ +++ +E+AE + +F +++SLS Q+Q Sbjct: 1355 TGEALAADEPVTSTWKELYARQKKAIETLRRERAERLGNFCRTRSLSPQKQ 1405
>NOTCH_DROME (P07207) Neurogenic locus Notch protein precursor| Length = 2703 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -1 Query: 326 YISKIRS-SKLPEALPRLVLALLFANFPNQNR 234 +I+K+ + + LP +LP L+L L FAN PN R Sbjct: 20 WINKMHAVASLPASLPLLLLTLAFANLPNTVR 51
>RPC_BPPHC (P08979) Repressor protein C| Length = 683 Score = 29.3 bits (64), Expect = 8.8 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 6/143 (4%) Frame = +3 Query: 39 LRSGAVRGTEVQTEFD---DEDERKVILLVHDTKPPFLDGRVVYTKQAEPVMPLKDPTSD 209 +R GAV G + DE+ R + + TK P + Y A P + + Sbjct: 203 VRIGAVPGADAIHALRNAVDENGRNLPMCRTRTKNP-----IQYWGPAAEQKPELELCAG 257 Query: 210 MAIIARKGSVLVREIREKQ---SQNKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVG 380 + + G V V E + S S++ + + G + G + + T+ VDA + V Sbjct: 258 CSKVVPTGEVSVSEESVEVPGLSMTVSQKSYTPVEGDDKGENMAAKNDTQDVDAQISAV- 316 Query: 381 DQGEIDFKEEAKFSQHLKEKAEA 449 G +D + A+ + +KE AEA Sbjct: 317 -HGHVDNIKTAETVEAVKEAAEA 338
>COBS_SULSO (Q97TZ6) Cobalamin synthase (EC 2.-.-.-)| Length = 253 Score = 29.3 bits (64), Expect = 8.8 Identities = 19/72 (26%), Positives = 36/72 (50%) Frame = +1 Query: 325 YWVLRKRLNRSMQILLLLVIKGRLISRRKRSFRNT*RKKQKLSVILQNLNLFLSKDNIFL 504 Y + L+ S+ + +L I S R F + + K K +++L L F+S N+ + Sbjct: 137 YLISSNVLSMSLSLYILSTISPIPESNLGRIFHD--KLKGKSTILLLELIPFISLYNVIV 194 Query: 505 YILSEMTCYRLC 540 +I+ M Y++C Sbjct: 195 FIIFYMIMYKIC 206
>DFA1_ANASP (Q8YNW5) Putative diflavin flavoprotein A 1 (EC 1.-.-.-)| Length = 576 Score = 29.3 bits (64), Expect = 8.8 Identities = 14/61 (22%), Positives = 35/61 (57%) Frame = +3 Query: 174 EPVMPLKDPTSDMAIIARKGSVLVREIREKQSQNKSRQRFWELAGSNLGNILGVEKTTEQ 353 EPV PL++ ++ ++ +L+ K++ ++ ++ E AG+++G L ++T +Q Sbjct: 361 EPVFPLRNKFQELGLVEAFPPILI-----KEAPAQTTEQLCEEAGTDIGQWLTRDRTIKQ 415 Query: 354 V 356 + Sbjct: 416 I 416
>CLPB_LACLC (O68185) Chaperone clpB| Length = 867 Score = 29.3 bits (64), Expect = 8.8 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Frame = +3 Query: 243 VREIREKQSQNKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVGDQGEIDFKEEAKFS 422 + E+RE+ +Q K++ WE +GNI E + ++G ++ ++ Sbjct: 450 IAELREENNQLKAQ---WEAEKKEVGNISEKRNELEHARHELEEAQNEGNLEKAAALRYG 506 Query: 423 Q--HLKEKAEAVSDFAKSKSLS 482 + ++++ +A+ + AKS LS Sbjct: 507 KIPEIEKELKAIEEKAKSDDLS 528
>CLPB_LACLA (Q9CFF3) Chaperone clpB| Length = 867 Score = 29.3 bits (64), Expect = 8.8 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Frame = +3 Query: 243 VREIREKQSQNKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVGDQGEIDFKEEAKFS 422 + E+RE+ +Q K++ WE +GNI E + ++G ++ ++ Sbjct: 450 IAELREENNQLKAQ---WEAEKKEVGNISEKRNELEHARHELEEAQNEGNLEKAAALRYG 506 Query: 423 Q--HLKEKAEAVSDFAKSKSLS 482 + ++++ +A+ + AKS LS Sbjct: 507 KIPEIEKELKAIEEKAKSDDLS 528
>TIM50_YEAST (Q02776) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 29.3 bits (64), Expect = 8.8 Identities = 27/120 (22%), Positives = 57/120 (47%) Frame = +3 Query: 81 FDDEDERKVILLVHDTKPPFLDGRVVYTKQAEPVMPLKDPTSDMAIIARKGSVLVREIRE 260 ++ E + K++ L+ PFL+ + T+Q + V P+ + D +A + V+++++ Sbjct: 312 WNGEADDKLVRLI-----PFLE--YLATQQTKDVRPILNSFEDKKNLAEEFDHRVKKLKD 364 Query: 261 KQSQNKSRQRFWELAGSNLGNILGVEKTTEQVDADTAVVGDQGEIDFKEEAKFSQHLKEK 440 K + W + LGN LG T +D ++ ++G+ ++ K + KEK Sbjct: 365 KFYGDHKSGGNWAMTALGLGNSLG-GSTKFPLD----LIHEEGQKNYLMFMKMIEEEKEK 419
>NOP14_YEAST (Q99207) Nucleolar complex protein 14 (U3 small nucleolar| RNA-associated protein 2) (U3 snoRNA-associated protein 2) Length = 810 Score = 29.3 bits (64), Expect = 8.8 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 13/106 (12%) Frame = +3 Query: 216 IIARKGSVLVREIREKQSQNKSRQRFWELAG------------SNLGNILGVEKTTEQVD 359 ++ + +L R RE+QSQ+K + L ++LG L +E + Sbjct: 123 LLTEEEKMLERFTRERQSQSKRNANLFNLEDDEDDGDMFGDGLTHLGQSLSLEDELANDE 182 Query: 360 ADTAVVGDQGEIDFKEEAKFSQHLKEKAEAVSD-FAKSKSLSQQRQ 494 D E D E + Q K KAE + + AKSK Q+RQ Sbjct: 183 EDFLASKRFNEDD--AELQQPQRKKTKAEVMKEVIAKSKFYKQERQ 226 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,367,185 Number of Sequences: 219361 Number of extensions: 1491866 Number of successful extensions: 5039 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 4869 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5028 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
