ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd16e20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101263.1| Oryza sativa (japonica cultivar-group) cDNA clon... 583 e-163
2dbj|AK061141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 583 e-163
3gb|AY106338.1| Zea mays PCO074336 mRNA sequence 323 4e-85
4gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome... 276 7e-71
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 276 7e-71
6dbj|AK070900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
7gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.49
8gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.49
9emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete ch... 44 0.49
10emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.49
11gb|AC129803.3| Homo sapiens 3 BAC RP11-15N24 (Roswell Park Cance... 44 0.49
12gb|BC093085.1| Homo sapiens cDNA clone IMAGE:30530427 44 0.49
13dbj|AB091435.1| Burkholderia multivorans genes for probable lipo... 44 0.49
14emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris comp... 44 0.49
15gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.49
16gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.9
17gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.9
18gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.9
19emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.9
20gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, compl... 42 1.9
21gb|AF245690.1|AF245690 Streptomyces verticillus putative N-acety... 42 1.9
22dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.9
23dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 42 1.9
24gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.9
25dbj|AP000071.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 42 1.9
26ref|NM_119602.1| Arabidopsis thaliana ubiquitin-protein ligase/ ... 40 7.6
27ref|NM_111347.1| Arabidopsis thaliana unknown protein AT3G04750 ... 40 7.6
28gb|AY374476.1| Tetraodon nigroviridis class I helical cytokine r... 40 7.6
29ref|XM_465933.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
30gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7... 40 7.6
31gb|AY028643.1| Plasmodium falciparum erythrocyte membrane protei... 40 7.6
32gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome III BAC... 40 7.6
33gb|AC091173.10| Homo sapiens chromosome 8, clone RP11-280G9, com... 40 7.6
34emb|AL353732.14| Human DNA sequence from clone RP11-354P17 on ch... 40 7.6
35gb|AF188024.3| Homo sapiens chromosome 12 clone CTC-790L10 map 1... 40 7.6
36emb|AL021997.1|HS874C20 Human DNA sequence from clone RP5-874C20... 40 7.6
37gb|AY117264.1| Arabidopsis thaliana unknown protein (At4g34370) ... 40 7.6
38gb|AY050864.1| Arabidopsis thaliana unknown protein (At4g34370) ... 40 7.6
39emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, ... 40 7.6
40emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome 4, B... 40 7.6
41emb|CR937026.1|PT085P01 Pan troglodytes chromosome 11 BAC PTB-08... 40 7.6
42emb|CR628311.1| Human DNA sequence from clone XX-NCIH2171_5AD01,... 40 7.6
43emb|CR626894.1| Human DNA sequence from clone XX-NCIH2171_3M21, ... 40 7.6
44dbj|AK123280.1| Homo sapiens cDNA FLJ41286 fis, clone BRAMY2038475 40 7.6
45gb|AC067881.5| Homo sapiens chromosome 8, clone RP11-687K23, com... 40 7.6
46gb|AC022363.24| Homo sapiens 12 BAC RP11-1151B7 (Roswell Park Ca... 40 7.6
47gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 7.6
48dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
49dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
50dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
51emb|BX255890.6| Zebrafish DNA sequence from clone CH211-236L15, ... 40 7.6
52gb|AC097473.3| Homo sapiens BAC clone RP11-75N20 from 4, complet... 40 7.6
53gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7... 40 7.6
54gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.6
55dbj|AP005928.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
56dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
57gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
58emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.6
59emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.6
60emb|AJ510204.1|ATH510204 Arabidopsis thaliana ari1 gene for ARIA... 40 7.6 
>dbj|AK101263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032J06, full
           insert sequence
          Length = 1287

 Score =  583 bits (294), Expect = e-163
 Identities = 423/463 (91%), Gaps = 6/463 (1%)
 Strand = Plus / Plus

                                                                       
Query: 103 aggcgcctgcagtcccgctacgatctgtacatggggttcgacgacgcggacgccg---gc 159
           |||||||||||| | |||||||||||||||||||||||||||||||||||||| |   ||
Sbjct: 210 aggcgcctgcaggcgcgctacgatctgtacatggggttcgacgacgcggacgcggcgggc 269

                                                                       
Query: 160 ggggacgaggtggaggcgcgcgg-ggcgg--aggcctacaactgccccttttgcggcgag 216
           | ||| ||||||||||||||||| |||||  |||| |||||||||||||| |||||||||
Sbjct: 270 gtggaggaggtggaggcgcgcggcggcggggaggcgtacaactgccccttctgcggcgag 329

                                                                       
Query: 217 gatttcgatttcgtaggcctctgctgccacatcgacgacgagcacgccgtcgaggccaag 276
           || ||||| ||||| | | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 330 gacttcgacttcgtcgccttctgctgccacgtcgacgacgagcacgccgtcgaggccaag 389

                                                                       
Query: 277 agcgggatatgccccatctgtgctacgagggttggggtggacttgataggccacttgaca 336
           |||||| |||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 390 agcggggtatgtcccatctgtgctacaagggttggagtggacttgataggtcacttgaca 449

                                                                       
Query: 337 atgcagcatggaagttacttcaagatgcaacgcaggcgcagagtccgaaaagtatctcct 396
           |||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| | 
Sbjct: 450 atgcagcatggaagttactttaagatgcaacgcaggcgaagagtccgaaaaatatcttca 509

                                                                       
Query: 397 gggtcccattctttgctgtctttgttgagaaaggatttaagagacggcagtttgcagtcc 456
           ||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 510 gggtcccattctttgttgtctttgttgagaaaggacttaagagatggcagtctgcagtcc 569

                                                                       
Query: 457 tttcttggtggatcatcctatgtatctaatcctcccgccgcagcccctgatccatttttg 516
           ||||||||||||||||||||||||||||||||||| || || || || ||||||||||||
Sbjct: 570 tttcttggtggatcatcctatgtatctaatcctcctgctgctgcaccagatccatttttg 629

                                                      
Query: 517 tcatctttaatttgtagtttgcctgtggctgagccatcgaaag 559
           |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 630 tcatctttaatttgtagtttgcctgtggctgaaccatccaaag 672
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>dbj|AK061141.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C03, full
           insert sequence
          Length = 1248

 Score =  583 bits (294), Expect = e-163
 Identities = 423/463 (91%), Gaps = 6/463 (1%)
 Strand = Plus / Plus

                                                                       
Query: 103 aggcgcctgcagtcccgctacgatctgtacatggggttcgacgacgcggacgccg---gc 159
           |||||||||||| | |||||||||||||||||||||||||||||||||||||| |   ||
Sbjct: 141 aggcgcctgcaggcgcgctacgatctgtacatggggttcgacgacgcggacgcggcgggc 200

                                                                       
Query: 160 ggggacgaggtggaggcgcgcgg-ggcgg--aggcctacaactgccccttttgcggcgag 216
           | ||| ||||||||||||||||| |||||  |||| |||||||||||||| |||||||||
Sbjct: 201 gtggaggaggtggaggcgcgcggcggcggggaggcgtacaactgccccttctgcggcgag 260

                                                                       
Query: 217 gatttcgatttcgtaggcctctgctgccacatcgacgacgagcacgccgtcgaggccaag 276
           || ||||| ||||| | | ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gacttcgacttcgtcgccttctgctgccacgtcgacgacgagcacgccgtcgaggccaag 320

                                                                       
Query: 277 agcgggatatgccccatctgtgctacgagggttggggtggacttgataggccacttgaca 336
           |||||| |||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 321 agcggggtatgtcccatctgtgctacaagggttggagtggacttgataggtcacttgaca 380

                                                                       
Query: 337 atgcagcatggaagttacttcaagatgcaacgcaggcgcagagtccgaaaagtatctcct 396
           |||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| | 
Sbjct: 381 atgcagcatggaagttactttaagatgcaacgcaggcgaagagtccgaaaaatatcttca 440

                                                                       
Query: 397 gggtcccattctttgctgtctttgttgagaaaggatttaagagacggcagtttgcagtcc 456
           ||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 441 gggtcccattctttgttgtctttgttgagaaaggacttaagagatggcagtctgcagtcc 500

                                                                       
Query: 457 tttcttggtggatcatcctatgtatctaatcctcccgccgcagcccctgatccatttttg 516
           ||||||||||||||||||||||||||||||||||| || || || || ||||||||||||
Sbjct: 501 tttcttggtggatcatcctatgtatctaatcctcctgctgctgcaccagatccatttttg 560

                                                      
Query: 517 tcatctttaatttgtagtttgcctgtggctgagccatcgaaag 559
           |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 561 tcatctttaatttgtagtttgcctgtggctgaaccatccaaag 603
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>gb|AY106338.1| Zea mays PCO074336 mRNA sequence
          Length = 849

 Score =  323 bits (163), Expect = 4e-85
 Identities = 247/275 (89%)
 Strand = Plus / Plus

                                                                       
Query: 285 atgccccatctgtgctacgagggttggggtggacttgataggccacttgacaatgcagca 344
           |||||||||||||||||| ||||| ||  ||||||||||||| || ||||| ||||| ||
Sbjct: 61  atgccccatctgtgctacaagggtcggaatggacttgataggacatttgactatgcaaca 120

                                                                       
Query: 345 tggaagttacttcaagatgcaacgcaggcgcagagtccgaaaagtatctcctgggtccca 404
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 tggaagttatttcaagatgcaacgcaggcgcagagtccgaaaagtatcttctgggtccca 180

                                                                       
Query: 405 ttctttgctgtctttgttgagaaaggatttaagagacggcagtttgcagtcctttcttgg 464
           ||||||  | ||||||||||||||||| || ||| | |||||||||||||| ||||| ||
Sbjct: 181 ttctttattatctttgttgagaaaggacttgagaaatggcagtttgcagtcatttctcgg 240

                                                                       
Query: 465 tggatcatcctatgtatctaatcctcccgccgcagcccctgatccatttttgtcatcttt 524
           |||||||||||||||||| |||||||| || ||||| || ||||||||| ||||||||||
Sbjct: 241 tggatcatcctatgtatccaatcctcctgctgcagcaccagatccatttgtgtcatcttt 300

                                              
Query: 525 aatttgtagtttgcctgtggctgagccatcgaaag 559
           |||||||| ||||||||||||||| ||||| ||||
Sbjct: 301 aatttgtactttgcctgtggctgaaccatccaaag 335
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>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06,
             complete sequence
          Length = 143130

 Score =  276 bits (139), Expect = 7e-71
 Identities = 184/199 (92%)
 Strand = Plus / Minus

                                                                         
Query: 361   atgcaacgcaggcgcagagtccgaaaagtatctcctgggtcccattctttgctgtctttg 420
             |||||||||||||| |||||||||||| ||||| | ||||||||||||||| ||||||||
Sbjct: 67369 atgcaacgcaggcgaagagtccgaaaaatatcttcagggtcccattctttgttgtctttg 67310

                                                                         
Query: 421   ttgagaaaggatttaagagacggcagtttgcagtcctttcttggtggatcatcctatgta 480
             ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 67309 ttgagaaaggacttaagagatggcagtctgcagtcctttcttggtggatcatcctatgta 67250

                                                                         
Query: 481   tctaatcctcccgccgcagcccctgatccatttttgtcatctttaatttgtagtttgcct 540
             ||||||||||| || || || || ||||||||||||||||||||||||||||||||||||
Sbjct: 67249 tctaatcctcctgctgctgcaccagatccatttttgtcatctttaatttgtagtttgcct 67190

                                
Query: 541   gtggctgagccatcgaaag 559
             |||||||| ||||| ||||
Sbjct: 67189 gtggctgaaccatccaaag 67171



 Score =  174 bits (88), Expect = 2e-40
 Identities = 148/165 (89%), Gaps = 6/165 (3%)
 Strand = Plus / Minus

                                                                         
Query: 124   gatctgtacatggggttcgacgacgcggacgccg---gcggggacgaggtggaggcgcgc 180
             |||||||||||||||||||||||||||||||| |   ||| ||| |||||||||||||||
Sbjct: 70713 gatctgtacatggggttcgacgacgcggacgcggcgggcgtggaggaggtggaggcgcgc 70654

                                                                         
Query: 181   gg-ggcgg--aggcctacaactgccccttttgcggcgaggatttcgatttcgtaggcctc 237
             || |||||  |||| |||||||||||||| ||||||||||| ||||| ||||| | | ||
Sbjct: 70653 ggcggcggggaggcgtacaactgccccttctgcggcgaggacttcgacttcgtcgccttc 70594

                                                          
Query: 238   tgctgccacatcgacgacgagcacgccgtcgaggccaagagcggg 282
             ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 70593 tgctgccacgtcgacgacgagcacgccgtcgaggccaagagcggg 70549



 Score =  117 bits (59), Expect = 4e-23
 Identities = 74/79 (93%)
 Strand = Plus / Minus

                                                                         
Query: 284   tatgccccatctgtgctacgagggttggggtggacttgataggccacttgacaatgcagc 343
             |||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 67584 tatgtcccatctgtgctacaagggttggagtggacttgataggtcacttgacaatgcagc 67525

                                
Query: 344   atggaagttacttcaagat 362
             ||||||||||||| |||||
Sbjct: 67524 atggaagttactttaagat 67506
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  276 bits (139), Expect = 7e-71
 Identities = 184/199 (92%)
 Strand = Plus / Minus

                                                                            
Query: 361      atgcaacgcaggcgcagagtccgaaaagtatctcctgggtcccattctttgctgtctttg 420
                |||||||||||||| |||||||||||| ||||| | ||||||||||||||| ||||||||
Sbjct: 16854873 atgcaacgcaggcgaagagtccgaaaaatatcttcagggtcccattctttgttgtctttg 16854814

                                                                            
Query: 421      ttgagaaaggatttaagagacggcagtttgcagtcctttcttggtggatcatcctatgta 480
                ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 16854813 ttgagaaaggacttaagagatggcagtctgcagtcctttcttggtggatcatcctatgta 16854754

                                                                            
Query: 481      tctaatcctcccgccgcagcccctgatccatttttgtcatctttaatttgtagtttgcct 540
                ||||||||||| || || || || ||||||||||||||||||||||||||||||||||||
Sbjct: 16854753 tctaatcctcctgctgctgcaccagatccatttttgtcatctttaatttgtagtttgcct 16854694

                                   
Query: 541      gtggctgagccatcgaaag 559
                |||||||| ||||| ||||
Sbjct: 16854693 gtggctgaaccatccaaag 16854675



 Score =  174 bits (88), Expect = 2e-40
 Identities = 148/165 (89%), Gaps = 6/165 (3%)
 Strand = Plus / Minus

                                                                            
Query: 124      gatctgtacatggggttcgacgacgcggacgccg---gcggggacgaggtggaggcgcgc 180
                |||||||||||||||||||||||||||||||| |   ||| ||| |||||||||||||||
Sbjct: 16858217 gatctgtacatggggttcgacgacgcggacgcggcgggcgtggaggaggtggaggcgcgc 16858158

                                                                            
Query: 181      gg-ggcgg--aggcctacaactgccccttttgcggcgaggatttcgatttcgtaggcctc 237
                || |||||  |||| |||||||||||||| ||||||||||| ||||| ||||| | | ||
Sbjct: 16858157 ggcggcggggaggcgtacaactgccccttctgcggcgaggacttcgacttcgtcgccttc 16858098

                                                             
Query: 238      tgctgccacatcgacgacgagcacgccgtcgaggccaagagcggg 282
                ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16858097 tgctgccacgtcgacgacgagcacgccgtcgaggccaagagcggg 16858053



 Score =  117 bits (59), Expect = 4e-23
 Identities = 74/79 (93%)
 Strand = Plus / Minus

                                                                            
Query: 284      tatgccccatctgtgctacgagggttggggtggacttgataggccacttgacaatgcagc 343
                |||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 16855088 tatgtcccatctgtgctacaagggttggagtggacttgataggtcacttgacaatgcagc 16855029

                                   
Query: 344      atggaagttacttcaagat 362
                ||||||||||||| |||||
Sbjct: 16855028 atggaagttactttaagat 16855010
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>dbj|AK070900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073C10, full
            insert sequence
          Length = 3331

 Score =  174 bits (88), Expect = 2e-40
 Identities = 148/165 (89%), Gaps = 6/165 (3%)
 Strand = Plus / Plus

                                                                        
Query: 124  gatctgtacatggggttcgacgacgcggacgccg---gcggggacgaggtggaggcgcgc 180
            |||||||||||||||||||||||||||||||| |   ||| ||| |||||||||||||||
Sbjct: 1942 gatctgtacatggggttcgacgacgcggacgcggcgggcgtggaggaggtggaggcgcgc 2001

                                                                        
Query: 181  gg-ggcgg--aggcctacaactgccccttttgcggcgaggatttcgatttcgtaggcctc 237
            || |||||  |||| |||||||||||||| ||||||||||| ||||| ||||| | | ||
Sbjct: 2002 ggcggcggggaggcgtacaactgccccttctgcggcgaggacttcgacttcgtcgccttc 2061

                                                         
Query: 238  tgctgccacatcgacgacgagcacgccgtcgaggccaagagcggg 282
            ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2062 tgctgccacgtcgacgacgagcacgccgtcgaggccaagagcggg 2106
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 248     tcgacgacgagcacgccgtcga 269
               ||||||||||||||||||||||
Sbjct: 2435102 tcgacgacgagcacgccgtcga 2435123
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 248     tcgacgacgagcacgccgtcga 269
               ||||||||||||||||||||||
Sbjct: 1014475 tcgacgacgagcacgccgtcga 1014496
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>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12
          Length = 306650

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 142    gacgacgcggacgccggcgggg 163
              ||||||||||||||||||||||
Sbjct: 129733 gacgacgcggacgccggcgggg 129754
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 248     tcgacgacgagcacgccgtcga 269
               ||||||||||||||||||||||
Sbjct: 2331966 tcgacgacgagcacgccgtcga 2331987
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>gb|AC129803.3| Homo sapiens 3 BAC RP11-15N24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 185721

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 394    cctgggtcccattctttgctgt 415
              ||||||||||||||||||||||
Sbjct: 132739 cctgggtcccattctttgctgt 132718
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>gb|BC093085.1| Homo sapiens cDNA clone IMAGE:30530427
          Length = 2560

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 394 cctgggtcccattctttgctgt 415
           ||||||||||||||||||||||
Sbjct: 69  cctgggtcccattctttgctgt 48
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>dbj|AB091435.1| Burkholderia multivorans genes for probable lipoprotein transmembrane,
             3-isopropylmalate dehydratase large and small subunits,
             3-isopropylmalate dehydrogenase oxidoreductase,
             aspartate-semialdehyde dehydrogenase, probable
             transmembrane protein, tRNA pseudouridine synthase,
             N-(5'-phosphoribosyl) anthranilate isomerase, tryptophan
             synthase beta chain, probable DNA-methyltransferasee,
             tryptophan synthase alpha chain, acetyl-CoA carboxylase
             beta subunit, partial and complete cds
          Length = 12977

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 248   tcgacgacgagcacgccgtcga 269
             ||||||||||||||||||||||
Sbjct: 12225 tcgacgacgagcacgccgtcga 12204
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>emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris complete rubradirin gene
            cluster, strain NRRL 3061
          Length = 105657

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 140  tcgacgacgcggacgccggcgg 161
            ||||||||||||||||||||||
Sbjct: 6193 tcgacgacgcggacgccggcgg 6214
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 248    tcgacgacgagcacgccgtcga 269
              ||||||||||||||||||||||
Sbjct: 797596 tcgacgacgagcacgccgtcga 797575
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 248     tcgacgacgagcacgccgtcg 268
               |||||||||||||||||||||
Sbjct: 2401306 tcgacgacgagcacgccgtcg 2401286
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 248     tcgacgacgagcacgccgtcg 268
               |||||||||||||||||||||
Sbjct: 1633087 tcgacgacgagcacgccgtcg 1633067
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 248     tcgacgacgagcacgccgtcg 268
               |||||||||||||||||||||
Sbjct: 2879801 tcgacgacgagcacgccgtcg 2879781
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 248     tcgacgacgagcacgccgtcg 268
               |||||||||||||||||||||
Sbjct: 2609962 tcgacgacgagcacgccgtcg 2609942
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>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence
          Length = 168843

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 411   gctgtctttgttgagaaagga 431
             |||||||||||||||||||||
Sbjct: 91590 gctgtctttgttgagaaagga 91570
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>gb|AF245690.1|AF245690 Streptomyces verticillus putative N-acetyl-glucosamine transferase
            gene, partial cds; and putative N-acetyl-glucosamine
            2-epimerase and hypothetical protein genes, complete cds
          Length = 5222

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 135  ggggttcgacgacgcggacgc 155
            |||||||||||||||||||||
Sbjct: 2549 ggggttcgacgacgcggacgc 2529
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 166     gaggtggaggcgcgcggggcg 186
               |||||||||||||||||||||
Sbjct: 4765305 gaggtggaggcgcgcggggcg 4765285
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>dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53I21, complete
             sequence
          Length = 156583

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 411   gctgtctttgttgagaaagga 431
             |||||||||||||||||||||
Sbjct: 22760 gctgtctttgttgagaaagga 22740
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 248     tcgacgacgagcacgccgtcg 268
               |||||||||||||||||||||
Sbjct: 2279117 tcgacgacgagcacgccgtcg 2279137
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>dbj|AP000071.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 7/19
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 411   gctgtctttgttgagaaagga 431
             |||||||||||||||||||||
Sbjct: 39003 gctgtctttgttgagaaagga 39023
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>ref|NM_119602.1| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
           AT4G34370 mRNA, complete cds
          Length = 2280

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 408 tttgctgtctttgttgagaaagga 431
           |||||||| |||||||||||||||
Sbjct: 470 tttgctgtgtttgttgagaaagga 493
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>ref|NM_111347.1| Arabidopsis thaliana unknown protein AT3G04750 mRNA, complete cds
          Length = 1986

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 ttgcggcgaggatttcgatt 226
           ||||||||||||||||||||
Sbjct: 19  ttgcggcgaggatttcgatt 38
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>gb|AY374476.1| Tetraodon nigroviridis class I helical cytokine receptor member 4
           (CRFA4) mRNA, complete cds
          Length = 2476

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 149 cggacgccggcggggacgag 168
           ||||||||||||||||||||
Sbjct: 945 cggacgccggcggggacgag 964
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>ref|XM_465933.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1074

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 tcgacgacgagcacgccgtc 267
           ||||||||||||||||||||
Sbjct: 731 tcgacgacgagcacgccgtc 712
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>gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete
             sequence
          Length = 253151

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 509   catttttgtcatctttaatttgta 532
             ||||||| ||||||||||||||||
Sbjct: 23042 catttttatcatctttaatttgta 23065
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>gb|AY028643.1| Plasmodium falciparum erythrocyte membrane protein-1 (var) gene,
            partial cds
          Length = 8750

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 508  ccatttttgtcatctttaat 527
            ||||||||||||||||||||
Sbjct: 6839 ccatttttgtcatctttaat 6820
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>gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome III BAC F7O18 genomic sequence,
             complete sequence
          Length = 95310

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ttgcggcgaggatttcgatt 226
             ||||||||||||||||||||
Sbjct: 81711 ttgcggcgaggatttcgatt 81692
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>gb|AC091173.10| Homo sapiens chromosome 8, clone RP11-280G9, complete sequence
          Length = 142265

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   aggcgcgcggggcggaggcc 192
             ||||||||||||||||||||
Sbjct: 69905 aggcgcgcggggcggaggcc 69924
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>emb|AL353732.14| Human DNA sequence from clone RP11-354P17 on chromosome 9 Contains the
              IFNA6 gene for interferon, alpha 6, the IFNA13 gene for
              interferon, alpha 13, the IFNA2 gene for interferon, alpha
              2, the IFNA8 gene for interferon, alpha 8, an interferon,
              omega 1 (IFNW1) pseudogene, the IFNA1 gene for interferon,
              alpha 1, 4 interferon pseudogenes, the 3' end of a novel
              gene and a CpG island, complete sequence
          Length = 173211

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    atttttgtcatctttaattt 529
              ||||||||||||||||||||
Sbjct: 116628 atttttgtcatctttaattt 116647



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   atttttgtcatctttaattt 529
             ||||||||||||||||||||
Sbjct: 12844 atttttgtcatctttaattt 12825
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>gb|AF188024.3| Homo sapiens chromosome 12 clone CTC-790L10 map 12p11.2, complete
             sequence
          Length = 111108

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   ctttaatttgtagtttgcct 540
             ||||||||||||||||||||
Sbjct: 40247 ctttaatttgtagtttgcct 40228
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>emb|AL021997.1|HS874C20 Human DNA sequence from clone RP5-874C20 on chromosome 6p22.1-22.3
            Contains the 5' end of a novel protein similar to zinc
            finger protein 306 (ZNF306, ZFP47), the gene for a novel
            C2H2 type zinc finger protein, a novel gene, a zinc
            finger protein SRE-ZBP pseudogene and a CpG island,
            complete sequence
          Length = 97847

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  tggacttgataggccacttgacaa 337
            |||| |||||||||||||||||||
Sbjct: 8175 tggatttgataggccacttgacaa 8198
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>gb|AY117264.1| Arabidopsis thaliana unknown protein (At4g34370) mRNA, complete cds
          Length = 1825

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 408 tttgctgtctttgttgagaaagga 431
           |||||||| |||||||||||||||
Sbjct: 256 tttgctgtgtttgttgagaaagga 279
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>gb|AY050864.1| Arabidopsis thaliana unknown protein (At4g34370) mRNA, complete cds
          Length = 2296

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 408 tttgctgtctttgttgagaaagga 431
           |||||||| |||||||||||||||
Sbjct: 470 tttgctgtgtttgttgagaaagga 493
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>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81
          Length = 195921

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 408   tttgctgtctttgttgagaaagga 431
             |||||||| |||||||||||||||
Sbjct: 80906 tttgctgtgtttgttgagaaagga 80929
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>emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA project)
          Length = 114367

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 408   tttgctgtctttgttgagaaagga 431
             |||||||| |||||||||||||||
Sbjct: 72387 tttgctgtgtttgttgagaaagga 72410
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>emb|CR937026.1|PT085P01 Pan troglodytes chromosome 11 BAC PTB-085P01, complete sequence
          Length = 218832

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 510   atttttgtcatctttaattt 529
             ||||||||||||||||||||
Sbjct: 51315 atttttgtcatctttaattt 51334
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>emb|CR628311.1| Human DNA sequence from clone XX-NCIH2171_5AD01, complete sequence
          Length = 114317

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    aggcgcgcggggcggaggcc 192
              ||||||||||||||||||||
Sbjct: 102903 aggcgcgcggggcggaggcc 102922
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>emb|CR626894.1| Human DNA sequence from clone XX-NCIH2171_3M21, complete sequence
          Length = 126392

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    aggcgcgcggggcggaggcc 192
              ||||||||||||||||||||
Sbjct: 110219 aggcgcgcggggcggaggcc 110200
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>dbj|AK123280.1| Homo sapiens cDNA FLJ41286 fis, clone BRAMY2038475
          Length = 2313

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 314 tggacttgataggccacttgacaa 337
           |||| |||||||||||||||||||
Sbjct: 370 tggatttgataggccacttgacaa 393
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>gb|AC067881.5| Homo sapiens chromosome 8, clone RP11-687K23, complete sequence
          Length = 186676

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    aggcgcgcggggcggaggcc 192
              ||||||||||||||||||||
Sbjct: 151994 aggcgcgcggggcggaggcc 151975
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>gb|AC022363.24| Homo sapiens 12 BAC RP11-1151B7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114933

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   ctttaatttgtagtttgcct 540
             ||||||||||||||||||||
Sbjct: 48348 ctttaatttgtagtttgcct 48329
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    cggcggggacgaggtggagg 175
              ||||||||||||||||||||
Sbjct: 491600 cggcggggacgaggtggagg 491619
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 158      gcggggacgaggtggaggcg 177
                ||||||||||||||||||||
Sbjct: 18961441 gcggggacgaggtggaggcg 18961460
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 196      aactgccccttttgcggcga 215
                ||||||||||||||||||||
Sbjct: 14882498 aactgccccttttgcggcga 14882517
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 248      tcgacgacgagcacgccgtc 267
                ||||||||||||||||||||
Sbjct: 18386042 tcgacgacgagcacgccgtc 18386023
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>emb|BX255890.6| Zebrafish DNA sequence from clone CH211-236L15, complete sequence
          Length = 175490

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 517   tcatctttaatttgtagttt 536
             ||||||||||||||||||||
Sbjct: 68725 tcatctttaatttgtagttt 68744
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>gb|AC097473.3| Homo sapiens BAC clone RP11-75N20 from 4, complete sequence
          Length = 150573

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   aggtggaggcgcgcggggcg 186
             ||||||||||||||||||||
Sbjct: 26269 aggtggaggcgcgcggggcg 26288
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>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence
          Length = 187543

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 314   tggacttgataggccacttgacaa 337
             |||| |||||||||||||||||||
Sbjct: 19603 tggatttgataggccacttgacaa 19580
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     gaggcgcgcggggcggaggc 191
               ||||||||||||||||||||
Sbjct: 3607177 gaggcgcgcggggcggaggc 3607158



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 148     gcggacgccggcggggacgaggtggagg 175
               |||| |||||||| ||||||||||||||
Sbjct: 3053483 gcggtcgccggcgtggacgaggtggagg 3053456



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 168    ggtggaggcgcgcggggcggaggc 191
              |||||||||||||| |||||||||
Sbjct: 152312 ggtggaggcgcgcgcggcggaggc 152335
to top
>dbj|AP005928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0031F23
          Length = 128090

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   aactgccccttttgcggcga 215
             ||||||||||||||||||||
Sbjct: 97771 aactgccccttttgcggcga 97790
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>dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0001A11
          Length = 153252

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   tcgacgacgagcacgccgtc 267
             ||||||||||||||||||||
Sbjct: 48966 tcgacgacgagcacgccgtc 48947
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 158      gcggggacgaggtggaggcg 177
                ||||||||||||||||||||
Sbjct: 18887668 gcggggacgaggtggaggcg 18887687
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>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 153064

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 158  gcggggacgaggtggaggcg 177
            ||||||||||||||||||||
Sbjct: 8938 gcggggacgaggtggaggcg 8919
to top
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151203

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   gcggggacgaggtggaggcg 177
             ||||||||||||||||||||
Sbjct: 57558 gcggggacgaggtggaggcg 57577
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>emb|AJ510204.1|ATH510204 Arabidopsis thaliana ari1 gene for ARIADNE-like protein ARI1, exons
           1-6
          Length = 2491

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 408 tttgctgtctttgttgagaaagga 431
           |||||||| |||||||||||||||
Sbjct: 663 tttgctgtgtttgttgagaaagga 686


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,897,613
Number of Sequences: 3902068
Number of extensions: 3897613
Number of successful extensions: 79222
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77865
Number of HSP's gapped (non-prelim): 1347
length of query: 559
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 536
effective length of database: 17,143,297,704
effective search space: 9188807569344
effective search space used: 9188807569344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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