ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd16e18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1M030_ARATH (P93276) Hypothetical mitochondrial protein AtMg00030... 48 1e-05
2IKKB_MOUSE (O88351) Inhibitor of nuclear factor kappa B kinase b... 29 6.3

>M030_ARATH (P93276) Hypothetical mitochondrial protein AtMg00030 (ORF107a)|
          Length = 107

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 22/24 (91%), Positives = 22/24 (91%)
 Frame = -2

Query: 117 MFQFAKFEKSKERRLATELGYGXP 46
           MFQFAKF KSKERRLATELGYG P
Sbjct: 1   MFQFAKFSKSKERRLATELGYGFP 24



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>IKKB_MOUSE (O88351) Inhibitor of nuclear factor kappa B kinase beta subunit|
           (EC 2.7.11.10) (I-kappa-B-kinase beta) (IkBKB)
           (IKK-beta) (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear
           factor NF-kappa-B inhibitor kinase beta) (NFKBIKB)
          Length = 757

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -1

Query: 388 ENQFTARPTPSSVLCCLCLRPKTVADFVQLRR 293
           E Q T RP P SV C L   PK    F QLR+
Sbjct: 398 ETQITPRPPPESVSCIL-QEPKRNLSFFQLRK 428


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,985,298
Number of Sequences: 219361
Number of extensions: 1321364
Number of successful extensions: 3067
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3064
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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