| Clone Name | basd16e18 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | M030_ARATH (P93276) Hypothetical mitochondrial protein AtMg00030... | 48 | 1e-05 | 2 | IKKB_MOUSE (O88351) Inhibitor of nuclear factor kappa B kinase b... | 29 | 6.3 |
|---|
>M030_ARATH (P93276) Hypothetical mitochondrial protein AtMg00030 (ORF107a)| Length = 107 Score = 48.1 bits (113), Expect = 1e-05 Identities = 22/24 (91%), Positives = 22/24 (91%) Frame = -2 Query: 117 MFQFAKFEKSKERRLATELGYGXP 46 MFQFAKF KSKERRLATELGYG P Sbjct: 1 MFQFAKFSKSKERRLATELGYGFP 24
>IKKB_MOUSE (O88351) Inhibitor of nuclear factor kappa B kinase beta subunit| (EC 2.7.11.10) (I-kappa-B-kinase beta) (IkBKB) (IKK-beta) (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear factor NF-kappa-B inhibitor kinase beta) (NFKBIKB) Length = 757 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = -1 Query: 388 ENQFTARPTPSSVLCCLCLRPKTVADFVQLRR 293 E Q T RP P SV C L PK F QLR+ Sbjct: 398 ETQITPRPPPESVSCIL-QEPKRNLSFFQLRK 428 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,985,298 Number of Sequences: 219361 Number of extensions: 1321364 Number of successful extensions: 3067 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3003 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3064 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)