| Clone Name | basd16e08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 268 bits (135), Expect = 2e-68 Identities = 195/215 (90%) Strand = Plus / Minus Query: 372 agatttcacagctagagctggaggaagctcagagagctgtaggagaatttggacgtgaca 431 |||| ||||||| ||| ||||||| || |||||||||||||||||||||||| |||||| Sbjct: 5687345 agatctcacagcaagaattggaggaggcgcagagagctgtaggagaatttggaggtgaca 5687286 Query: 432 accgtgcaggaatcgaaggtacattgcataggatatctgccataaggagtagaaaaggac 491 | ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 5687285 atcgtgcaggaatcgaaggtacattacatagaatatctgccataaggagcagaaaaggaa 5687226 Query: 492 tggttgttggtttgacctgtcgagttggccgtgccgtcaatgggcatgttgatatggtcc 551 ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 5687225 tggttgttggtttaacctgtcgagttggccgtgccgttactgggcatgttgatatggtcc 5687166 Query: 552 gcgatcttttaaactacaaagagagcattctgttt 586 | ||||| ||||| |||||||| |||||| ||||| Sbjct: 5687165 gtgatctcttaaattacaaagaaagcattttgttt 5687131 Score = 91.7 bits (46), Expect = 3e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 305 gatttggggagacaacctgaggcacgtttccttggtaattctggtggccagtatctacgg 364 ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 5687515 gatttggggagacgacctgaggcacgtttccttggtgactctggtggccaatatctacgg 5687456 Query: 365 ga 366 || Sbjct: 5687455 ga 5687454 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 238 tacagattctacccaaggatttacgagataatctgcagaatgaacctagaa 288 ||||| ||||||| | ||||| |||||||||||||||||||||||||||| Sbjct: 5687693 tacaggttctaccaagagatttgcgagataatctgcagaatgaacctagaa 5687643
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 268 bits (135), Expect = 2e-68 Identities = 195/215 (90%) Strand = Plus / Minus Query: 372 agatttcacagctagagctggaggaagctcagagagctgtaggagaatttggacgtgaca 431 |||| ||||||| ||| ||||||| || |||||||||||||||||||||||| |||||| Sbjct: 5687338 agatctcacagcaagaattggaggaggcgcagagagctgtaggagaatttggaggtgaca 5687279 Query: 432 accgtgcaggaatcgaaggtacattgcataggatatctgccataaggagtagaaaaggac 491 | ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 5687278 atcgtgcaggaatcgaaggtacattacatagaatatctgccataaggagcagaaaaggaa 5687219 Query: 492 tggttgttggtttgacctgtcgagttggccgtgccgtcaatgggcatgttgatatggtcc 551 ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 5687218 tggttgttggtttaacctgtcgagttggccgtgccgttactgggcatgttgatatggtcc 5687159 Query: 552 gcgatcttttaaactacaaagagagcattctgttt 586 | ||||| ||||| |||||||| |||||| ||||| Sbjct: 5687158 gtgatctcttaaattacaaagaaagcattttgttt 5687124 Score = 91.7 bits (46), Expect = 3e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 305 gatttggggagacaacctgaggcacgtttccttggtaattctggtggccagtatctacgg 364 ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 5687508 gatttggggagacgacctgaggcacgtttccttggtgactctggtggccaatatctacgg 5687449 Query: 365 ga 366 || Sbjct: 5687448 ga 5687447 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 238 tacagattctacccaaggatttacgagataatctgcagaatgaacctagaa 288 ||||| ||||||| | ||||| |||||||||||||||||||||||||||| Sbjct: 5687686 tacaggttctaccaagagatttgcgagataatctgcagaatgaacctagaa 5687636
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 268 bits (135), Expect = 2e-68 Identities = 195/215 (90%) Strand = Plus / Minus Query: 372 agatttcacagctagagctggaggaagctcagagagctgtaggagaatttggacgtgaca 431 |||| ||||||| ||| ||||||| || |||||||||||||||||||||||| |||||| Sbjct: 41868 agatctcacagcaagaattggaggaggcgcagagagctgtaggagaatttggaggtgaca 41809 Query: 432 accgtgcaggaatcgaaggtacattgcataggatatctgccataaggagtagaaaaggac 491 | ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 41808 atcgtgcaggaatcgaaggtacattacatagaatatctgccataaggagcagaaaaggaa 41749 Query: 492 tggttgttggtttgacctgtcgagttggccgtgccgtcaatgggcatgttgatatggtcc 551 ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 41748 tggttgttggtttaacctgtcgagttggccgtgccgttactgggcatgttgatatggtcc 41689 Query: 552 gcgatcttttaaactacaaagagagcattctgttt 586 | ||||| ||||| |||||||| |||||| ||||| Sbjct: 41688 gtgatctcttaaattacaaagaaagcattttgttt 41654 Score = 91.7 bits (46), Expect = 3e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 305 gatttggggagacaacctgaggcacgtttccttggtaattctggtggccagtatctacgg 364 ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||| Sbjct: 42038 gatttggggagacgacctgaggcacgtttccttggtgactctggtggccaatatctacgg 41979 Query: 365 ga 366 || Sbjct: 41978 ga 41977 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 238 tacagattctacccaaggatttacgagataatctgcagaatgaacctagaa 288 ||||| ||||||| | ||||| |||||||||||||||||||||||||||| Sbjct: 42216 tacaggttctaccaagagatttgcgagataatctgcagaatgaacctagaa 42166
>emb|AL031847.17|HS120G22 Human DNA sequence from clone RP1-120G22 on chromosome 1p36.21-36.33 Contains the 5' end of the CHD5 gene for chromodomain helicase DNA binding protein 5, the RPL22 gene for ribosomal protein L22, eight novel genes, the ICMT gene for isoprenylcysteine carboxyl methyltransferase, possible ortholog of rodent transcription factor HES-3, the 3' end of the gene for brain acyl-CoA hydrolase (BACH) and seven CpG islands, complete sequence Length = 166518 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 gctcagagcctgggcaggcactgccc 171 ||||||||||||||||||| |||||| Sbjct: 99837 gctcagagcctgggcaggccctgccc 99812
>ref|NM_179413.1| Arabidopsis thaliana ATP binding AT1G33290 transcript variant AT1G33290.2 mRNA, complete cds Length = 1039 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 ggaatcgaaggtacattgcataggatatc 468 ||||| |||||||||||||| |||||||| Sbjct: 376 ggaatagaaggtacattgcacaggatatc 404
>ref|NM_103058.2| Arabidopsis thaliana ATP binding / nucleoside-triphosphatase/ nucleotide binding AT1G33290 transcript variant AT1G33290.1 mRNA, complete cds Length = 1270 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 ggaatcgaaggtacattgcataggatatc 468 ||||| |||||||||||||| |||||||| Sbjct: 376 ggaatagaaggtacattgcacaggatatc 404
>ref|NM_195751.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0008A05.1), mRNA Length = 824 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgccgctgccggcgctctcc 43 ||||||||||||||||||||| Sbjct: 605 ccgccgctgccggcgctctcc 585
>gb|BT014906.1| Arabidopsis thaliana At1g33290 gene, complete cds Length = 1147 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 ggaatcgaaggtacattgcataggatatc 468 ||||| |||||||||||||| |||||||| Sbjct: 364 ggaatagaaggtacattgcacaggatatc 392
>gb|BT015032.1| Arabidopsis thaliana At1g33290 mRNA, complete cds Length = 1140 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 ggaatcgaaggtacattgcataggatatc 468 ||||| |||||||||||||| |||||||| Sbjct: 361 ggaatagaaggtacattgcacaggatatc 389
>gb|AF452730.1| Rattus norvegicus synaptogenesis-related mRNA sequence 4 Length = 4318 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 ggaggaagctcagagagctgtagga 415 |||||||||||||||||| |||||| Sbjct: 3172 ggaggaagctcagagagcagtagga 3196
>gb|AC145818.1| Pan troglodytes BAC clone RP43-8O12 from 7, complete sequence Length = 92193 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 aggacgacctctctgagcttc 237 ||||||||||||||||||||| Sbjct: 62102 aggacgacctctctgagcttc 62122
>gb|AC091153.10| Homo sapiens chromosome 17, clone RP11-314A20, complete sequence Length = 195494 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 tcatcttcatcctacccaccc 111 ||||||||||||||||||||| Sbjct: 97557 tcatcttcatcctacccaccc 97537
>gb|AC027820.12| Homo sapiens chromosome 17, clone RP11-198F11, complete sequence Length = 154353 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 tcatcttcatcctacccaccc 111 ||||||||||||||||||||| Sbjct: 137147 tcatcttcatcctacccaccc 137127
>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0008A05, complete sequence Length = 124366 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgccgctgccggcgctctcc 43 ||||||||||||||||||||| Sbjct: 44281 ccgccgctgccggcgctctcc 44261
>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete sequence Length = 150465 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgccgctgccggcgctctcc 43 ||||||||||||||||||||| Sbjct: 94746 ccgccgctgccggcgctctcc 94726
>gb|AC112515.4| Homo sapiens chromosome 3 clone RP11-697B5, complete sequence Length = 179154 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 tcacagctagagctggaggaa 397 ||||||||||||||||||||| Sbjct: 159296 tcacagctagagctggaggaa 159316
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgccgctgccggcgctctcc 43 ||||||||||||||||||||| Sbjct: 8839674 ccgccgctgccggcgctctcc 8839654
>emb|BX816642.1|CNS0ABLB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH5ZG08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1223 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 ggaatcgaaggtacattgcataggatatc 468 ||||| |||||||||||||| |||||||| Sbjct: 364 ggaatagaaggtacattgcacaggatatc 392
>gb|AC147282.3| Pan troglodytes BAC clone RP43-86L11 from chromosome 7, complete sequence Length = 223086 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 aggacgacctctctgagcttc 237 ||||||||||||||||||||| Sbjct: 215278 aggacgacctctctgagcttc 215258
>gb|AC145873.3| Pan troglodytes BAC clone RP43-20K16 from chromosome 7, complete sequence Length = 149916 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 aggacgacctctctgagcttc 237 ||||||||||||||||||||| Sbjct: 21449 aggacgacctctctgagcttc 21469
>gb|AC027035.5|AC027035 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence Length = 81609 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 440 ggaatcgaaggtacattgcataggatatc 468 ||||| |||||||||||||| |||||||| Sbjct: 51275 ggaatagaaggtacattgcacaggatatc 51303
>dbj|AK104034.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G07, full insert sequence Length = 751 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgccgctgccggcgctctcc 43 ||||||||||||||||||||| Sbjct: 534 ccgccgctgccggcgctctcc 514
>dbj|AK071458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092O07, full insert sequence Length = 750 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgccgctgccggcgctctcc 43 ||||||||||||||||||||| Sbjct: 533 ccgccgctgccggcgctctcc 513
>dbj|AK070152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043A18, full insert sequence Length = 750 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgccgctgccggcgctctcc 43 ||||||||||||||||||||| Sbjct: 533 ccgccgctgccggcgctctcc 513
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ccgccgctgccggcgctctcc 43 ||||||||||||||||||||| Sbjct: 8844813 ccgccgctgccggcgctctcc 8844793
>gb|AC111024.13| Mus musculus chromosome 17, clone RP23-103P1, complete sequence Length = 219128 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aagagagcattctgtttttg 589 |||||||||||||||||||| Sbjct: 112937 aagagagcattctgtttttg 112918
>gb|AC117803.12| Mus musculus chromosome 17, clone RP24-562I11, complete sequence Length = 168136 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tcctcatcttcatcctaccc 107 |||||||||||||||||||| Sbjct: 151549 tcctcatcttcatcctaccc 151568
>gb|AC091477.6| Mus musculus chromosome 1, clone RP23-309P1, complete sequence Length = 218109 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 acattgcataggatatctgccata 475 |||||||||| ||||||||||||| Sbjct: 156355 acattgcatatgatatctgccata 156332
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gtcaccgccgctgccggcgc 38 |||||||||||||||||||| Sbjct: 1218148 gtcaccgccgctgccggcgc 1218129
>gb|AC166969.4| Mus musculus chromosome 1, clone RP23-226P1, complete sequence Length = 160078 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 acattgcataggatatctgccata 475 |||||||||| ||||||||||||| Sbjct: 9724 acattgcatatgatatctgccata 9701
>ref|XM_807353.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053506063.59) partial mRNA Length = 10383 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ccgccgctgccggcgctctc 42 |||||||||||||||||||| Sbjct: 9227 ccgccgctgccggcgctctc 9246
>gb|AC123058.3| Mus musculus BAC clone RP23-188J8 from 19, complete sequence Length = 194636 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gcaccttcctcgccttagtc 21 |||||||||||||||||||| Sbjct: 32034 gcaccttcctcgccttagtc 32015
>ref|XM_786067.1| PREDICTED: Strongylocentrotus purpuratus similar to nucleoporin 107 (LOC586279), mRNA Length = 3009 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 agctggaggaagctcagaga 406 |||||||||||||||||||| Sbjct: 1298 agctggaggaagctcagaga 1317
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gtcaccgccgctgccggcgc 38 |||||||||||||||||||| Sbjct: 184814 gtcaccgccgctgccggcgc 184795
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gtcaccgccgctgccggcgc 38 |||||||||||||||||||| Sbjct: 232973 gtcaccgccgctgccggcgc 232954
>gb|AC108081.2| Homo sapiens chromosome 16 clone CTC-661I16, complete sequence Length = 100808 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gctcagagcctgggcaggca 165 |||||||||||||||||||| Sbjct: 58959 gctcagagcctgggcaggca 58978
>emb|CT010580.7| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete sequence Length = 220567 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aagagagcattctgtttttg 589 |||||||||||||||||||| Sbjct: 151706 aagagagcattctgtttttg 151687
>emb|CR854964.10| Zebrafish DNA sequence from clone DKEY-58J19 in linkage group 1, complete sequence Length = 180969 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 gagagctgtaggagaatttg 422 |||||||||||||||||||| Sbjct: 75755 gagagctgtaggagaatttg 75736 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,663,418 Number of Sequences: 3902068 Number of extensions: 4663418 Number of successful extensions: 92898 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92655 Number of HSP's gapped (non-prelim): 243 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)