>gb|AF186240.1|AF186240 Secale cereale thioredoxin-like protein (Trx) mRNA, partial cds
          Length = 826

 Score =  236 bits (119), Expect = 2e-59
 Identities = 185/204 (90%), Gaps = 6/204 (2%)
 Strand = Plus / Plus

                                                                       
Query: 28  ccacaccaccggggnagctctcccttttacgtcaatcaatcgaaacccagttaaagaacc 87
           |||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 252 ccacaccaccggag-agctctcccttttacgttaatcaatcgaa-cccagttaaagaacc 309

                                                                       
Query: 88  tcttaattgcccgccaggnagatccgccaggcttatcttcgccgtctcctccgacctcgc 147
           |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 310 tcttaattgcccgccagg-agatccgccaggcttatcttctccgtctcctccgacctcac 368

                                                                       
Query: 148 ctccannnnnnntcgccccgcggcttctgggttccttggcgccaaaatccccgcttccga 207
           || |        ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 369 cttc---ccctctcgccccgcggcttctgggctccttggcgccaaaatcctcgcttccga 425

                                   
Query: 208 tcccaggccttcaggaatcagggg 231
           ||||||||||||||||| ||||||
Sbjct: 426 tcccaggccttcaggaaccagggg 449

>gb|AF159386.1| Secale cereale thioredoxin-like protein (Trx) mRNA, complete cds
          Length = 939

 Score =  143 bits (72), Expect = 3e-31
 Identities = 105/112 (93%), Gaps = 3/112 (2%)
 Strand = Plus / Plus

                                                                       
Query: 28  ccacaccaccggggnagctctcccttttacgtcaatcaatcgaaacccagttaaagaacc 87
           |||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 306 ccacaccaccggag-agctctcccttttacgttaatcaatcgaa-cccagttaaagaacc 363

                                                               
Query: 88  tcttaattgcccgccaggnagatccgccaggcttatcttcgccgtctcctcc 139
           |||||||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct: 364 tcttaattgcccgccagg-agatccgccaggcttaccttctccgtctcctcc 414



 Score =  105 bits (53), Expect = 6e-20
 Identities = 68/72 (94%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                       
Query: 160 tcgccccgcggcttctgggttccttggcgccaaaatccccgcttccgatcccaggccttc 219
           |||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 434 tcgccccgcgg--tctgggttccttggcgccaaaatcgtcgcttccgatcccaggccttc 491

                       
Query: 220 aggaatcagggg 231
           ||||||||||||
Sbjct: 492 aggaatcagggg 503

>gb|AY204511.1| Leymus chinensis thioredoxin h gene, complete cds
          Length = 2257

 Score =  121 bits (61), Expect = 1e-24
 Identities = 113/129 (87%), Gaps = 7/129 (5%)
 Strand = Plus / Plus

                                                                       
Query: 86  cctcttaattgcccgccaggnagatccgccaggcttatcttcgccgtctcctccgacctc 145
           |||||||||||||||||||| |||||||||||||||||| ||  ||||||||||||||||
Sbjct: 1   cctcttaattgcccgccagg-agatccgccaggcttatcgtcttcgtctcctccgacctc 59

                                                                       
Query: 146 gcctccannnnnnntcgccccgcggcttctgggttccttggcgccaaaatccccgcttcc 205
            |||||        |||||||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 60  acctcc----cccgtcgccccgcgg--tctgggttccttggcgccaaaatcctcgcttcc 113

                    
Query: 206 gatcccagg 214
           |||||||||
Sbjct: 114 gatcccagg 122



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 aggccttcaggaatcagggg 231
           ||||||||||||||||||||
Sbjct: 656 aggccttcaggaatcagggg 675

>gb|AF159385.1| Hordeum bulbosum thioredoxin-like protein (Trx) mRNA, complete cds
          Length = 1010

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 43  agctctcccttttacgtcaatcaatcgaaacccagttaaagaacctcttaattgcccg 100
           |||||| |||| ||||| |||||||| || || |||||| ||||||||||||||||||
Sbjct: 414 agctcttccttgtacgttaatcaatccaacccgagttaaggaacctcttaattgcccg 471



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 39/42 (92%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 182 cttggcgccaaaatccccgcttccgatccca-ggccttcagg 222
           |||||||||||||||||| ||||||||| || ||||||||||
Sbjct: 525 cttggcgccaaaatccccccttccgatctcagggccttcagg 566

>gb|AF159388.1| Phalaris coerulescens thioredoxin-like protein (Trx) mRNA, Trx-1
           allele, complete cds
          Length = 978

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 39/42 (92%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 182 cttggcgccaaaatccccgcttccgatccca-ggccttcagg 222
           ||||||||||||||||||||| || |||||| ||||||||||
Sbjct: 493 cttggcgccaaaatccccgctccccatcccagggccttcagg 534

>gb|AF159389.1|AF159389 Phalaris coerulescens thioredoxin-like protein (Trx) mRNA, Trx-2
           allele, complete cds
          Length = 975

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 39/42 (92%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 182 cttggcgccaaaatccccgcttccgatccca-ggccttcagg 222
           ||||||||||||||||||||| || |||||| ||||||||||
Sbjct: 490 cttggcgccaaaatccccgctccccatcccagggccttcagg 531

>gb|AF159387.1| Lolium perenne thioredoxin-like protein (Trx) mRNA, complete cds
          Length = 1024

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 72/88 (81%), Gaps = 5/88 (5%)
 Strand = Plus / Plus

                                                                       
Query: 50  ccttttacgtcaatcaatcgaaacccagttaaagaacctcttaattgcccgccaggnaga 109
           |||| |||||||||||||| |  || |||||| | |||||||||||||||     | |||
Sbjct: 434 ccttctacgtcaatcaatccagcccgagttaagggacctcttaattgccc-----ggaga 488

                                       
Query: 110 tccgccaggcttatcttcgccgtctcct 137
           ||||||||||||||| ||  ||||||||
Sbjct: 489 tccgccaggcttatcgtcttcgtctcct 516



 Score = 44.1 bits (22), Expect = 0.19
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 182 cttggcgccaaaatccccgcttccgatccca-ggccttcagg 222
           ||||||||||||||||||  |||||||| || ||||||||||
Sbjct: 539 cttggcgccaaaatccccctttccgatctcagggccttcagg 580

>gb|AC025781.8|AC025781 Arabidopsis thaliana chromosome 1 BAC F15C21 genomic sequence, complete
             sequence
          Length = 112862

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 76    agttaaagaacctcttaattgc 97
             ||||||||||||||||||||||
Sbjct: 70787 agttaaagaacctcttaattgc 70766

>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence
          Length = 213676

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   cccaggccttcaggaatcagg 229
             |||||||||||||||||||||
Sbjct: 71355 cccaggccttcaggaatcagg 71335

>gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, complete sequence
          Length = 163642

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   cccaggccttcaggaatcagg 229
             |||||||||||||||||||||
Sbjct: 72065 cccaggccttcaggaatcagg 72085

>gb|AC019294.7| Homo sapiens chromosome , clone RP11-24M17, complete sequence
          Length = 164310

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 209    cccaggccttcaggaatcagg 229
              |||||||||||||||||||||
Sbjct: 118059 cccaggccttcaggaatcagg 118079

>gb|AC010931.17| Homo sapiens chromosome 15, clone RP11-247C2, complete sequence
          Length = 93600

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   cccaggccttcaggaatcagg 229
             |||||||||||||||||||||
Sbjct: 65574 cccaggccttcaggaatcagg 65554

>gb|AC068338.14| Homo sapiens chromosome 15, clone RP11-817O13, complete sequence
          Length = 174192

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   cccaggccttcaggaatcagg 229
             |||||||||||||||||||||
Sbjct: 46666 cccaggccttcaggaatcagg 46686

>gb|AC104758.12| Homo sapiens chromosome 15, clone RP11-114H24, complete sequence
          Length = 175763

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   cccaggccttcaggaatcagg 229
             |||||||||||||||||||||
Sbjct: 97374 cccaggccttcaggaatcagg 97394

>gb|AC105137.17| Homo sapiens chromosome 15, clone CTD-2562G15, complete sequence
          Length = 178059

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   cccaggccttcaggaatcagg 229
             |||||||||||||||||||||
Sbjct: 25712 cccaggccttcaggaatcagg 25692

>gb|BC067327.1| Xenopus tropicalis nucleoporin 93kDa, mRNA (cDNA clone MGC:76268
           IMAGE:5379233), complete cds
          Length = 2592

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 ccgatcccaggccttcagga 223
           ||||||||||||||||||||
Sbjct: 934 ccgatcccaggccttcagga 953

>ref|NM_213714.1| Xenopus tropicalis nucleoporin 93kDa (nup93), mRNA
          Length = 2592

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 ccgatcccaggccttcagga 223
           ||||||||||||||||||||
Sbjct: 934 ccgatcccaggccttcagga 953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,080,485
Number of Sequences: 3902068
Number of extensions: 1080485
Number of successful extensions: 21912
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21877
Number of HSP's gapped (non-prelim): 30
length of query: 231
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 209
effective length of database: 17,147,199,772
effective search space: 3583764752348
effective search space used: 3583764752348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)