ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd16d24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XDH_CALVI (P08793) Xanthine dehydrogenase (EC 1.17.1.4) (XD) 32 1.8
2HSS_RHOVI (O32323) Homospermidine synthase (EC 2.5.1.44) (HSS) 30 5.3
3SC6A8_TORMA (Q91502) Creatine transporter 29 9.0
4BAIG_EUBSP (P32369) Bile acid transporter 29 9.0

>XDH_CALVI (P08793) Xanthine dehydrogenase (EC 1.17.1.4) (XD)|
          Length = 1353

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 239  TGHRRPFLHTWL*SFLREGRAAGAKLWRYTYL*LSVEVYLSIIHVAMF 96
            TG R PFL  +  +F  EGR  G  +  Y     S+++  S++  AMF
Sbjct: 859  TGTRHPFLFKYKIAFTSEGRLTGCYIECYNNAGWSMDLSFSVLERAMF 906



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>HSS_RHOVI (O32323) Homospermidine synthase (EC 2.5.1.44) (HSS)|
          Length = 477

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 46  ITNRQXQGVAFPKPFPTNIATWMIDKYTS 132
           I  R  Q  +FPKPF   + TW ++ + S
Sbjct: 208 IAERDTQRASFPKPFDVFVNTWSVEGFVS 236



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>SC6A8_TORMA (Q91502) Creatine transporter|
          Length = 611

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 271 VCETHPGRCRRQDTDVPFFTPGSNPSLEREELLGPSCGGILIS-DSLWRYTYL 116
           +C+      R Q  DVP   PGS  +  R+     SC G  +   ++WR+ YL
Sbjct: 13  LCKEMRAPRRAQPPDVPAGEPGSRVTWSRQMDFIMSCVGFAVGLGNVWRFPYL 65



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>BAIG_EUBSP (P32369) Bile acid transporter|
          Length = 477

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 178 LLGPSCGGILISDSLWRYTYLSSMWLCL 95
           ++GP+CGG++++ + WR      MW+C+
Sbjct: 149 VVGPTCGGLIMNAAGWRV----MMWVCV 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,371,566
Number of Sequences: 219361
Number of extensions: 2112054
Number of successful extensions: 4441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4439
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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