>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score =  258 bits (130), Expect = 2e-65
 Identities = 409/500 (81%), Gaps = 3/500 (0%)
 Strand = Plus / Plus

                                                                         
Query: 40    gttacatggtcgagnaacacacgcatttctatgcttccgtatcatccacgacactaagag 99
             |||||||||||||  | |||||||||||||||||||||  |||||||| |  |||| |||
Sbjct: 22807 gttacatggtcgaata-cacacgcatttctatgcttccagatcatccaagggactaggag 22865

                                                                         
Query: 100   tgtgactgaaaacagcgctttgcgaagcggggttggcgtggcatccctcgcccgaagcca 159
              |  || ||  ||| ||||||||| ||| |||  || || ||||| |  ||||| |||||
Sbjct: 22866 cgctacggaggacaacgctttgcggagcaggg--ggagtagcatcgcgagcccgcagcca 22923

                                                                         
Query: 160   ccagtcctggagcgtggcatcctgagctggcgccggagccggcaggcgcagccaggacag 219
             |||||| ||||||||||| |||||  | ||| |||  | ||| || ||||||||||||| 
Sbjct: 22924 ccagtcgtggagcgtggcgtcctggtcgggcaccgacgacgggagacgcagccaggacat 22983

                                                                         
Query: 220   gatctcatgccaggtctgcctcgcgaatgggcatgtgagcagcaggtgccagatcgtttc 279
             |||  | |||||||||||||||||||||||||||| ||||||||||||    || | |||
Sbjct: 22984 gatgccgtgccaggtctgcctcgcgaatgggcatgcgagcagcaggtgttgcatggattc 23043

                                                                         
Query: 280   cggctcttggtcgcaaaggaggcaccgagggtggtgaggaaggccatggcgggcgagacg 339
             ||||||||  || || | |||||||||||||| |||||  ||||||||||||||||| ||
Sbjct: 23044 cggctcttcatcacataagaggcaccgagggtcgtgagtgaggccatggcgggcgaggcg 23103

                                                                         
Query: 340   ctctgcggtccagcagcggtcctagttggcgagccagtgaaagaactttactttcggcgg 399
             ||| || ||||| |||||||||| | ||||||||||||| |||||  | || ||||||||
Sbjct: 23104 ctccgcagtccaacagcggtcctggctggcgagccagtggaagaatctaaccttcggcgg 23163

                                                                         
Query: 400   cgcccagcccttccaaatcagcttccacgagtgacaggttatggatccgtggaaggtggc 459
              ||||||| |||||| ||||||||||| ||  |||| || || |||||||||||||||||
Sbjct: 23164 ggcccagctcttccatatcagcttccaggaacgacaagtgatagatccgtggaaggtggc 23223

                                                                         
Query: 460   ccggtagcatgaccgcgctgtgtagatgccattggccgtctagttccaaacgagcttgtc 519
             | ||||||| ||||  ||||||||| |||| ||||||||| | ||||| |  ||||||||
Sbjct: 23224 ctggtagcaggacctagctgtgtagctgccgttggccgtccatttccagatcagcttgtc 23283

                                 
Query: 520   cggctcgatggacagggtgg 539
              ||||||  ||| |||||||
Sbjct: 23284 tggctcgtgggagagggtgg 23303

>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  101 bits (51), Expect = 2e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                         
Query: 55    aacacacgcatttctatgcttccgtatcatccacgacactaagagtgtgactgaaaacag 114
             ||||||||| ||||||||||||| ||||||||| | ||  ||||| |  || |  | |||
Sbjct: 96774 aacacacgcgtttctatgcttccatatcatccaaggcatcaagagcgctacagggatcag 96715

                                                                        
Query: 115   cgctttgcgaagcggggttggcgtggcatccctcgcccgaagccaccagtcctggagcg 173
             ||| |||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 96714 cgccttgcgaagcgtgtgtggcgtggcatccctcgcccgaagccaccagtcctggagcg 96656

>gb|BT009446.1| Triticum aestivum clone wlmk8.pk0009.d3:fis, full insert mRNA
            sequence
          Length = 1900

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 196/245 (80%)
 Strand = Plus / Minus

                                                                        
Query: 188  ggcgccggagccggcaggcgcagccaggacaggatctcatgccaggtctgcctcgcgaat 247
            |||||||| ||||||| ||||||||| || | || ||| ||||| |||||  | | ||||
Sbjct: 1548 ggcgccggcgccggcaagcgcagccaagataagacctcctgccatgtctgtttagtgaat 1489

                                                                        
Query: 248  gggcatgtgagcagcaggtgccagatcgtttccggctcttggtcgcaaaggaggcaccga 307
            ||||||||||||| ||| |||| |||||| ||||| || || ||||| || |||||||| 
Sbjct: 1488 gggcatgtgagcatcagatgcccgatcgtctccggttcctgatcgcacagaaggcaccgc 1429

                                                                        
Query: 308  gggtggtgaggaaggccatggcgggcgagacgctctgcggtccagcagcggtcctagttg 367
            ||||| ||  | ||||||||||| ||||| | ||| |||||||| ||||| || |     
Sbjct: 1428 gggtgatgttgcaggccatggcgtgcgagtctctccgcggtccaacagcgatcttgacat 1369

                                                                        
Query: 368  gcgagccagtgaaagaactttactttcggcggcgcccagcccttccaaatcagcttccac 427
            || |||||||| ||||| || || || ||||| ||||||| | ||||||| |||||||| 
Sbjct: 1368 gccagccagtggaagaatttcaccttgggcggtgcccagctcctccaaatgagcttccag 1309

                 
Query: 428  gagtg 432
            |||||
Sbjct: 1308 gagtg 1304



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                           
Query: 43   acatggtcgagnaacacacgcatttctatgcttccgtatcatccacg 89
            ||||||||||  |||||||||||||||||||||||  ||||||||||
Sbjct: 1692 acatggtcga-aaacacacgcatttctatgcttccagatcatccacg 1647

>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 105     ctgaaaacagcgctttgcgaagc 127
               |||||||||||||||||||||||
Sbjct: 3305076 ctgaaaacagcgctttgcgaagc 3305098

>gb|AC165175.2| Zea mays clone ZMMBBb-136N21, complete sequence
          Length = 129274

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 56     acacacgcatttctatgcttcc 77
              ||||||||||||||||||||||
Sbjct: 106575 acacacgcatttctatgcttcc 106596

>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence
          Length = 111912

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 287   tggtcgcaaaggaggcaccgagggtg 312
             ||||||||||||||||| ||||||||
Sbjct: 68688 tggtcgcaaaggaggcatcgagggtg 68713

>gb|AY793903.1| Uncultured organism clone SIMO2-M13F_H01 unknown mRNA
          Length = 1052

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 512 agcttgtccggctcgatggacaggg 536
           ||||||||||| |||||||||||||
Sbjct: 111 agcttgtccgggtcgatggacaggg 87

>gb|AC169370.4| Sorghum bicolor clone SB_BBc0011I20, complete sequence
          Length = 135209

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 391    tttcggcggcgcccagcccttccaaatca 419
              |||||| ||||||||| ||||||||||||
Sbjct: 124537 tttcggtggcgcccaggccttccaaatca 124509

>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
          Length = 77136

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 275   gtttccggctcttggtcgcaaaggaggca 303
             |||||||| ||||||||||| ||||||||
Sbjct: 10972 gtttccggttcttggtcgcagaggaggca 10944

>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0048I21, complete sequence
          Length = 137650

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ggtgaggaaggccatggcgg 331
             ||||||||||||||||||||
Sbjct: 17434 ggtgaggaaggccatggcgg 17415

>ref|XM_480535.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2031

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  ggtgaggaaggccatggcgg 331
            ||||||||||||||||||||
Sbjct: 1071 ggtgaggaaggccatggcgg 1090

>ref|XM_475128.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2010

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  ggtgaggaaggccatggcgg 331
            ||||||||||||||||||||
Sbjct: 1059 ggtgaggaaggccatggcgg 1078

>ref|XM_475261.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  ggtgaggaaggccatggcgg 331
            ||||||||||||||||||||
Sbjct: 1107 ggtgaggaaggccatggcgg 1126

>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
             complete sequence
          Length = 159932

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ggtgaggaaggccatggcgg 331
             ||||||||||||||||||||
Sbjct: 46100 ggtgaggaaggccatggcgg 46081

>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09,
              complete sequence
          Length = 177374

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    ggtgaggaaggccatggcgg 331
              ||||||||||||||||||||
Sbjct: 146457 ggtgaggaaggccatggcgg 146438

>emb|AL138881.12| Human DNA sequence from clone RP11-528H16 on chromosome 6 Contains the
             5' end of a putative novel gene, complete sequence
          Length = 38809

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 301   gcaccgagggtggtgaggaaggcc 324
             |||| |||||||||||||||||||
Sbjct: 19991 gcactgagggtggtgaggaaggcc 19968

>gb|AC090696.6| Homo sapiens chromosome 15, clone RP11-595N10, complete sequence
          Length = 187350

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   gggcatgtgagcagcaggtg 267
             ||||||||||||||||||||
Sbjct: 67715 gggcatgtgagcagcaggtg 67696

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 312     ggtgaggaaggccatggcgg 331
               ||||||||||||||||||||
Sbjct: 5640379 ggtgaggaaggccatggcgg 5640360

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 312      ggtgaggaaggccatggcgg 331
                ||||||||||||||||||||
Sbjct: 20890656 ggtgaggaaggccatggcgg 20890637



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 312      ggtgaggaaggccatggcgg 331
                ||||||||||||||||||||
Sbjct: 17516295 ggtgaggaaggccatggcgg 17516276

>gb|AC093772.2| Homo sapiens BAC clone RP11-125O18 from 4, complete sequence
          Length = 175490

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     catttctatgcttccgtatc 82
              ||||||||||||||||||||
Sbjct: 152592 catttctatgcttccgtatc 152573

>gb|AC154600.3| Mus musculus BAC clone RP23-338O2 from chromosome 14, complete sequence
          Length = 173591

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 365    ttggcgagccagtgaaagaacttt 388
              ||||| ||||||||||||||||||
Sbjct: 109597 ttggctagccagtgaaagaacttt 109574

>dbj|AP005499.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0412D08
          Length = 150188

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ggtgaggaaggccatggcgg 331
             ||||||||||||||||||||
Sbjct: 95755 ggtgaggaaggccatggcgg 95736

>dbj|AP004746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0035F08
          Length = 167446

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    ggtgaggaaggccatggcgg 331
              ||||||||||||||||||||
Sbjct: 166607 ggtgaggaaggccatggcgg 166588

>dbj|AK106696.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-D06, full
            insert sequence
          Length = 2273

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  ggtgaggaaggccatggcgg 331
            ||||||||||||||||||||
Sbjct: 1140 ggtgaggaaggccatggcgg 1159

>gb|AC152941.2| Ornithorhynchus anatinus chromosome UNK clone OABb-24M14, complete
             sequence
          Length = 145914

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   gaagccaccagtcctggagc 172
             ||||||||||||||||||||
Sbjct: 90476 gaagccaccagtcctggagc 90457

>gb|U50869.1|TRU50869 Tobacco Ringspot virus RNA1 polyprotein gene, complete cds
          Length = 7514

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 301 gcaccgagggtggtgaggaaggcc 324
           ||||||||||||||| ||||||||
Sbjct: 908 gcaccgagggtggtgcggaaggcc 931


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,131,427
Number of Sequences: 3902068
Number of extensions: 3131427
Number of successful extensions: 56773
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56646
Number of HSP's gapped (non-prelim): 125
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)