ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd16d14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 182 8e-43
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 182 8e-43
3dbj|AK100924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 8e-43
4dbj|AK100912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 8e-43
5dbj|AK100855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 8e-43
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 182 8e-43
7gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosom... 46 0.12
8gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome... 46 0.12
9gb|DQ088646.1| Melanochromis vermivorus putative green sensitive... 42 1.9
10gb|DQ088652.1| Synthetic construct green sensitive visual pigmen... 42 1.9
11gb|AC129315.3| Mus musculus BAC clone RP23-407E2 from chromosome... 42 1.9
12emb|AL109750.5|HSDJ902O5 Human DNA sequence from clone RP5-902O5... 42 1.9
13gb|AF464167.1| Mus musculus protocadherin gamma gene, exon 3 and... 42 1.9
14gb|AF443871.1| Homo sapiens Ras-like GTP-binding protein (RAB27A... 42 1.9
15gb|AC018926.10|AC018926 Homo sapiens chromosome 15 clone RP11-13... 42 1.9
16gb|AC020969.2|AC020969 Mus musculus chromosome 18 clone RP23-19K... 42 1.9
17gb|AC102365.32| Mus musculus chromosome 3, clone RP23-111A11, co... 40 7.7
18gb|AC148208.3| Callicebus moloch clone LB5-47E22, complete sequence 40 7.7
19gb|AC127257.3| Mus musculus BAC clone RP24-296O9 from chromosome... 40 7.7
20gb|AC115122.4| Mus musculus BAC clone RP24-108L20 from chromosom... 40 7.7
21gb|AC006149.3| Homo sapiens PAC clone RP5-1078A23 from 7, comple... 40 7.7
22emb|AL354871.12| Human DNA sequence from clone RP11-66G15 on chr... 40 7.7
23gb|AY188244.1| Cornus kousa small ribosomal protein 4 (rps4) gen... 40 7.7
24emb|AL022165.1|HS71L16 Human DNA sequence from clone RP1-71L16 o... 40 7.7
25gb|AC084855.4| Homo sapiens chromosome 15, clone CTD-3076O17, co... 40 7.7
26gb|AC120042.3| Homo sapiens chromosome 8, clone RP11-659E9, comp... 40 7.7
27gb|AC019357.7| Homo sapiens chromosome 8, clone RP11-687A13, com... 40 7.7
28gb|AC090825.5| Homo sapiens chromosome 15, clone CTD-2054N24, co... 40 7.7
29gb|AC092673.3| Homo sapiens BAC clone RP11-624A4 from 4, complet... 40 7.7
30gb|AC008919.9| Homo sapiens chromosome 5 clone CTD-2276O24, comp... 40 7.7
31gb|AC112187.2| Homo sapiens chromosome 5 clone RP11-269M20, comp... 40 7.7
32gb|AC102631.9| Mus musculus chromosome 1, clone RP23-303L3, comp... 40 7.7
33gb|AC164590.12| Mus musculus chromosome 3, clone RP23-309N14, co... 40 7.7
34gb|AC148978.3| Mus musculus BAC clone RP23-359K8 from 14, comple... 40 7.7
35gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 40 7.7
36emb|AL831770.3| Human DNA sequence from clone RP13-297M11 on chr... 40 7.7 
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score =  182 bits (92), Expect = 8e-43
 Identities = 188/220 (85%)
 Strand = Plus / Minus

                                                                          
Query: 10     gattgcttgctttctatatttaacaagcttgaaaatgaatcggacaggaatgcttttggg 69
              ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 148556 gattgcttgatttgtatatttaacaagcttgaaagtgaatcggacaggaatgcttttggc 148497

                                                                          
Query: 70     ttaacttgtaagaattggttcaaggttcgaaacattgctcgaaaatcgctaatatttcat 129
              |||||||||||||||||||| ||||||||||||||||| || |||||  |||| || |||
Sbjct: 148496 ttaacttgtaagaattggtttaaggttcgaaacattgcccggaaatcaataattttccat 148437

                                                                          
Query: 130    ttctcgtttaatgctaaagtatatgaggagcatgcccagtgccttccaaagatgttggct 189
              |  || |||||  ||||||||||| ||||||| ||| | |||||| ||||| | ||||| 
Sbjct: 148436 tgttcttttaaccctaaagtatataaggagcacgccaattgcctttcaaagttattggcc 148377

                                                      
Query: 190    cgttctccatatcttaagttgatatcccttgcggggctta 229
              || || || |||||||| ||| | ||||| || |||||||
Sbjct: 148376 cgctcaccttatcttaacttggtctccctcgctgggctta 148337



 Score =  123 bits (62), Expect = 7e-25
 Identities = 239/298 (80%)
 Strand = Plus / Minus

                                                                          
Query: 266    tttctggaacatccttggagtccctctcgttgtactcctgttctggtataacagatgatg 325
              |||||||| |||| ||| ||||||| || || |||| ||| |||||||| || |||||||
Sbjct: 148300 tttctggagcatcattgcagtccctttctttctactgctgctctggtattacggatgatg 148241

                                                                          
Query: 326    gtctagcacaagtatcagtcagatgtcctaatttggttatcgtggaactttaccgctgct 385
              || |||     || ||| || |||| ||||||||||| |   | ||||| ||||||||||
Sbjct: 148240 gtttagaggtggtctcaatcggatgccctaatttggtgagtcttgaactctaccgctgct 148181

                                                                          
Query: 386    taaatatcacagattttggtttggaaagtctttcccagggctgtcattctttgaagagtc 445
              | ||||| ||||||  ||||||||||| ||||| | ||||||| ||| ||||||||||||
Sbjct: 148180 ttaatattacagatcatggtttggaaaatctttgcaagggctgccatgctttgaagagtc 148121

                                                                          
Query: 446    ttaaccttggttactgcacaggcatttcagatcgagggattagttcaatcctaaggaatt 505
              ||||||| ||||||||   || ||||||||||| |||||||  | ||||| | |||||||
Sbjct: 148120 ttaacctgggttactgtgtagccatttcagatcaagggattgctgcaatctttaggaatt 148061

                                                                        
Query: 506    gccgaaacatttgtgcactcatcatatcacattgcagaggtgtgtctggtgttggatt 563
              |||  || ||||   || | |||||| || ||||||||||| | || |||||||||||
Sbjct: 148060 gcccgaatatttccacaattatcatagcatattgcagaggtttatccggtgttggatt 148003
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  182 bits (92), Expect = 8e-43
 Identities = 188/220 (85%)
 Strand = Plus / Plus

                                                                           
Query: 10      gattgcttgctttctatatttaacaagcttgaaaatgaatcggacaggaatgcttttggg 69
               ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 8869671 gattgcttgatttgtatatttaacaagcttgaaagtgaatcggacaggaatgcttttggc 8869730

                                                                           
Query: 70      ttaacttgtaagaattggttcaaggttcgaaacattgctcgaaaatcgctaatatttcat 129
               |||||||||||||||||||| ||||||||||||||||| || |||||  |||| || |||
Sbjct: 8869731 ttaacttgtaagaattggtttaaggttcgaaacattgcccggaaatcaataattttccat 8869790

                                                                           
Query: 130     ttctcgtttaatgctaaagtatatgaggagcatgcccagtgccttccaaagatgttggct 189
               |  || |||||  ||||||||||| ||||||| ||| | |||||| ||||| | ||||| 
Sbjct: 8869791 tgttcttttaaccctaaagtatataaggagcacgccaattgcctttcaaagttattggcc 8869850

                                                       
Query: 190     cgttctccatatcttaagttgatatcccttgcggggctta 229
               || || || |||||||| ||| | ||||| || |||||||
Sbjct: 8869851 cgctcaccttatcttaacttggtctccctcgctgggctta 8869890



 Score =  123 bits (62), Expect = 7e-25
 Identities = 239/298 (80%)
 Strand = Plus / Plus

                                                                           
Query: 266     tttctggaacatccttggagtccctctcgttgtactcctgttctggtataacagatgatg 325
               |||||||| |||| ||| ||||||| || || |||| ||| |||||||| || |||||||
Sbjct: 8869927 tttctggagcatcattgcagtccctttctttctactgctgctctggtattacggatgatg 8869986

                                                                           
Query: 326     gtctagcacaagtatcagtcagatgtcctaatttggttatcgtggaactttaccgctgct 385
               || |||     || ||| || |||| ||||||||||| |   | ||||| ||||||||||
Sbjct: 8869987 gtttagaggtggtctcaatcggatgccctaatttggtgagtcttgaactctaccgctgct 8870046

                                                                           
Query: 386     taaatatcacagattttggtttggaaagtctttcccagggctgtcattctttgaagagtc 445
               | ||||| ||||||  ||||||||||| ||||| | ||||||| ||| ||||||||||||
Sbjct: 8870047 ttaatattacagatcatggtttggaaaatctttgcaagggctgccatgctttgaagagtc 8870106

                                                                           
Query: 446     ttaaccttggttactgcacaggcatttcagatcgagggattagttcaatcctaaggaatt 505
               ||||||| ||||||||   || ||||||||||| |||||||  | ||||| | |||||||
Sbjct: 8870107 ttaacctgggttactgtgtagccatttcagatcaagggattgctgcaatctttaggaatt 8870166

                                                                         
Query: 506     gccgaaacatttgtgcactcatcatatcacattgcagaggtgtgtctggtgttggatt 563
               |||  || ||||   || | |||||| || ||||||||||| | || |||||||||||
Sbjct: 8870167 gcccgaatatttccacaattatcatagcatattgcagaggtttatccggtgttggatt 8870224
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>dbj|AK100924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134E03, full
           insert sequence
          Length = 2249

 Score =  182 bits (92), Expect = 8e-43
 Identities = 188/220 (85%)
 Strand = Plus / Plus

                                                                       
Query: 10  gattgcttgctttctatatttaacaagcttgaaaatgaatcggacaggaatgcttttggg 69
           ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 617 gattgcttgatttgtatatttaacaagcttgaaagtgaatcggacaggaatgcttttggc 676

                                                                       
Query: 70  ttaacttgtaagaattggttcaaggttcgaaacattgctcgaaaatcgctaatatttcat 129
           |||||||||||||||||||| ||||||||||||||||| || |||||  |||| || |||
Sbjct: 677 ttaacttgtaagaattggtttaaggttcgaaacattgcccggaaatcaataattttccat 736

                                                                       
Query: 130 ttctcgtttaatgctaaagtatatgaggagcatgcccagtgccttccaaagatgttggct 189
           |  || |||||  ||||||||||| ||||||| ||| | |||||| ||||| | ||||| 
Sbjct: 737 tgttcttttaaccctaaagtatataaggagcacgccaattgcctttcaaagttattggcc 796

                                                   
Query: 190 cgttctccatatcttaagttgatatcccttgcggggctta 229
           || || || |||||||| ||| | ||||| || |||||||
Sbjct: 797 cgctcaccttatcttaacttggtctccctcgctgggctta 836



 Score =  123 bits (62), Expect = 7e-25
 Identities = 239/298 (80%)
 Strand = Plus / Plus

                                                                        
Query: 266  tttctggaacatccttggagtccctctcgttgtactcctgttctggtataacagatgatg 325
            |||||||| |||| ||| ||||||| || || |||| ||| |||||||| || |||||||
Sbjct: 873  tttctggagcatcattgcagtccctttctttctactgctgctctggtattacggatgatg 932

                                                                        
Query: 326  gtctagcacaagtatcagtcagatgtcctaatttggttatcgtggaactttaccgctgct 385
            || |||     || ||| || |||| ||||||||||| |   | ||||| ||||||||||
Sbjct: 933  gtttagaggtggtctcaatcggatgccctaatttggtgagtcttgaactctaccgctgct 992

                                                                        
Query: 386  taaatatcacagattttggtttggaaagtctttcccagggctgtcattctttgaagagtc 445
            | ||||| ||||||  ||||||||||| ||||| | ||||||| ||| ||||||||||||
Sbjct: 993  ttaatattacagatcatggtttggaaaatctttgcaagggctgccatgctttgaagagtc 1052

                                                                        
Query: 446  ttaaccttggttactgcacaggcatttcagatcgagggattagttcaatcctaaggaatt 505
            ||||||| ||||||||   || ||||||||||| |||||||  | ||||| | |||||||
Sbjct: 1053 ttaacctgggttactgtgtagccatttcagatcaagggattgctgcaatctttaggaatt 1112

                                                                      
Query: 506  gccgaaacatttgtgcactcatcatatcacattgcagaggtgtgtctggtgttggatt 563
            |||  || ||||   || | |||||| || ||||||||||| | || |||||||||||
Sbjct: 1113 gcccgaatatttccacaattatcatagcatattgcagaggtttatccggtgttggatt 1170
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>dbj|AK100912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132O20, full
           insert sequence
          Length = 2249

 Score =  182 bits (92), Expect = 8e-43
 Identities = 188/220 (85%)
 Strand = Plus / Plus

                                                                       
Query: 10  gattgcttgctttctatatttaacaagcttgaaaatgaatcggacaggaatgcttttggg 69
           ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 617 gattgcttgatttgtatatttaacaagcttgaaagtgaatcggacaggaatgcttttggc 676

                                                                       
Query: 70  ttaacttgtaagaattggttcaaggttcgaaacattgctcgaaaatcgctaatatttcat 129
           |||||||||||||||||||| ||||||||||||||||| || |||||  |||| || |||
Sbjct: 677 ttaacttgtaagaattggtttaaggttcgaaacattgcccggaaatcaataattttccat 736

                                                                       
Query: 130 ttctcgtttaatgctaaagtatatgaggagcatgcccagtgccttccaaagatgttggct 189
           |  || |||||  ||||||||||| ||||||| ||| | |||||| ||||| | ||||| 
Sbjct: 737 tgttcttttaaccctaaagtatataaggagcacgccaattgcctttcaaagttattggcc 796

                                                   
Query: 190 cgttctccatatcttaagttgatatcccttgcggggctta 229
           || || || |||||||| ||| | ||||| || |||||||
Sbjct: 797 cgctcaccttatcttaacttggtctccctcgctgggctta 836



 Score =  123 bits (62), Expect = 7e-25
 Identities = 239/298 (80%)
 Strand = Plus / Plus

                                                                        
Query: 266  tttctggaacatccttggagtccctctcgttgtactcctgttctggtataacagatgatg 325
            |||||||| |||| ||| ||||||| || || |||| ||| |||||||| || |||||||
Sbjct: 873  tttctggagcatcattgcagtccctttctttctactgctgctctggtattacggatgatg 932

                                                                        
Query: 326  gtctagcacaagtatcagtcagatgtcctaatttggttatcgtggaactttaccgctgct 385
            || |||     || ||| || |||| ||||||||||| |   | ||||| ||||||||||
Sbjct: 933  gtttagaggtggtctcaatcggatgccctaatttggtgagtcttgaactctaccgctgct 992

                                                                        
Query: 386  taaatatcacagattttggtttggaaagtctttcccagggctgtcattctttgaagagtc 445
            | ||||| ||||||  ||||||||||| ||||| | ||||||| ||| ||||||||||||
Sbjct: 993  ttaatattacagatcatggtttggaaaatctttgcaagggctgccatgctttgaagagtc 1052

                                                                        
Query: 446  ttaaccttggttactgcacaggcatttcagatcgagggattagttcaatcctaaggaatt 505
            ||||||| ||||||||   || ||||||||||| |||||||  | ||||| | |||||||
Sbjct: 1053 ttaacctgggttactgtgtagccatttcagatcaagggattgctgcaatctttaggaatt 1112

                                                                      
Query: 506  gccgaaacatttgtgcactcatcatatcacattgcagaggtgtgtctggtgttggatt 563
            |||  || ||||   || | |||||| || ||||||||||| | || |||||||||||
Sbjct: 1113 gcccgaatatttccacaattatcatagcatattgcagaggtttatccggtgttggatt 1170
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>dbj|AK100855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123K21, full
           insert sequence
          Length = 1209

 Score =  182 bits (92), Expect = 8e-43
 Identities = 188/220 (85%)
 Strand = Plus / Plus

                                                                       
Query: 10  gattgcttgctttctatatttaacaagcttgaaaatgaatcggacaggaatgcttttggg 69
           ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 618 gattgcttgatttgtatatttaacaagcttgaaagtgaatcggacaggaatgcttttggc 677

                                                                       
Query: 70  ttaacttgtaagaattggttcaaggttcgaaacattgctcgaaaatcgctaatatttcat 129
           |||||||||||||||||||| ||||||||||||||||| || |||||  |||| || |||
Sbjct: 678 ttaacttgtaagaattggtttaaggttcgaaacattgcccggaaatcaataattttccat 737

                                                                       
Query: 130 ttctcgtttaatgctaaagtatatgaggagcatgcccagtgccttccaaagatgttggct 189
           |  || |||||  ||||||||||| ||||||| ||| | |||||| ||||| | ||||| 
Sbjct: 738 tgttcttttaaccctaaagtatataaggagcacgccaattgcctttcaaagttattggcc 797

                                                   
Query: 190 cgttctccatatcttaagttgatatcccttgcggggctta 229
           || || || |||||||| ||| | ||||| || |||||||
Sbjct: 798 cgctcaccttatcttaacttggtctccctcgctgggctta 837



 Score =  123 bits (62), Expect = 7e-25
 Identities = 239/298 (80%)
 Strand = Plus / Plus

                                                                        
Query: 266  tttctggaacatccttggagtccctctcgttgtactcctgttctggtataacagatgatg 325
            |||||||| |||| ||| ||||||| || || |||| ||| |||||||| || |||||||
Sbjct: 874  tttctggagcatcattgcagtccctttctttctactgctgctctggtattacggatgatg 933

                                                                        
Query: 326  gtctagcacaagtatcagtcagatgtcctaatttggttatcgtggaactttaccgctgct 385
            || |||     || ||| || |||| ||||||||||| |   | ||||| ||||||||||
Sbjct: 934  gtttagaggtggtctcaatcggatgccctaatttggtgagtcttgaactctaccgctgct 993

                                                                        
Query: 386  taaatatcacagattttggtttggaaagtctttcccagggctgtcattctttgaagagtc 445
            | ||||| ||||||  ||||||||||| ||||| | ||||||| ||| ||||||||||||
Sbjct: 994  ttaatattacagatcatggtttggaaaatctttgcaagggctgccatgctttgaagagtc 1053

                                                                        
Query: 446  ttaaccttggttactgcacaggcatttcagatcgagggattagttcaatcctaaggaatt 505
            ||||||| ||||||||   || ||||||||||| |||||||  | ||||| | |||||||
Sbjct: 1054 ttaacctgggttactgtgtagccatttcagatcaagggattgctgcaatctttaggaatt 1113

                                                                      
Query: 506  gccgaaacatttgtgcactcatcatatcacattgcagaggtgtgtctggtgttggatt 563
            |||  || ||||   || | |||||| || ||||||||||| | || |||||||||||
Sbjct: 1114 gcccgaatatttccacaattatcatagcatattgcagaggtttatccggtgttggatt 1171
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  182 bits (92), Expect = 8e-43
 Identities = 188/220 (85%)
 Strand = Plus / Plus

                                                                           
Query: 10      gattgcttgctttctatatttaacaagcttgaaaatgaatcggacaggaatgcttttggg 69
               ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 8941334 gattgcttgatttgtatatttaacaagcttgaaagtgaatcggacaggaatgcttttggc 8941393

                                                                           
Query: 70      ttaacttgtaagaattggttcaaggttcgaaacattgctcgaaaatcgctaatatttcat 129
               |||||||||||||||||||| ||||||||||||||||| || |||||  |||| || |||
Sbjct: 8941394 ttaacttgtaagaattggtttaaggttcgaaacattgcccggaaatcaataattttccat 8941453

                                                                           
Query: 130     ttctcgtttaatgctaaagtatatgaggagcatgcccagtgccttccaaagatgttggct 189
               |  || |||||  ||||||||||| ||||||| ||| | |||||| ||||| | ||||| 
Sbjct: 8941454 tgttcttttaaccctaaagtatataaggagcacgccaattgcctttcaaagttattggcc 8941513

                                                       
Query: 190     cgttctccatatcttaagttgatatcccttgcggggctta 229
               || || || |||||||| ||| | ||||| || |||||||
Sbjct: 8941514 cgctcaccttatcttaacttggtctccctcgctgggctta 8941553



 Score =  123 bits (62), Expect = 7e-25
 Identities = 239/298 (80%)
 Strand = Plus / Plus

                                                                           
Query: 266     tttctggaacatccttggagtccctctcgttgtactcctgttctggtataacagatgatg 325
               |||||||| |||| ||| ||||||| || || |||| ||| |||||||| || |||||||
Sbjct: 8941590 tttctggagcatcattgcagtccctttctttctactgctgctctggtattacggatgatg 8941649

                                                                           
Query: 326     gtctagcacaagtatcagtcagatgtcctaatttggttatcgtggaactttaccgctgct 385
               || |||     || ||| || |||| ||||||||||| |   | ||||| ||||||||||
Sbjct: 8941650 gtttagaggtggtctcaatcggatgccctaatttggtgagtcttgaactctaccgctgct 8941709

                                                                           
Query: 386     taaatatcacagattttggtttggaaagtctttcccagggctgtcattctttgaagagtc 445
               | ||||| ||||||  ||||||||||| ||||| | ||||||| ||| ||||||||||||
Sbjct: 8941710 ttaatattacagatcatggtttggaaaatctttgcaagggctgccatgctttgaagagtc 8941769

                                                                           
Query: 446     ttaaccttggttactgcacaggcatttcagatcgagggattagttcaatcctaaggaatt 505
               ||||||| ||||||||   || ||||||||||| |||||||  | ||||| | |||||||
Sbjct: 8941770 ttaacctgggttactgtgtagccatttcagatcaagggattgctgcaatctttaggaatt 8941829

                                                                         
Query: 506     gccgaaacatttgtgcactcatcatatcacattgcagaggtgtgtctggtgttggatt 563
               |||  || ||||   || | |||||| || ||||||||||| | || |||||||||||
Sbjct: 8941830 gcccgaatatttccacaattatcatagcatattgcagaggtttatccggtgttggatt 8941887
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>gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosome 10, complete sequence
          Length = 210846

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 68     ggttaacttgtaagaattggttc 90
              |||||||||||||||||||||||
Sbjct: 113051 ggttaacttgtaagaattggttc 113073
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>gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome 10, complete sequence
          Length = 185398

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 68    ggttaacttgtaagaattggttc 90
             |||||||||||||||||||||||
Sbjct: 38802 ggttaacttgtaagaattggttc 38824
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>gb|DQ088646.1| Melanochromis vermivorus putative green sensitive visual pigment
           gene, complete cds
          Length = 2036

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 10  gattgcttgctttctatattt 30
           |||||||||||||||||||||
Sbjct: 137 gattgcttgctttctatattt 157
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>gb|DQ088652.1| Synthetic construct green sensitive visual pigment RH2B gene,
           complete cds
          Length = 1104

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 10  gattgcttgctttctatattt 30
           |||||||||||||||||||||
Sbjct: 137 gattgcttgctttctatattt 157
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>gb|AC129315.3| Mus musculus BAC clone RP23-407E2 from chromosome 18, complete sequence
          Length = 183462

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 164   cccagtgccttccaaagatgttggc 188
             ||||||||||||||||| |||||||
Sbjct: 38863 cccagtgccttccaaaggtgttggc 38887
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>emb|AL109750.5|HSDJ902O5 Human DNA sequence from clone RP5-902O5 on chromosome Xq21.31-22.3
             Contains a CpG island, complete sequence
          Length = 74587

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    atttaacaagcttgaaaatga 47
             |||||||||||||||||||||
Sbjct: 45559 atttaacaagcttgaaaatga 45579
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>gb|AF464167.1| Mus musculus protocadherin gamma gene, exon 3 and partial cds
          Length = 6440

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 164  cccagtgccttccaaagatgttggc 188
            ||||||||||||||||| |||||||
Sbjct: 5024 cccagtgccttccaaaggtgttggc 5048
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>gb|AF443871.1| Homo sapiens Ras-like GTP-binding protein (RAB27A) gene, complete cds
          Length = 68639

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 395   cagattttggtttggaaagtc 415
             |||||||||||||||||||||
Sbjct: 16730 cagattttggtttggaaagtc 16750
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>gb|AC018926.10|AC018926 Homo sapiens chromosome 15 clone RP11-139H15 map 15q21.3, complete
             sequence
          Length = 158033

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 395   cagattttggtttggaaagtc 415
             |||||||||||||||||||||
Sbjct: 26898 cagattttggtttggaaagtc 26878
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>gb|AC020969.2|AC020969 Mus musculus chromosome 18 clone RP23-19K11, complete sequence
          Length = 179771

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 164    cccagtgccttccaaagatgttggc 188
              ||||||||||||||||| |||||||
Sbjct: 110925 cccagtgccttccaaaggtgttggc 110901
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>gb|AC102365.32| Mus musculus chromosome 3, clone RP23-111A11, complete sequence
          Length = 208259

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   agcatgcccagtgccttcca 177
             ||||||||||||||||||||
Sbjct: 97717 agcatgcccagtgccttcca 97698
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>gb|AC148208.3| Callicebus moloch clone LB5-47E22, complete sequence
          Length = 95449

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 530   tatcacattgcagaggtgtgtctg 553
             |||||||||||||||||| |||||
Sbjct: 64692 tatcacattgcagaggtgagtctg 64715
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>gb|AC127257.3| Mus musculus BAC clone RP24-296O9 from chromosome 3, complete sequence
          Length = 166030

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    agcatgcccagtgccttcca 177
              ||||||||||||||||||||
Sbjct: 143681 agcatgcccagtgccttcca 143700
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>gb|AC115122.4| Mus musculus BAC clone RP24-108L20 from chromosome 14, complete
             sequence
          Length = 163480

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   ttcccagggctgtcattctt 436
             ||||||||||||||||||||
Sbjct: 28958 ttcccagggctgtcattctt 28939
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>gb|AC006149.3| Homo sapiens PAC clone RP5-1078A23 from 7, complete sequence
          Length = 72010

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   aaatatcacagattttggtt 406
             ||||||||||||||||||||
Sbjct: 32916 aaatatcacagattttggtt 32935
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>emb|AL354871.12| Human DNA sequence from clone RP11-66G15 on chromosome 13, complete
             sequence
          Length = 96159

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttgctttctatatttaacaa 35
             ||||||||||||||||||||
Sbjct: 85843 ttgctttctatatttaacaa 85824
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>gb|AY188244.1| Cornus kousa small ribosomal protein 4 (rps4) gene, partial cds;
           chloroplast gene for chloroplast product
          Length = 557

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 499 aggaattgccgaaacatttg 518
           ||||||||||||||||||||
Sbjct: 424 aggaattgccgaaacatttg 443
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>emb|AL022165.1|HS71L16 Human DNA sequence from clone RP1-71L16 on chromosome Xp11 Contains a
              pseudogene similar to part of novel gene (FLJ20344), a
              novel gene, the CHST7 gene for carbohydrate
              (N-acetylglucosamine 6-O) ulfotransferase 7 (C6ST-2), the
              3' end of the SLC9A7 gene for solute carrier family 9
              (sodium/hydrogen exchanger), isoform 7 (NHE7), a pseudogene
              similar to part of germ cell specific Y-box binding protein
              (YBX2) and two CpG islands, complete sequence
          Length = 176433

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     acttgtaagaattggttcaa 92
              ||||||||||||||||||||
Sbjct: 149281 acttgtaagaattggttcaa 149300
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>gb|AC084855.4| Homo sapiens chromosome 15, clone CTD-3076O17, complete sequence
          Length = 180944

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ttgctttctatatttaacaa 35
             ||||||||||||||||||||
Sbjct: 11353 ttgctttctatatttaacaa 11372
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>gb|AC120042.3| Homo sapiens chromosome 8, clone RP11-659E9, complete sequence
          Length = 170940

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   cagatgtcctaatttggtta 364
             ||||||||||||||||||||
Sbjct: 13445 cagatgtcctaatttggtta 13464
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>gb|AC019357.7| Homo sapiens chromosome 8, clone RP11-687A13, complete sequence
          Length = 181694

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   cagatgtcctaatttggtta 364
             ||||||||||||||||||||
Sbjct: 66643 cagatgtcctaatttggtta 66662
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>gb|AC090825.5| Homo sapiens chromosome 15, clone CTD-2054N24, complete sequence
          Length = 170507

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     ttgctttctatatttaacaa 35
              ||||||||||||||||||||
Sbjct: 148774 ttgctttctatatttaacaa 148793
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>gb|AC092673.3| Homo sapiens BAC clone RP11-624A4 from 4, complete sequence
          Length = 166339

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   attagttcaatcctaaggaa 503
             ||||||||||||||||||||
Sbjct: 29193 attagttcaatcctaaggaa 29174
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>gb|AC008919.9| Homo sapiens chromosome 5 clone CTD-2276O24, complete sequence
          Length = 106689

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   tttaatgctaaagtatatga 155
             ||||||||||||||||||||
Sbjct: 22421 tttaatgctaaagtatatga 22402
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>gb|AC112187.2| Homo sapiens chromosome 5 clone RP11-269M20, complete sequence
          Length = 186165

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    tttaatgctaaagtatatga 155
              ||||||||||||||||||||
Sbjct: 176103 tttaatgctaaagtatatga 176084
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>gb|AC102631.9| Mus musculus chromosome 1, clone RP23-303L3, complete sequence
          Length = 228551

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    ttcccagggctgtcattctt 436
              ||||||||||||||||||||
Sbjct: 125111 ttcccagggctgtcattctt 125130
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>gb|AC164590.12| Mus musculus chromosome 3, clone RP23-309N14, complete sequence
          Length = 206984

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    agcatgcccagtgccttcca 177
              ||||||||||||||||||||
Sbjct: 129160 agcatgcccagtgccttcca 129141
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>gb|AC148978.3| Mus musculus BAC clone RP23-359K8 from 14, complete sequence
          Length = 241799

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    ttcccagggctgtcattctt 436
              ||||||||||||||||||||
Sbjct: 115934 ttcccagggctgtcattctt 115915
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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 530     tatcacattgcagaggtgtgtctg 553
               |||||||||||||||||| |||||
Sbjct: 1711616 tatcacattgcagaggtgagtctg 1711639
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>emb|AL831770.3| Human DNA sequence from clone RP13-297M11 on chromosome 1, complete
             sequence
          Length = 151857

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   tttaatgctaaagtatatga 155
             ||||||||||||||||||||
Sbjct: 81980 tttaatgctaaagtatatga 81999


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,899,138
Number of Sequences: 3902068
Number of extensions: 4899138
Number of successful extensions: 82434
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82297
Number of HSP's gapped (non-prelim): 131
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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