>emb|AJ634003.1| Schedonorus arundinaceus mRNA for putative mitogen-activated protein
            kinase (mapk gene)
          Length = 1470

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 80/89 (89%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                        
Query: 23   atggtgaatatgtgacaagcaggnaatgaacatgtgacagcagtgtgccacaccagggtc 82
            ||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||| ||
Sbjct: 1100 atggtgaatatgtgacaagcagg-aatgaacatgtgagagcagtatgccgcaccaggctc 1158

                                         
Query: 83   ttcacatgttcgttcttggtttaaatctt 111
            ||| |||||||||| || || ||||||||
Sbjct: 1159 ttcgcatgttcgttttttgtataaatctt 1187



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 86/101 (85%), Gaps = 2/101 (1%)
 Strand = Plus / Plus

                                                                        
Query: 151  gtaaatatgtgcacaataaacg-gcgtatggatttctctagctgtgggtcagtacttggt 209
            |||||||| |||||||||| |  |||||||||||| ||| ||| ||| ||| |||||| |
Sbjct: 1236 gtaaatatttgcacaataagccagcgtatggatttttctggctatggatcactacttg-t 1294

                                                     
Query: 210  agtatatatggactactgtattgtagaagcggagttcagtt 250
            ||||||||||   |||||| ||||||||||||| |||||||
Sbjct: 1295 agtatatatgttgtactgtgttgtagaagcggaattcagtt 1335



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 45/51 (88%), Gaps = 2/51 (3%)
 Strand = Plus / Plus

                                                               
Query: 406  tgtgtaagttgtaatcttctctttt--ccctctgtaagttgtaattttaga 454
            |||||||||||||||||| ||||||   ||| ||||||||||||| |||||
Sbjct: 1346 tgtgtaagttgtaatcttttctttttaacctgtgtaagttgtaatcttaga 1396



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 57/66 (86%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                        
Query: 276  cttgtgtaagttgtaatcttct-tttttcccctgattgtaagttgtaattctagacgctg 334
            |||||||||||||||||||| | |||||  ||||  |||||||||||||  |||||||| 
Sbjct: 1344 cttgtgtaagttgtaatcttttctttttaacctg--tgtaagttgtaatcttagacgctc 1401

                  
Query: 335  ctctat 340
            ||||||
Sbjct: 1402 ctctat 1407



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 404  cctgtgtaagttgtaatctt 423
            ||||||||||||||||||||
Sbjct: 1374 cctgtgtaagttgtaatctt 1393

>gb|AC129022.5| Mus musculus BAC clone RP23-318P2 from chromosome 12, complete sequence
          Length = 206083

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 430   tccctctgtaagttgtaattttagaa 455
             |||||||||||||| |||||||||||
Sbjct: 85652 tccctctgtaagttataattttagaa 85627

>emb|BX470150.13| Zebrafish DNA sequence from clone DKEY-164K14 in linkage group 23,
              complete sequence
          Length = 209342

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 67     gtgccacaccagggtcttcacatgtt 92
              |||||||||||| |||||||||||||
Sbjct: 153553 gtgccacaccagagtcttcacatgtt 153578

>gb|AC012174.5| Homo sapiens chromosome 16 clone RP11-157H19, complete sequence
          Length = 168154

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 480   actattaagtgaccatgtttacttc 504
             |||||||||||||||| ||||||||
Sbjct: 32308 actattaagtgaccatttttacttc 32284

>gb|AC040161.5| Homo sapiens chromosome 16 clone CTC-420A11, complete sequence
          Length = 155279

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 480   actattaagtgaccatgtttacttc 504
             |||||||||||||||| ||||||||
Sbjct: 36483 actattaagtgaccatttttacttc 36507

>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 291   atcttcttttttcccctgatt 311
             |||||||||||||||||||||
Sbjct: 27763 atcttcttttttcccctgatt 27783

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     tttaaatctttaatgcaatt 121
               ||||||||||||||||||||
Sbjct: 1613662 tttaaatctttaatgcaatt 1613681

>ref|XM_585790.2| PREDICTED: Bos taurus hypothetical LOC508934 (LOC508934), mRNA
          Length = 1057

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  tggtttaaatctttaatgca 118
           ||||||||||||||||||||
Sbjct: 348 tggtttaaatctttaatgca 329

>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     tttaaatctttaatgcaatt 121
               ||||||||||||||||||||
Sbjct: 1599290 tttaaatctttaatgcaatt 1599309

>emb|AL109920.15|HSDJ335E1 Human DNA sequence from clone RP3-335E1 on chromosome 6q16.2-21
             Contains a CpG island, complete sequence
          Length = 143805

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 478   aaactattaagtgaccatgtttac 501
             ||||| ||||||||||||||||||
Sbjct: 65282 aaactgttaagtgaccatgtttac 65305

>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     tttaaatctttaatgcaatt 121
               ||||||||||||||||||||
Sbjct: 1602980 tttaaatctttaatgcaatt 1602999

>gb|AC107878.2| Homo sapiens chromosome 18, clone RP11-138C8, complete sequence
          Length = 182375

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   atcttctcttttccctctgt 438
             ||||||||||||||||||||
Sbjct: 71681 atcttctcttttccctctgt 71700

>gb|AC161265.2| Mus musculus BAC clone RP23-271F18 from chromosome 9, complete sequence
          Length = 203839

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   cttttccctctgtaagttgt 445
             ||||||||||||||||||||
Sbjct: 92622 cttttccctctgtaagttgt 92641

>gb|AC008446.5| Homo sapiens chromosome 5 clone CTC-340A15, complete sequence
          Length = 152232

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   ttaaatctttaatgcaatta 122
             ||||||||||||||||||||
Sbjct: 65198 ttaaatctttaatgcaatta 65217

>gb|AC025182.4| Homo sapiens chromosome 5 clone CTD-2192A1, complete sequence
          Length = 109069

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   tatatatgggggtctaaact 482
             ||||||||||||||||||||
Sbjct: 89334 tatatatgggggtctaaact 89315

>gb|AC106900.3| Homo sapiens BAC clone RP11-796E10 from 2, complete sequence
          Length = 149495

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  taaatatgtgcacaataaac 171
            ||||||||||||||||||||
Sbjct: 7679 taaatatgtgcacaataaac 7660

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     tttaaatctttaatgcaatt 121
               ||||||||||||||||||||
Sbjct: 1653299 tttaaatctttaatgcaatt 1653318

>gb|AC113174.3| Homo sapiens chromosome 1 clone RP11-397A15, complete sequence
          Length = 175470

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   tcttcttttttcccctgatt 311
             ||||||||||||||||||||
Sbjct: 80352 tcttcttttttcccctgatt 80371

>gb|AC155253.1| Mus musculus BAC clone RP24-172G9 from 17, complete sequence
          Length = 160193

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ggtagtatatatggactact 226
              ||||||||||||||||||||
Sbjct: 154889 ggtagtatatatggactact 154908

>emb|AL132801.5|CNS01DTN Human chromosome 14 DNA sequence BAC R-661D19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168624

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    aagcttgtgtaagttgtaat 292
              ||||||||||||||||||||
Sbjct: 143354 aagcttgtgtaagttgtaat 143335

>emb|CT030652.14| Mouse DNA sequence from clone RP23-48G20 on chromosome 17, complete
             sequence
          Length = 221351

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ggtagtatatatggactact 226
             ||||||||||||||||||||
Sbjct: 96639 ggtagtatatatggactact 96658

>gb|AC163711.3| Gallus gallus BAC clone CH261-27J21 from chromosome ul, complete sequence
          Length = 232951

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 49     tgaacatgtgacagcagtgtgcca 72
              |||||||| |||||||||||||||
Sbjct: 206941 tgaacatgagacagcagtgtgcca 206964

>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 102     tttaaatctttaatgcaatt 121
               ||||||||||||||||||||
Sbjct: 1963284 tttaaatctttaatgcaatt 1963265

>gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, complete sequence
          Length = 200656

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tttaaatctttaatgcaatt 121
             ||||||||||||||||||||
Sbjct: 53735 tttaaatctttaatgcaatt 53754

>emb|AL929147.7| Mouse DNA sequence from clone RP23-429P18 on chromosome 2, complete
              sequence
          Length = 155602

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    taaatctttaatgcaattat 123
              ||||||||||||||||||||
Sbjct: 130987 taaatctttaatgcaattat 131006

>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     tttaaatctttaatgcaatt 121
               ||||||||||||||||||||
Sbjct: 2125188 tttaaatctttaatgcaatt 2125207

>gb|AC162179.2| Mus musculus BAC clone RP23-197K11 from chromosome 9, complete
            sequence
          Length = 210741

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  cttttccctctgtaagttgt 445
            ||||||||||||||||||||
Sbjct: 6437 cttttccctctgtaagttgt 6456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,894,182
Number of Sequences: 3902068
Number of extensions: 4894182
Number of successful extensions: 88503
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88342
Number of HSP's gapped (non-prelim): 156
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)