ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd16c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GTHB1_ICTPU (Q9DG81) Gonadotropin beta-1 subunit precursor (Gona... 29 6.8
2NO12B_MEDSA (Q40339) Early nodulin 12B precursor (N-12B) 28 8.9

>GTHB1_ICTPU (Q9DG81) Gonadotropin beta-1 subunit precursor (Gonadotropin beta-I|
           chain) (GTH-I-beta) (GTH beta-1)
          Length = 132

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 361 IISSLLVWNGSDCKAKVILSQLSL 432
           ++  +LVW GS+CKA+  L+ +S+
Sbjct: 9   LLLPMLVWAGSECKARCCLTNISI 32



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>NO12B_MEDSA (Q40339) Early nodulin 12B precursor (N-12B)|
          Length = 113

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 356 PWNHPTRISQKIQTPPTKRPPHNQHLPA 273
           P N P +    +  PP K PP ++H PA
Sbjct: 80  PVNKPPQKESPVHKPPRKEPPTHKHPPA 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,418,238
Number of Sequences: 219361
Number of extensions: 757119
Number of successful extensions: 2516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2513
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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