>VE2_BPV6 (Q705F3) Regulatory protein E2|
          Length = 435

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = -1

Query: 309 SP*LDSPVHLQTLQGSIEDE-DTRRGRGRQSSARWRRWTVGRRMKRSKARGGEGKRHRTP 133
           SP   +PV  +    S  D   +RRG   QS +R R     R   RS++  G   R R P
Sbjct: 225 SPGHKAPVTSRRRHSSSSDSHSSRRGSRPQSLSRSR----SRSRSRSRSPSGSHARQRAP 280

Query: 132 SDAG*MRSPTKDAGWMEGVPRRLGRLDGGRASG 34
            D+G  +SP +  G       R G   GGR  G
Sbjct: 281 QDSGTNKSPGRQGG-------RRGDGGGGRGGG 306

>REXO4_CRYNE (Q5KJQ4) RNA exonuclease 4 (EC 3.1.-.-)|
          Length = 408

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = -3

Query: 253 RGHSTREREAELGQVAALDGGTEDEEVEGARWGREAAPDAERCRLDAESD-----EGCRL 89
           RGH   E+EAE G+  A +   ++ +  G   GR+  P   R  + +  D      G R+
Sbjct: 317 RGHD--EKEAEDGEETAGESKRKNRKKSGNGGGRQQFPGGGRKGISSGLDVIVRRNGQRV 374

Query: 88  DGRGTSTVGEARRRAGKRSHLTGVGG 11
           D  G    G +RR+AG+    T  GG
Sbjct: 375 DENGRGD-GTSRRKAGRGEISTFTGG 399

>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
           (Trithorax homolog 2)
          Length = 2715

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = -3

Query: 316 GFFAMTRFTRTPADSSGEYRGRGHSTREREAELGQVAALDGGTEDEEVEGARWGREAAPD 137
           G   + R    P    G  RGRG         + +  + DG +++EE +G     + AP 
Sbjct: 76  GLRRLRRLWAGPRVQRGRGRGRGRGWGPSRGCVPEEESSDGESDEEEFQGFHSDEDVAPS 135

Query: 136 AERCRLDAESDEGCRLDGRGTST 68
           + R  L ++     R  GR   T
Sbjct: 136 SLRSALRSQRGRAPRGRGRKHKT 158

>JIP2_MOUSE (Q9ERE9) C-jun-amino-terminal kinase-interacting protein 2|
           (JNK-interacting protein 2) (JIP-2) (JNK MAP kinase
           scaffold protein 2) (Islet-brain-2) (IB-2)
           (Mitogen-activated protein kinase 8-interacting protein
           2)
          Length = 830

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
 Frame = -3

Query: 409 PPNTQIHSYLTSKKTDLDSKPRYWMDPPVSSGFFAMTRFTRTPADSSGEYRGRGHSTRER 230
           P   + H   +  +   D +     +PP SSG  + +      AD      G GH  R  
Sbjct: 190 PAEEERHEVQSLARPGCDCEGNQPPEPPASSGGASPSSDPGIEADLRSHSSG-GHEGRRS 248

Query: 229 EAELGQVAALDGGTEDEEVEGARWGREAAPDAERCRLDAESDEGCRLDGRG---TSTVGE 59
             EL        G++ E+  GAR GR  +  +E   L+  SD G    GR    T+++ E
Sbjct: 249 SQELSSP-----GSDSEDAGGARLGRMISSISE-TELELSSDGGSS-SGRSSHLTNSIEE 301

Query: 58  ARRRAGK 38
           A   A +
Sbjct: 302 ASSPASE 308

>LFY_ARATH (Q00958) LEAFY protein|
          Length = 424

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 16/63 (25%)
 Frame = -3

Query: 241 TREREAELGQVAALDGGTEDEEVE----------------GARWGREAAPDAERCRLDAE 110
           T  + AELG  A+   G +DEE+E                G R+G +AA  AER RL  E
Sbjct: 62  TAAKIAELGFTASTLVGMKDEELEEMMNSLSHIFRWELLVGERYGIKAAVRAERRRLQEE 121

Query: 109 SDE 101
            +E
Sbjct: 122 EEE 124

>VE2_HPV1A (P03118) Regulatory protein E2|
          Length = 401

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -1

Query: 249 DTRRGRGRQSSARWRRWTVGRRMKRSKARGGEGKRHRTPSDAG*MRSPTKDAGWMEGVPR 70
           +T + R RQ     RR   GRR  RS   GG  +   TPS         +D G +   P+
Sbjct: 242 ETSQVRQRQQKTPVRRRPYGRRRSRSPRGGGRREGESTPSRTPGSVPSARDVGSIHTTPQ 301

Query: 69  R 67
           +
Sbjct: 302 K 302

>BOFH_BRAOB (Q05536) Putative transcription factor BOFH|
          Length = 415

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 16/63 (25%)
 Frame = -3

Query: 241 TREREAELGQVAALDGGTEDEEVE----------------GARWGREAAPDAERCRLDAE 110
           T  + AELG  A+   G +DEE+E                G R+G +AA  AER RL  E
Sbjct: 62  TAAKIAELGFTASTLVGMKDEELEDMMNSLSHIFRWELLVGERYGIKAAVRAERRRLQEE 121

Query: 109 SDE 101
            +E
Sbjct: 122 EEE 124

>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 29/106 (27%), Positives = 47/106 (44%)
 Frame = -3

Query: 448 SAPRLVFHVLVT*PPNTQIHSYLTSKKTDLDSKPRYWMDPPVSSGFFAMTRFTRTPADSS 269
           SAP L     ++ PP + ++  LTS    L++KPR  + P   SG   +   T  P    
Sbjct: 111 SAPSLPPEPPLSTPPQSSLYPALTSP---LNTKPRPQVLP--DSGGPLIDLLTEDPPP-- 163

Query: 268 GEYRGRGHSTREREAELGQVAALDGGTEDEEVEGARWGREAAPDAE 131
             YR  G  + +   + G+VA  +G  +   +     GR+  P A+
Sbjct: 164 --YRDPGPPSPDGNGDSGEVAPTEGAPDPSPMVSRLRGRKEPPVAD 207

>DBP2_NEUCR (Q7SBC6) ATP-dependent RNA helicase dbp-2 (EC 3.6.1.-)|
          Length = 562

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 113 GVRRRMQAGWKGYLDGWGG--STAGGQAEPLDRGRW 12
           G R R   GW+G   G GG  S  G  A PL+  RW
Sbjct: 527 GYRGRGGGGWRGGRGGGGGGGSVGGANALPLNNRRW 562

>AAPC_PENCL (Q40784) Putative apospory-associated protein C|
          Length = 329

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 393 ICVFGGQVTRTWKTNRGAEFLLVSSKTARK 482
           I ++GGQVT +WK + G E L +SSK   K
Sbjct: 48  IYLYGGQVT-SWKNDNGEELLFLSSKAIFK 76

>MRAW_NITWN (Q3STT6) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 332

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -3

Query: 352 KPRYWMDPPVSSGFFAMTRFTRTPADSSGEYRGRGHSTREREAELGQVAALDGGTE 185
           +P     PP    F  +T+   TP D   +   R  S R R AE    AA+D G E
Sbjct: 266 RPEIERAPP---SFAILTKRPLTPGDDEVQANPRARSARLRAAERTDAAAIDDGAE 318

>GIDB_PORGI (Q7MV10) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited|
           division protein B)
          Length = 221

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 137 VRCRFPSPPRAFDLFILRPTVQRRHLAELCLPLPRRVSSSSILP-*RVCRCTGESSH 304
           + CR  S    FD  + R  ++   LA++C  L RR    + LP   +C   GE  H
Sbjct: 132 MHCRAESIGEKFDFIVSRAVMKLSELAKICRKLIRREDQQNALPNGLICLKGGELQH 188

>YPC4_CAEEL (Q11181) Hypothetical protein C05D10.4|
          Length = 597

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 318 RASSP*LDSPVHLQTLQGSIEDEDTRRGRGRQSSARWRRWTV 193
           R S P LDS       Q  +  + TRR + + S A W+R TV
Sbjct: 358 RKSCPDLDSTAMSNMEQHRVSKKRTRRAKEKMSQAAWKRKTV 399

>ILVD2_RHILO (Q98LB3) Dihydroxy-acid dehydratase 2 (EC 4.2.1.9) (DAD 2)|
          Length = 586

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/47 (44%), Positives = 27/47 (57%)
 Frame = -3

Query: 154 REAAPDAERCRLDAESDEGCRLDGRGTSTVGEARRRAGKRSHLTGVG 14
           R+AAP A R R+DA+     +L  R   TVG A  RA  RS+L  +G
Sbjct: 2   RQAAPPAARMRMDAKVISKAKLPSRHV-TVGPA--RAPHRSYLYAMG 45

>YE56_CAEEL (P90747) Probable cation-transporting ATPase C10C6.6 in chromosome|
           IV (EC 3.6.3.-)
          Length = 1178

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +2

Query: 38  LARPPSSLPNRRGTPSIQPASFVGLRI*PASLGVRCRFPSPPRA 169
           L R  + LP R G P   PA+    R   A  G R R P PP A
Sbjct: 866 LVRSGAQLPQRPGAPGAPPAANAARR--DAPPGARARAPLPPMA 907

>TTP_SHEEP (Q6S9E0) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36)
          Length = 325

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 248 SSSSILP*RVCRCTGESSHGEEARRHGWIHPISGFA 355
           SS S LP    R  G S+   E R  GW+ P  GFA
Sbjct: 40  SSDSSLPEAAARLPGRSTSLVEGRSCGWVPPPPGFA 75

>VE2_HPV12 (P36782) Regulatory protein E2|
          Length = 494

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 264 SIEDEDTRRGRGRQSSARWRRWTVGRRMKRSKARGGEGKRHRTPS 130
           S + +  R+G GR+ S+R RR    +R  RS+ R     R R+ S
Sbjct: 234 SQQADPRRKGYGRRPSSRTRRQETQQRRSRSRYRSQSNSRSRSQS 278

>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 7   RXHLPLSSGSACPPAVEPP 63
           R +LP S+G  CPP  EPP
Sbjct: 76  RINLPPSTGCGCPPGTEPP 94

>CU058_HUMAN (P58505) Protein C21orf58|
          Length = 239

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 18/62 (29%)
 Frame = +1

Query: 31  GSACPPAVEP-------------PQPSRY-----PFHPACILRRTPHLACIARRPVPLPF 156
           GSA PP + P             P P R      P  PA I+++ P    IA+ P P  F
Sbjct: 88  GSALPPELPPTGILPTASPSPLAPDPPRIILPTVPQPPATIIQQLPQQPLIAQIPPPQAF 147

Query: 157 PT 162
           PT
Sbjct: 148 PT 149

>FHOD1_HUMAN (Q9Y613) FH1/FH2 domain-containing protein (Formin homolog|
           overexpressed in spleen) (FHOS) (Formin homology 2
           domain-containing protein 1)
          Length = 1163

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 16  LPLSSGSACPPAVEPPQPSRYPFHP 90
           LPL SG   PP + PP P + PF P
Sbjct: 575 LPLLSGVPPPPPLPPPPPIKGPFPP 599

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
 Frame = -2

Query: 140 GRRAMQARCGVRRRMQAGWKGYLDGWGGSTAG------GQAEPLDRGR 15
           G R    R GV      GW G    WGGS  G      G A+P + GR
Sbjct: 191 GGRGGGGRGGVGGGAGGGWGGGRGDWGGSAGGGGGGGWGGADPWENGR 238

>MARK4_HUMAN (Q96L34) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase-like 1)
          Length = 752

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +2

Query: 14  TYPCQVAPLARPPSSLPNRR----GTPSIQPAS 100
           TY C   P A  PS LPN +    GTP + PAS
Sbjct: 511 TYVCTERPGAERPSLLPNGKENSSGTPRVPPAS 543

>TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1033

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 304 MTRFTRTPADSSGEYRGRGHSTREREAELGQV---AALDGGTEDEE 176
           ++R T TP DS   + G G STR R+ ++ Q     AL G T  +E
Sbjct: 201 VSRRTTTPPDSGVLFEGLGISTRPRDVDIPQFMRQMALRGPTTTDE 246

>HEMA_INBBO (P10448) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain] (Fragment)
          Length = 575

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 98  MQAGWKGYLDGWGGSTAGG 42
           ++ GW+G +DGW G T+ G
Sbjct: 362 LEGGWEGMIDGWHGYTSHG 380

>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36) (TIS11A protein) (TIS11)
          Length = 324

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 248 SSSSILP*RVCRCTGESSHGEEARRHGWIHPISGFA 355
           SS S LP    R  G S+   E R  GW+ P  GFA
Sbjct: 40  SSDSSLPEVAARLPGRSTSLVEGRSCGWVPPPPGFA 75

>VE2_HPV47 (P22420) Regulatory protein E2|
          Length = 506

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 294 SPVHLQTLQGSIEDEDTRRGRGRQSSARWRRWTVGRRMKRSKAR 163
           SP      + S + E  RRG GR+ S+R RR    +R  RS++R
Sbjct: 230 SPRRQSINKQSQQTETKRRGYGRRPSSRTRRPQTHQRRSRSRSR 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,546,904
Number of Sequences: 219361
Number of extensions: 1954595
Number of successful extensions: 7228
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7203
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)