| Clone Name | basd16c01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 196 cgtccagcgccgccacctggccg 218 ||||||||||||||||||||||| Sbjct: 2551012 cgtccagcgccgccacctggccg 2550990
>gb|AC084736.5| Homo sapiens chromosome 8, clone RP11-473A17, complete sequence Length = 180098 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 459 gtcagcagcaagactgcaagga 480 |||||||||||||||||||||| Sbjct: 44163 gtcagcagcaagactgcaagga 44184
>gb|AC008066.4| Homo sapiens BAC clone RP11-293D9 from 8, complete sequence Length = 174347 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 459 gtcagcagcaagactgcaagga 480 |||||||||||||||||||||| Sbjct: 625 gtcagcagcaagactgcaagga 604
>gb|AC063932.14| Homo sapiens 3 BAC RP11-298A18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186897 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 410 tcaagtgactagaacatggaag 431 |||||||||||||||||||||| Sbjct: 63073 tcaagtgactagaacatggaag 63094
>emb|AL354879.12| Human DNA sequence from clone RP11-4E23 on chromosome 9 Contains the 5' end of the MLLT3 gene for myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9), a novel gene, the 5' end of a novel gene (FLJ2035, KIAA1797) and two CpG islands, complete sequence Length = 82270 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 agctctgcctccctctccctc 239 ||||||||||||||||||||| Sbjct: 43977 agctctgcctccctctccctc 43997
>gb|AC116173.3| Homo sapiens BAC clone RP11-68E11 from 4, complete sequence Length = 10877 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 549 atctattttgttgcttatgttgctt 573 ||||||||||||| ||||||||||| Sbjct: 3762 atctattttgttgtttatgttgctt 3786
>gb|AC084663.1|CBRG47C05 Caenorhabditis briggsae cosmid G47C05, complete sequence Length = 35766 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 tgtgtatttggaggtcaagtg 416 ||||||||||||||||||||| Sbjct: 11080 tgtgtatttggaggtcaagtg 11060
>emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-517O13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176343 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 549 atctattttgttgcttatgtt 569 ||||||||||||||||||||| Sbjct: 48119 atctattttgttgcttatgtt 48099
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tgcaaggaagactcgtttttggtg 496 ||||| |||||||||||||||||| Sbjct: 224227 tgcaaagaagactcgtttttggtg 224250
>gb|AC115930.10| Mus musculus chromosome 3, clone RP24-534H10, complete sequence Length = 158041 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 cagatcatatacactgaagt 536 |||||||||||||||||||| Sbjct: 77926 cagatcatatacactgaagt 77945
>gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynthetic gene cluster, complete sequence Length = 99892 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cgctcggcgtccggtgccgc 148 |||||||||||||||||||| Sbjct: 5942 cgctcggcgtccggtgccgc 5923
>ref|XM_424097.1| PREDICTED: Gallus gallus similar to Nasopharyngeal epithelium specific protein 1 (LOC426452), partial mRNA Length = 756 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cgagctctgcctccctctcc 236 |||||||||||||||||||| Sbjct: 94 cgagctctgcctccctctcc 75
>ref|XM_418214.1| PREDICTED: Gallus gallus similar to caytaxin (LOC420094), mRNA Length = 3306 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 catcctccgtcccaccgtcc 200 |||||||||||||||||||| Sbjct: 2563 catcctccgtcccaccgtcc 2544
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cgagctctgcctccctctcc 236 |||||||||||||||||||| Sbjct: 14540412 cgagctctgcctccctctcc 14540431
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ccagcgccgccacctggccg 218 |||||||||||||||||||| Sbjct: 1961257 ccagcgccgccacctggccg 1961276
>ref|XM_753378.1| Ustilago maydis 521 hypothetical protein (UM02324.1) partial mRNA Length = 438 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 ttcgacctcttcatcctccgtccc 193 |||||||||||||||||| ||||| Sbjct: 22 ttcgacctcttcatcctcggtccc 45
>gb|AC145864.2| Pan troglodytes BAC clone RP43-6L18 from 7, complete sequence Length = 206128 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 ttttgttgcttatgttgctt 573 |||||||||||||||||||| Sbjct: 173127 ttttgttgcttatgttgctt 173108
>gb|AC146264.3| Pan troglodytes BAC clone RP43-28O13 from 7, complete sequence Length = 163276 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 ttttgttgcttatgttgctt 573 |||||||||||||||||||| Sbjct: 55457 ttttgttgcttatgttgctt 55438
>gb|AC012399.40| Mus musculus strain 129S6/SvEvTac clone rp21-184c17 map 16, complete sequence Length = 146040 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gtaccccttccatccagcct 94 |||||||||||||||||||| Sbjct: 68206 gtaccccttccatccagcct 68187
>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete sequence Length = 147130 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cgagctctgcctccctctcc 236 |||||||||||||||||||| Sbjct: 117299 cgagctctgcctccctctcc 117280
>emb|AL669937.11| Mouse DNA sequence from clone DN-358O3 on chromosome 3 Contains the Trim45 gene for tripartite motif-containing 45, the Ttf2 gene for transcription termination factor RNA polymerase II, the ortholog of human immunoglobulin superfamily member 2 IGSF2 (Gm1016 genemodel 1016 (NCBI)) and the 3' end of the Ptgfrn gene for prostaglandin F2 receptor negative regulator, complete sequence Length = 163674 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 gagctctgcctccctctccc 237 |||||||||||||||||||| Sbjct: 110485 gagctctgcctccctctccc 110466
>ref|NM_204770.1| Gallus gallus forkhead box A2 (FOXA2), mRNA Length = 2146 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 gtgttcatgctgttcatgcc 513 |||||||||||||||||||| Sbjct: 482 gtgttcatgctgttcatgcc 463
>gb|AC113134.5| Homo sapiens chromosome 8, clone RP11-1031I13, complete sequence Length = 178804 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 agcagcaagactgcaaggaa 481 |||||||||||||||||||| Sbjct: 119807 agcagcaagactgcaaggaa 119826
>gb|AC084822.36| Mus musculus strain C57BL/6J clone rp23-47o21 map 16, complete sequence Length = 195335 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gtaccccttccatccagcct 94 |||||||||||||||||||| Sbjct: 184013 gtaccccttccatccagcct 184032
>dbj|AK052022.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230036H06 product:DnaJ (Hsp40) homolog, subfamily C, member 1, full insert sequence Length = 1575 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ctgcctccctctccctcgtc 242 |||||||||||||||||||| Sbjct: 505 ctgcctccctctccctcgtc 524
>gb|AF062498.1|AF062498 Oncorhynchus mykiss insulin receptor c (IRc) mRNA, partial cds Length = 2016 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 cgggtggatccatccaatat 344 |||||||||||||||||||| Sbjct: 682 cgggtggatccatccaatat 701
>gb|AC005079.6|AC005079 Homo sapiens BAC clone CTA-252P22 from 7, complete sequence Length = 415268 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 ttttgttgcttatgttgctt 573 |||||||||||||||||||| Sbjct: 4086 ttttgttgcttatgttgctt 4067
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ggtggatccatccaatatct 346 |||||||||||||||||||| Sbjct: 11141387 ggtggatccatccaatatct 11141406
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cgagctctgcctccctctcc 236 |||||||||||||||||||| Sbjct: 14535387 cgagctctgcctccctctcc 14535406
>gb|AC146534.3| Otolemur garnettii clone CH256-50E17, complete sequence Length = 139631 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tgcaaggaagactcgtttttggtg 496 ||||| |||||||||||||||||| Sbjct: 34721 tgcaaagaagactcgtttttggtg 34744
>dbj|AB050939.2| Gallus gallus Foxa2 gene for transcription factor Foxa2, complete cds Length = 1548 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 gtgttcatgctgttcatgcc 513 |||||||||||||||||||| Sbjct: 356 gtgttcatgctgttcatgcc 337
>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete sequence Length = 135594 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cgagctctgcctccctctcc 236 |||||||||||||||||||| Sbjct: 969 cgagctctgcctccctctcc 950
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gtaccccttccatccagcct 94 |||||||||||||||||||| Sbjct: 107456 gtaccccttccatccagcct 107437
>dbj|AP005685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0004P20 Length = 160410 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ggtggatccatccaatatct 346 |||||||||||||||||||| Sbjct: 100194 ggtggatccatccaatatct 100213
>dbj|AB018107.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K12B20 Length = 78874 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 aggaagactcgtttttggtg 496 |||||||||||||||||||| Sbjct: 77332 aggaagactcgtttttggtg 77313
>gb|AF150749.1|AF150749 Gallus gallus hepatocyte nuclear factor-3beta (HNF-3beta) mRNA, complete cds Length = 2146 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 gtgttcatgctgttcatgcc 513 |||||||||||||||||||| Sbjct: 482 gtgttcatgctgttcatgcc 463
>gb|AC005783.1|AC005783 Homo sapiens chromosome 19, cosmid R33083, complete sequence Length = 43501 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 ccgagctctgcctccctctccctc 239 ||||||||| |||||||||||||| Sbjct: 5568 ccgagctctccctccctctccctc 5545
>gb|AY105198.1| Zea mays PCO070011 mRNA sequence Length = 1505 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 360 agatctgtctttttggaggtcaagtaac 387 |||||| ||||| ||||||||||||||| Sbjct: 272 agatctatctttatggaggtcaagtaac 299
>emb|AL845265.20| Mouse DNA sequence from clone RP23-158O8 on chromosome 2, complete sequence Length = 195031 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ctgcctccctctccctcgtc 242 |||||||||||||||||||| Sbjct: 72443 ctgcctccctctccctcgtc 72424
>gb|L38904.1|CHKHNF3B Gallus domesticus HNF-3b mRNA, 3' end of cds Length = 1238 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 gtgttcatgctgttcatgcc 513 |||||||||||||||||||| Sbjct: 46 gtgttcatgctgttcatgcc 27
>emb|AL845316.3| Mouse DNA sequence from clone RP23-348I7 on chromosome X, complete sequence Length = 197688 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tctttttggaggtcaagtaa 386 |||||||||||||||||||| Sbjct: 134041 tctttttggaggtcaagtaa 134022
>emb|AL669872.8| Mouse DNA sequence from clone RP23-357D5 on chromosome 3, complete sequence Length = 199673 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 gagctctgcctccctctccc 237 |||||||||||||||||||| Sbjct: 165013 gagctctgcctccctctccc 164994 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,140,808 Number of Sequences: 3902068 Number of extensions: 5140808 Number of successful extensions: 108377 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108106 Number of HSP's gapped (non-prelim): 271 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)