ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16b18 |
|---|---|
| Clone Library Name | barley_pub |
>TRI48_HUMAN (Q8IWZ4) Tripartite motif protein 48 (RING finger protein 101)| Length = 375 Score = 37.7 bits (86), Expect = 0.026 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 + +CP+CMN +DP + CGH FC Sbjct: 12 ELTCPICMNYFIDPVTIDCGHSFC 35
>ZN313_RAT (Q6J2U6) Zinc finger protein 313| Length = 229 Score = 37.4 bits (85), Expect = 0.034 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +3 Query: 498 KSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 +S P E +F+CPVC+ P CGH+FC Sbjct: 14 QSAKPASETDPLSRFTCPVCLEVFEKPVQVPCGHVFC 50
>ZN313_MOUSE (Q9ET26) Zinc finger protein 313| Length = 229 Score = 37.4 bits (85), Expect = 0.034 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +3 Query: 498 KSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 +S P E +F+CPVC+ P CGH+FC Sbjct: 14 QSAKPASETDPLSRFTCPVCLEVFEKPVQVPCGHVFC 50
>TRI12_MOUSE (Q99PQ1) Tripartite motif protein 12| Length = 284 Score = 36.6 bits (83), Expect = 0.059 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +CPVC+N +V P S CGH FC Sbjct: 14 TCPVCLNLMVKPVSADCGHTFC 35
>TRI49_HUMAN (Q9NS80) Tripartite motif protein 49 (RING finger protein 18)| (Testis-specific ring-finger protein) Length = 452 Score = 36.2 bits (82), Expect = 0.077 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 CP+CMN +DP + CGH FC Sbjct: 15 CPLCMNYFIDPVTIDCGHSFC 35
>YEU6_YEAST (P40072) Hypothetical 30.8 kDa protein in SPR6-RPL23B intergenic| region Length = 274 Score = 36.2 bits (82), Expect = 0.077 Identities = 24/107 (22%), Positives = 42/107 (39%) Frame = +3 Query: 288 TGNIGPSSSSADMVPPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHDHPRANNNNLMIDT 467 T N +S D PP T GT + D T ++ ++ + + ++++ +T Sbjct: 135 TANTPSASPMLDAAPPTTKPGTNSKEQTVDL---TADAIDLDAEEQQVLQISDDDFQEET 191 Query: 468 VDIPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 + P KE + CP+C T+CGH+FC Sbjct: 192 KEAP------------KEYGAAKDYRCPICFEPPETALMTLCGHVFC 226
>TRI43_HUMAN (Q96BQ3) Tripartite motif protein 43| Length = 446 Score = 36.2 bits (82), Expect = 0.077 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 + + +C +C+N LVDP + CGH FC Sbjct: 10 QKELTCVICLNYLVDPVTICCGHSFC 35
>ZN313_BOVIN (Q4U5R4) Zinc finger protein 313| Length = 230 Score = 35.8 bits (81), Expect = 0.10 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +3 Query: 477 PATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 PA + + P E +F+CPVC+ P CGH+FC Sbjct: 8 PARDGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFC 51
>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog| Length = 1812 Score = 35.0 bits (79), Expect = 0.17 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Frame = +3 Query: 501 SRAPVKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFC 608 S ++EV+N + CP+C+ + +P ST C HIFC Sbjct: 4 SAVQIQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFC 44
>ZN313_PIG (Q6J1I8) Zinc finger protein 313| Length = 228 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 510 PVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 P E +F+CPVC+ P CGH+FC Sbjct: 17 PAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFC 49
>ZN313_PANTR (Q6J212) Zinc finger protein 313| Length = 228 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 510 PVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 P E +F+CPVC+ P CGH+FC Sbjct: 17 PAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFC 49
>ZN313_HUMAN (Q9Y508) Zinc finger protein 313 (RING finger protein 114)| Length = 228 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 510 PVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 P E +F+CPVC+ P CGH+FC Sbjct: 17 PAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFC 49
>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 35.0 bits (79), Expect = 0.17 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Frame = +3 Query: 501 SRAPVKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFC 608 S V+EV+N + CP+C+ + +P ST C HIFC Sbjct: 4 SAVRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFC 44
>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 35.0 bits (79), Expect = 0.17 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Frame = +3 Query: 501 SRAPVKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFC 608 S V+EV+N + CP+C+ + +P ST C HIFC Sbjct: 4 SAVRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFC 44
>TRI26_PANTR (Q7YR34) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 539 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +3 Query: 495 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 + + AP++ + E +C +C++ L DP + CGH+FC Sbjct: 1 MATSAPLRSLEEE--VTCSICLDYLRDPVTIDCGHVFC 36
>TRI26_HUMAN (Q12899) Tripartite motif protein 26 (Zinc finger protein 173)| (Acid finger protein) (AFP) (RING finger protein 95) Length = 539 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +3 Query: 495 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 + + AP++ + E +C +C++ L DP + CGH+FC Sbjct: 1 MATSAPLRSLEEE--VTCSICLDYLRDPVTIDCGHVFC 36
>PZRN3_MOUSE (Q69ZS0) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1063 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 +P C +C L DP +T CGH+FC Sbjct: 13 DPDLKCALCHKVLEDPLTTPCGHVFC 38
>YQDA_CAEEL (Q09268) Hypothetical RING finger protein C32D5.10 in chromosome II| Length = 610 Score = 35.0 bits (79), Expect = 0.17 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +3 Query: 426 DHPRANNNNLMIDTVDIPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSS-TICGHI 602 D P + + L +T+ + + +S +E+ +EP+ C VC NE++D +S + C H Sbjct: 2 DSPSTSESPLKKNTIQDFGESNMTESPQSKEEI-DEPEEECSVCKNEIIDTTSLSDCCHE 60 Query: 603 FC 608 FC Sbjct: 61 FC 62
>TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger protein 94) (50| kDa-stimulated trans-acting factor) (Staf-50) Length = 498 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E + +CP+C+ L +P S CGH FC Sbjct: 10 EKEVTCPICLELLTEPLSLDCGHSFC 35
>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47| Length = 641 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 540 FSCPVCMNELVDPSSTICGHIFC 608 FSCP+C+ L +P + CGH FC Sbjct: 7 FSCPICLEPLREPVTLPCGHNFC 29
>TRI26_PIG (O77666) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 545 Score = 35.0 bits (79), Expect = 0.17 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +3 Query: 495 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 + + AP++ + E +C +C++ L DP + CGH+FC Sbjct: 1 MATSAPLRSLEEE--VTCSICLDYLRDPVTIDCGHVFC 36
>PZRN3_RAT (P68907) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1062 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 +P C +C L DP +T CGH+FC Sbjct: 13 DPDLKCALCHKVLEDPLTTPCGHVFC 38
>PZRN3_HUMAN (Q9UPQ7) PDZ domain-containing RING finger protein 3 (Ligand of| Numb-protein X 3) (Semaphorin cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1066 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 +P C +C L DP +T CGH+FC Sbjct: 13 DPDLKCALCHKVLEDPLTTPCGHVFC 38
>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in| astrocytoma protein) (RING finger protein 100) Length = 638 Score = 35.0 bits (79), Expect = 0.17 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 540 FSCPVCMNELVDPSSTICGHIFC 608 FSCP+C+ L +P + CGH FC Sbjct: 7 FSCPICLEPLREPVTLPCGHNFC 29
>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog| Length = 1849 Score = 34.7 bits (78), Expect = 0.22 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = +3 Query: 513 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFC 608 V+EV+N + CP+C+ + +P ST C HIFC Sbjct: 8 VEEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFC 44
>RO52_HUMAN (P19474) 52 kDa Ro protein (Sjoegren syndrome type A antigen)| (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen Ro/SS-A) (Tripartite motif protein 21) (RING finger protein 81) Length = 475 Score = 34.7 bits (78), Expect = 0.22 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +CP+C++ V+P S CGH FC Sbjct: 15 TCPICLDPFVEPVSIECGHSFC 36
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 34.7 bits (78), Expect = 0.22 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = +3 Query: 513 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFC 608 V+EV+N + CP+C+ + +P ST C HIFC Sbjct: 8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFC 44
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 34.7 bits (78), Expect = 0.22 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = +3 Query: 513 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFC 608 V+EV+N + CP+C+ + +P ST C HIFC Sbjct: 8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFC 44
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 34.7 bits (78), Expect = 0.22 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = +3 Query: 513 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFC 608 V+EV+N + CP+C+ + +P ST C HIFC Sbjct: 8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFC 44
>BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein homolog| Length = 1878 Score = 34.7 bits (78), Expect = 0.22 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = +3 Query: 513 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFC 608 V+EV+N + CP+C+ + +P ST C HIFC Sbjct: 8 VEEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFC 44
>BFAR_HUMAN (Q9NZS9) Bifunctional apoptosis regulator (RING finger protein 47)| Length = 450 Score = 34.7 bits (78), Expect = 0.22 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = +3 Query: 459 IDTVDIPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 ++T+D+ + LKS P V +FSC C + LV+P++ CGH FC Sbjct: 9 VNTMDLER-DEPLKSTGPQISVS---EFSCHCCYDILVNPTTLNCGHSFC 54
>TRI40_HUMAN (Q6P9F5) Tripartite motif 40 protein (RING finger protein 35)| Length = 258 Score = 34.7 bits (78), Expect = 0.22 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 528 NEPKFSCPVCMNELVDPSSTICGHIFC 608 N+ + CP+C L + ST CGH+FC Sbjct: 8 NQEEGVCPICQESLKEAVSTNCGHLFC 34
>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 542 Score = 34.7 bits (78), Expect = 0.22 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 507 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 AP++ + E +C +C++ L DP + CGH+FC Sbjct: 5 APLRSLEEE--VTCSICLDYLRDPVTIDCGHVFC 36
>TRI40_PANTR (Q1XHT8) Tripartite motif 40 protein| Length = 229 Score = 34.7 bits (78), Expect = 0.22 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 528 NEPKFSCPVCMNELVDPSSTICGHIFC 608 N+ + CP+C L + ST CGH+FC Sbjct: 8 NQEEGVCPICQESLKEAVSTNCGHLFC 34
>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 545 Score = 34.7 bits (78), Expect = 0.22 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 507 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 AP++ + E +C +C++ L DP + CGH+FC Sbjct: 5 APLRSLEEE--VTCSICLDYLRDPVTIDCGHVFC 36
>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog| Length = 1817 Score = 34.7 bits (78), Expect = 0.22 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Frame = +3 Query: 501 SRAPVKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFC 608 S ++EV+N + CP+C+ + +P ST C HIFC Sbjct: 4 SAVRIQEVQNVLHAMQKILECPICLELIKEPVSTQCDHIFC 44
>TRIM6_MOUSE (Q8BGE7) Tripartite motif protein 6| Length = 488 Score = 34.3 bits (77), Expect = 0.29 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +3 Query: 519 EVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 ++R+E +CP+C+ L +P S CGH FC Sbjct: 8 DIRDE--VTCPICLELLTEPLSIDCGHSFC 35
>TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger protein 87)| Length = 500 Score = 33.9 bits (76), Expect = 0.38 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 + + +CP+C++ DP S CGH FC Sbjct: 7 QEELTCPICLDYFQDPVSIECGHNFC 32
>RN125_MACFA (Q95KF1) RING finger protein 125 (EC 6.3.2.-)| Length = 231 Score = 33.9 bits (76), Expect = 0.38 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%) Frame = +3 Query: 519 EVRNEPK-----FSCPVCMNELVDPSSTICGHIFC 608 E R +P+ F C VC+ L P T CGH+FC Sbjct: 22 ERRGDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC 56
>RN125_HUMAN (Q96EQ8) RING finger protein 125 (EC 6.3.2.-) (T-cell RING| activation protein 1) (TRAC-1) Length = 231 Score = 33.9 bits (76), Expect = 0.38 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%) Frame = +3 Query: 519 EVRNEPK-----FSCPVCMNELVDPSSTICGHIFC 608 E R +P+ F C VC+ L P T CGH+FC Sbjct: 22 ERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFC 56
>TRIM6_HUMAN (Q9C030) Tripartite motif protein 6 (RING finger protein 89)| Length = 488 Score = 33.9 bits (76), Expect = 0.38 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 519 EVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 ++R E +CP+C+ L +P S CGH FC Sbjct: 8 DIREE--VTCPICLELLTEPLSIDCGHSFC 35
>TRAF6_MOUSE (P70196) TNF receptor-associated factor 6| Length = 530 Score = 33.9 bits (76), Expect = 0.38 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E K+ CP+C+ L + T CGH FC Sbjct: 65 ESKYECPICLMALREAVQTPCGHRFC 90
>TRAF6_HUMAN (Q9Y4K3) TNF receptor-associated factor 6 (Interleukin 1 signal| transducer) (RING finger protein 85) Length = 522 Score = 33.9 bits (76), Expect = 0.38 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E K+ CP+C+ L + T CGH FC Sbjct: 65 ESKYECPICLMALREAVQTPCGHRFC 90
>CWC24_CANAL (Q5ACW2) Pre-mRNA-splicing factor CWC24| Length = 216 Score = 33.9 bits (76), Expect = 0.38 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +3 Query: 513 VKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 VKE + P F C +C ++ P T CGHIFC Sbjct: 146 VKEKEDIP-FKCVLCKSDYKSPIKTECGHIFC 176
>JD2AA_XENLA (Q6IRB8) JmjC domain-containing histone demethylation protein 2A-A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A-A) Length = 1331 Score = 33.5 bits (75), Expect = 0.50 Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Frame = +3 Query: 135 YAIKTLSARNQQNQQNLASSRQIASSPGH---GTMILTPGITQGASE---NSRMSYVTGN 296 Y T + + QQ+L+S + + G G TPGI A+ NS S+ G Sbjct: 313 YINTTTEDQQKVQQQSLSSKQSVPVGFGEALLGCAATTPGILNAATPPQANSPPSF--GA 370 Query: 297 IGPSSSSADMVPPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHDHPRANNNNLMIDTVDI 476 P +P +T TLL GEA E N LS + + N +L ++ Sbjct: 371 ATPQGKGTQNLPGDT---TLLNGEAKREETNLFLSAAAS-------QGNKRSLGFGMMES 420 Query: 477 PATNRLLKS 503 P+T L S Sbjct: 421 PSTFSSLSS 429
>BFAR_RAT (Q5PQN2) Bifunctional apoptosis regulator| Length = 450 Score = 33.5 bits (75), Expect = 0.50 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 +FSC C + LV+P++ CGH FC Sbjct: 31 EFSCHCCYDTLVNPTTLNCGHSFC 54
>BFAR_MOUSE (Q8R079) Bifunctional apoptosis regulator| Length = 450 Score = 33.5 bits (75), Expect = 0.50 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 +FSC C + LV+P++ CGH FC Sbjct: 31 EFSCHCCYDTLVNPTTLNCGHSFC 54
>RN125_MOUSE (Q9D9R0) RING finger protein 125 (EC 6.3.2.-)| Length = 232 Score = 33.5 bits (75), Expect = 0.50 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 540 FSCPVCMNELVDPSSTICGHIFC 608 F C VC+ L P T CGH+FC Sbjct: 34 FDCSVCLEVLHQPVRTRCGHVFC 56
>COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Constitutive| photomorphogenesis protein 1) Length = 672 Score = 33.5 bits (75), Expect = 0.50 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 540 FSCPVCMNELVDPSSTICGHIFC 608 F CP+CM + D T CGH FC Sbjct: 45 FLCPICMQIIKDAFLTACGHSFC 67
>TRIM5_HUMAN (Q9C035) Tripartite motif protein 5 (EC 6.3.2.-) (RING finger| protein 88) Length = 493 Score = 33.1 bits (74), Expect = 0.65 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 522 VRNEPKFSCPVCMNELVDPSSTICGHIFC 608 V + + +CP+C+ L P S CGH FC Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFC 35
>SYWM_CAEEL (P46579) Probable tryptophanyl-tRNA synthetase, mitochondrial (EC| 6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS) Length = 650 Score = 33.1 bits (74), Expect = 0.65 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 534 PKFSCPVCMNELVDPSSTICGHIFC 608 P F C +C+ E +PS+ CGH+FC Sbjct: 251 PTFQCSICL-ENKNPSALFCGHLFC 274
>RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A antigen)| (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen Ro/SS-A) (Tripartite motif protein 21) Length = 470 Score = 33.1 bits (74), Expect = 0.65 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +C +C++ +V+P S CGH FC Sbjct: 19 TCSICLDPMVEPMSIECGHCFC 40
>TRI17_RAT (Q9WV59) Tripartite motif protein 17 (Testis RING finger protein)| Length = 477 Score = 32.7 bits (73), Expect = 0.85 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 525 RNEPKFSCPVCMNELVDPSSTICGHIFC 608 R + + +C +C++ DP T CGH FC Sbjct: 9 RLQEEATCSICLDYFTDPVMTACGHNFC 36
>TRI17_MOUSE (Q7TPM3) Tripartite motif protein 17| Length = 477 Score = 32.7 bits (73), Expect = 0.85 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 525 RNEPKFSCPVCMNELVDPSSTICGHIFC 608 R + + +C +C++ DP T CGH FC Sbjct: 9 RLQEEATCSICLDYFTDPVMTACGHNFC 36
>PEX10_PICAN (Q00940) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (Peroxisome assembly protein PER8) Length = 295 Score = 32.7 bits (73), Expect = 0.85 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E +C +C++ + DPS CGH+FC Sbjct: 240 EASRTCMLCLSPMKDPSCGECGHVFC 265
>TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)| Length = 467 Score = 32.3 bits (72), Expect = 1.1 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 507 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 AP + + +C +C++ DP T CGH FC Sbjct: 3 APDLSTNLQEEATCAICLDYFTDPVMTDCGHNFC 36
>RAG1_RABIT (P34088) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1042 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +3 Query: 474 IPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 I + +LL P V++ SC +C + L DP T C H+FC Sbjct: 271 IHLSTKLLAVDFPAHFVKS---ISCQICEHILADPVETSCKHVFC 312
>PZRN4_HUMAN (Q6ZMN7) PDZ domain-containing RING finger protein 4 (Ligand of| Numb-protein X 4) (SEMACAP3-like protein) Length = 1036 Score = 32.3 bits (72), Expect = 1.1 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 +P C +C L +P T CGH+FC Sbjct: 13 DPALECKLCGQVLEEPLCTPCGHVFC 38
>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger| protein 92) (BIA1 protein) Length = 468 Score = 32.3 bits (72), Expect = 1.1 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 507 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 AP + + +C +C++ DP T CGH FC Sbjct: 3 APDLSTNLQEEATCAICLDYFTDPVMTDCGHNFC 36
>LNX1_MOUSE (O70263) Ubiquitin ligase LNX (EC 6.3.2.-) (Numb-binding protein 1)| (Ligand of Numb-binding protein 1) (Ligand of Numb-protein X 1) Length = 728 Score = 32.3 bits (72), Expect = 1.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C+ L+DP T CGH +C Sbjct: 45 CHICLQALLDPLDTPCGHTYC 65
>LNX1_HUMAN (Q8TBB1) Ubiquitin ligase LNX (EC 6.3.2.-) (Numb-binding protein 1)| (Ligand of Numb-protein X 1) Length = 728 Score = 32.3 bits (72), Expect = 1.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C+ L+DP T CGH +C Sbjct: 41 CHICLQALLDPLDTPCGHTYC 61
>RAG1_MOUSE (P15919) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1040 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +3 Query: 474 IPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 I + +LL P V++ SC +C + L DP T C H+FC Sbjct: 269 IHLSTKLLAVDFPAHFVKS---ISCQICEHILADPVETSCKHLFC 310
>RAG1_CHICK (P24271) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1041 Score = 32.0 bits (71), Expect = 1.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 SC +C + L DP T C H+FC Sbjct: 288 SCQICEHILADPVETTCRHLFC 309
>RAG1_PIG (Q867B5) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1043 Score = 32.0 bits (71), Expect = 1.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 SC +C + L DP T C H+FC Sbjct: 292 SCQICEHILADPVETSCKHVFC 313
>TRI17_HUMAN (Q9Y577) Tripartite motif protein 17 (Testis RING finger protein)| (RING finger protein 16) Length = 477 Score = 32.0 bits (71), Expect = 1.4 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +C +C++ DP T CGH FC Sbjct: 15 TCSICLDYFTDPVMTTCGHNFC 36
>TRI10_PIG (O19085) Tripartite motif protein 10 (RING finger protein 9)| (B30-RING finger protein) Length = 482 Score = 32.0 bits (71), Expect = 1.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 495 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 + S A V + +E +CP+C L +P + CGH FC Sbjct: 1 MASAASVSSLADE--VNCPICQGTLREPVTIDCGHNFC 36
>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (mCOP1) Length = 733 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +3 Query: 474 IPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 +P N LL S ++ N+ F CP+C + + + T CGH FC Sbjct: 119 VPLCNGLLNS---YEDKSND--FVCPICFDMIEEAYMTKCGHSFC 158
>RAD5_ASPFU (Q4WVM1) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1245 Score = 32.0 bits (71), Expect = 1.4 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +3 Query: 513 VKEVRNEPKFSCPVCMNE-LVDPSSTICGHIFC 608 +++++ E CP+C E ++DP+ T C H C Sbjct: 930 LRQIQTESSGECPICSEEPMIDPAVTACWHSAC 962
>COP1_ARATH (P43254) Ubiquitin-protein ligase COP1 (EC 6.3.2.-) (Constitutive| photomorphogenesis protein 1) Length = 675 Score = 32.0 bits (71), Expect = 1.4 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 CP+CM + D T CGH FC Sbjct: 52 CPICMQIIKDAFLTACGHSFC 72
>CWC24_SCHPO (Q9P6R8) Pre-mRNA-splicing factor cwc24 (Complexed with cdc5| protein 24) (Cell cycle control protein cwf24) Length = 533 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Frame = +3 Query: 522 VRNEPK----FSCPVCMNELVDPSSTICGHIFC 608 V+NE K F C +C + P +T CGH FC Sbjct: 242 VKNEKKEDIPFVCLICKKDYRSPIATTCGHHFC 274
>RAG1_HUMAN (P15918) V(D)J recombination-activating protein 1 (RAG-1) (RING| finger protein 74) Length = 1043 Score = 31.6 bits (70), Expect = 1.9 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 SC +C + L DP T C H+FC Sbjct: 292 SCQICEHILADPVETNCKHVFC 313
>RAD5_EMENI (Q5BHD6) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1202 Score = 31.6 bits (70), Expect = 1.9 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +3 Query: 513 VKEVRNEPKFSCPVCMNE-LVDPSSTICGHIFC 608 +++++ E CP+C E ++DP+ T C H C Sbjct: 881 LRQIQTESAGECPICSEEPMIDPAVTACWHSAC 913
>RNF5_CAEEL (Q09463) RING finger protein 5| Length = 235 Score = 31.6 bits (70), Expect = 1.9 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 +F C +C++ D ++CGH+FC Sbjct: 23 RFECNICLDAAKDAVVSLCGHLFC 46
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 31.6 bits (70), Expect = 1.9 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 21/127 (16%) Frame = +3 Query: 291 GNIGPSSSSADMVPPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHDHP-RANNNNLM--- 458 G+ GP S+SA PP P++ V T++S+G + Q RA NN+L Sbjct: 709 GSSGPGSTSAAADPP------------PEDCVTTIVSMGFSRDQALKALRATNNSLERAV 756 Query: 459 ------IDTVDIPATNRLLKSRAPVK----------EVRNEP-KFSCPVCMNELVDPSST 587 ID +D A + + R+ + +VR+ P K+ ++ + +ST Sbjct: 757 DWIFSHIDDLDAEAAMDISEGRSAAESISESVPVGPKVRDGPGKYQLFAFISHM--GTST 814 Query: 588 ICGHIFC 608 +CGH C Sbjct: 815 MCGHYVC 821
>JSN1_YEAST (P47135) Protein JSN1 (Protein PUF1)| Length = 1091 Score = 31.6 bits (70), Expect = 1.9 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 19/123 (15%) Frame = +3 Query: 141 IKTLSARNQQNQQNLASSRQIASSPGHGTMILTPGITQGASENSRMSY--------VTGN 296 ++ LS + ++ + ++ ++ G L+PG A+ NS M Y V+G Sbjct: 947 MRGLSVSSVKSGGSKHTTMNTTTTNGSSASTLSPGQPLNANSNSSMGYFSYPGVFPVSGF 1006 Query: 297 IGPS-----------SSSADMVPPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHDHPRAN 443 G + SS DM+ N LP + H NT + L +N P N Sbjct: 1007 SGNASNGYAMNNDDLSSQFDMLNFNNGTRLSLPQLSLTNHNNTTMEL-VNNVGSSQPHTN 1065 Query: 444 NNN 452 NNN Sbjct: 1066 NNN 1068
>TRI34_HUMAN (Q9BYJ4) Tripartite motif protein 34 (Interferon-responsive finger| protein 1) (RING finger protein 21) Length = 488 Score = 31.6 bits (70), Expect = 1.9 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 + + +CP+C+ L +P S CGH C Sbjct: 10 QEEVTCPICLELLTEPLSLDCGHSLC 35
>TRI10_PANTR (Q7YR32) Tripartite motif protein 10 (RING finger protein 9)| (B30-RING finger protein) Length = 481 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 495 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 + S A V + +E +CP+C L +P + CGH FC Sbjct: 1 MASAASVTSLADE--VNCPICQGTLREPVTIDCGHNFC 36
>TRI10_HUMAN (Q9UDY6) Tripartite motif protein 10 (RING finger protein 9)| (B30-RING finger protein) Length = 481 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 495 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 + S A V + +E +CP+C L +P + CGH FC Sbjct: 1 MASAASVTSLADE--VNCPICQGTLREPVTIDCGHNFC 36
>PEX10_YEAST (Q05568) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 337 Score = 31.6 bits (70), Expect = 1.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E C +C+ + DPS CGH+FC Sbjct: 281 EASRKCILCLMNMSDPSCAPCGHLFC 306
>PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 326 Score = 31.6 bits (70), Expect = 1.9 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C+ E P++T CGH+FC Sbjct: 273 CTLCLEERRHPTATPCGHLFC 293
>PEX10_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (RING finger protein 69) Length = 326 Score = 31.6 bits (70), Expect = 1.9 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C+ E P++T CGH+FC Sbjct: 273 CTLCLEERRHPTATPCGHLFC 293
>Y170_BUCBP (Q89AS2) Hypothetical protein bbp_170 (yba2)| Length = 279 Score = 31.6 bits (70), Expect = 1.9 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 10/148 (6%) Frame = +3 Query: 144 KTLSARNQQNQ----QNLASSRQIA----SSPGHGTMILTPGITQGASENSRMSYVTGNI 299 K + A NQ N+ ++ S R I ++ G T +L S NS +++G++ Sbjct: 97 KEIDACNQGNKAGNHKDDISKRPIMDCLNNNVGKTTSVLGRETIYNTSNNSMSGFLSGSL 156 Query: 300 GPSSSSAD-MVPPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHDHPRANNNNLMIDTVDI 476 ++ A MV N M L + P+E + +S P D NNN+ D D+ Sbjct: 157 QTAAGVAGGMVMANLLMN-LFQHKRPEEEMIDQISHNPTPVSADSDDLVNNNMNNDKHDV 215 Query: 477 PATNRLLKSRAPVKEVRNEPKF-SCPVC 557 +++ + + V+N+ + P+C Sbjct: 216 ASSDYINDEHEYGEHVKNDHQLHDSPLC 243
>BRE1_CANAL (Q5A4X0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 681 Score = 31.6 bits (70), Expect = 1.9 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +3 Query: 483 TNRLLKS-RAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 TN LL+ ++ +R+ K C VC D + T+CGH+FC Sbjct: 609 TNSLLQEDEQQLEALRSIAK--CSVCSKNWKDTAITVCGHVFC 649
>ZN179_HUMAN (Q9ULX5) Zinc finger protein 179 (Brain finger protein) (RING| finger protein 112) Length = 632 Score = 31.6 bits (70), Expect = 1.9 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +C +C+ L DP S CGH FC Sbjct: 56 TCSICLERLRDPISLDCGHDFC 77
>BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 691 Score = 31.2 bits (69), Expect = 2.5 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C VC D + T+CGH+FC Sbjct: 639 CSVCSKNWKDTAITVCGHVFC 659
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 31.2 bits (69), Expect = 2.5 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 21/127 (16%) Frame = +3 Query: 291 GNIGPSSSSADMVPPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHDHP-RANNNNLM--- 458 G+ GP S+SA PP P++ V T++S+G + Q RA NN+L Sbjct: 709 GSSGPGSTSAAADPP------------PEDCVTTIVSMGFSRDQALKALRATNNSLERAV 756 Query: 459 ------IDTVDIPATNRLLKSRA---------PV-KEVRNEP-KFSCPVCMNELVDPSST 587 ID +D A + + R+ PV +VR+ P K+ ++ + +ST Sbjct: 757 DWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHM--GTST 814 Query: 588 ICGHIFC 608 +CGH C Sbjct: 815 MCGHYVC 821
>CWC24_CRYNE (Q5KB05) Pre-mRNA-splicing factor CWC24| Length = 329 Score = 31.2 bits (69), Expect = 2.5 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%) Frame = +3 Query: 513 VKEVRNEPK-----FSCPVCMNELVDPSSTICGHIFC 608 V+EV E + F+C +C P T CGH FC Sbjct: 221 VREVEEEDEEEEVPFACLICRQPFTQPVVTKCGHYFC 257
>LNX2_HUMAN (Q8N448) Ligand of Numb-protein X 2 (Numb-binding protein 2) (PDZ| domain-containing RING finger protein 1) Length = 690 Score = 31.2 bits (69), Expect = 2.5 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C+ L+ P T CGH FC Sbjct: 50 CHICLQPLLQPLDTPCGHTFC 70
>TRAF3_MOUSE (Q60803) TNF receptor-associated factor 3 (CD40 receptor-associated| factor 1) (CRAF1) (TRAFAMN) Length = 567 Score = 31.2 bits (69), Expect = 2.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E K+ C C L +P T CGH FC Sbjct: 47 EDKYKCEKCRLVLCNPKQTECGHRFC 72
>TRI40_RAT (Q6MFY8) Tripartite motif protein 40 (RING finger protein 35)| Length = 247 Score = 31.2 bits (69), Expect = 2.5 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 CP+C++ L + ST C H+FC Sbjct: 12 CPICLDPLKEAVSTDCRHLFC 32
>TRI25_HUMAN (Q14258) Tripartite motif protein 25 (Zinc finger protein 147)| (Estrogen-responsive finger protein) (Efp) (RING finger protein 147) Length = 630 Score = 31.2 bits (69), Expect = 2.5 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 + SC +C+ +P +T CGH FC Sbjct: 10 ELSCSICLEPFKEPVTTPCGHNFC 33
>PEX10_SCHPO (Q9UUF0) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 306 Score = 31.2 bits (69), Expect = 2.5 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +CM + P++T CGHIFC Sbjct: 256 CSLCMEFIHCPAATECGHIFC 276
>LNX2_MOUSE (Q91XL2) Ligand of Numb-protein X 2 (Numb-binding protein 2)| Length = 687 Score = 31.2 bits (69), Expect = 2.5 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C+ L+ P T CGH FC Sbjct: 51 CHICLQPLLQPLDTPCGHTFC 71
>TRI25_MOUSE (Q61510) Tripartite motif protein 25 (Zinc finger protein 147)| (Estrogen-responsive finger protein) (Efp) Length = 634 Score = 30.8 bits (68), Expect = 3.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 + SC VC+ +P +T CGH FC Sbjct: 10 ELSCSVCLELFKEPVTTPCGHNFC 33
>TRI10_MOUSE (Q9WUH5) Tripartite motif protein 10 (RING finger protein 9)| (Hematopoietic RING finger 1) Length = 489 Score = 30.8 bits (68), Expect = 3.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +CP+C L +P + CGH FC Sbjct: 15 NCPICQGTLREPVTIDCGHNFC 36
>TRAF7_HUMAN (Q6Q0C0) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-) (TNF| receptor-associated factor 7) (Ring finger and WD repeat domain 1) (RING finger protein 119) Length = 670 Score = 30.8 bits (68), Expect = 3.2 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 K C +C + DP T CGH FC Sbjct: 128 KLCCQLCCSVFKDPVITTCGHTFC 151
>TRI30_MOUSE (P15533) Tripartite motif protein 30 (Down regulatory protein of| interleukin 2 receptor) Length = 496 Score = 30.8 bits (68), Expect = 3.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +CP+C+ L +P S C H FC Sbjct: 14 TCPICLELLKEPVSADCNHSFC 35
>TRI50_PIG (Q865W2) Tripartite motif protein 50| Length = 486 Score = 30.8 bits (68), Expect = 3.2 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E + CPVC+ +P CGH +C Sbjct: 11 EDRLQCPVCLEVFKEPLMLQCGHSYC 36
>NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)| Length = 610 Score = 30.8 bits (68), Expect = 3.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 + +CP+C+ DP CGH FC Sbjct: 143 ELTCPLCVELFKDPVMVACGHNFC 166
>TRAF5_HUMAN (O00463) TNF receptor-associated factor 5 (RING finger protein 84)| Length = 557 Score = 30.8 bits (68), Expect = 3.2 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 525 RNEPKFSCPVCMNELVDPSSTICGHIFC 608 R E ++ C C + L +P T CGH FC Sbjct: 38 RLEERYKCAFCHSVLHNPHQTGCGHRFC 65
>SM3L2_ARATH (Q9FNI6) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 2 (EC 3.6.1.-) (SMARCA3-like protein 2) Length = 1029 Score = 30.8 bits (68), Expect = 3.2 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 513 VKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 V+E+R + CP+C+ L D T C H C Sbjct: 783 VEELRKGEQGECPICLEALEDAVLTPCAHRLC 814
>TRI41_HUMAN (Q8WV44) Tripartite motif protein 41| Length = 630 Score = 30.8 bits (68), Expect = 3.2 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 510 PVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 PV+ ++ E C +C++ DP S CGH FC Sbjct: 10 PVQTLQEEAV--CAICLDYFTDPVSIGCGHNFC 40
>NF7B_XENLA (Q92021) Nuclear factor 7, brain (xNF7) (xNF7-B)| Length = 609 Score = 30.8 bits (68), Expect = 3.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 + +CP+C+ DP CGH FC Sbjct: 142 ELTCPLCVELFKDPVMVACGHNFC 165
>TRAF7_MOUSE (Q922B6) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-) (TNF| receptor-associated factor 7) Length = 594 Score = 30.8 bits (68), Expect = 3.2 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 537 KFSCPVCMNELVDPSSTICGHIFC 608 K C +C + DP T CGH FC Sbjct: 52 KLCCQLCCSVFKDPVITTCGHTFC 75
>KIC1_YEAST (P38692) Serine/threonine-protein kinase KIC1 (EC 2.7.11.1) (Kinase| that interacts with CDC31) (N-rich kinase 1) Length = 1080 Score = 30.8 bits (68), Expect = 3.2 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 16/151 (10%) Frame = +3 Query: 180 NLASSRQIA-SSPGHGTMILT--------PGITQGASENSRMS-YVTGNIGPSSSSADMV 329 N A+S Q+ ++PG+ T + T P G S N + + T NIG +S+ ++ Sbjct: 699 NTANSTQMGITNPGNVTKLSTHKASSPSRPLFGVGTSPNRKPAGSPTQNIGHNSTHTNLA 758 Query: 330 PPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHDHPRANNNNLMIDTVDIPATNRLLKSRA 509 PP T + D + L S+ + T + ++NNL T +N SR Sbjct: 759 PPPTMKPMANSKDNKDILLQPLNSIPSSSTLNTISGNSSNNL---TSSNYFSNEKEGSRV 815 Query: 510 PVKEVRNEPKFS------CPVCMNELVDPSS 584 RN P PV N+L+DP++ Sbjct: 816 NGDFKRNNPNLKLQMPLPTPVVRNKLLDPNT 846
>TRAF3_HUMAN (Q13114) TNF receptor-associated factor 3 (CD40 receptor-associated| factor 1) (CRAF1) (CD40-binding protein) (CD40BP) (LMP1-associated protein) (LAP1) (CAP-1) Length = 568 Score = 30.4 bits (67), Expect = 4.2 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E K+ C C L P T CGH FC Sbjct: 48 EDKYKCEKCHLVLCSPKQTECGHRFC 73
>RAG1_XENLA (Q91829) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1045 Score = 30.4 bits (67), Expect = 4.2 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 SC VC + L DP T C H+FC Sbjct: 293 SCLVCEHILSDPVQTSCKHLFC 314
>SM3L3_ARATH (Q9FIY7) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 3 (EC 3.6.1.-) (SMARCA3-like protein 3) Length = 1277 Score = 30.4 bits (67), Expect = 4.2 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Frame = +3 Query: 501 SRAPVKEV----RNEPKFSCPVCMNELVDPSSTICGHIFC 608 SRA ++EV R+ CP+C+ DP T C H C Sbjct: 1021 SRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMC 1060
>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (hCOP1) Length = 731 Score = 30.4 bits (67), Expect = 4.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 540 FSCPVCMNELVDPSSTICGHIFC 608 F CP+C + + + T CGH FC Sbjct: 134 FVCPICFDMIEEAYMTKCGHSFC 156
>PEX10_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10)| (Pex10p) (PER8) Length = 381 Score = 30.4 bits (67), Expect = 4.2 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C++ P++T CGH+FC Sbjct: 327 CTLCLSTRQHPTATPCGHVFC 347
>CF055_MOUSE (Q9CR26) Protein C6orf55 homolog| Length = 309 Score = 30.4 bits (67), Expect = 4.2 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +3 Query: 249 TQGASENSRMSYVTGNIGPSSSSADMVPPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHD 428 TQ +S +Y N+ P S S +PP + P E P H + S + P+ Sbjct: 188 TQPPQPSSSSAYDPSNLAPGSYSGIQIPPGAHAPANTPAEVP--HSTGVTSNAVQPSPQT 245 Query: 429 HPRA 440 P A Sbjct: 246 VPAA 249
>TRI31_HUMAN (Q9BZY9) Tripartite motif protein 31| Length = 425 Score = 30.0 bits (66), Expect = 5.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 CP+C++ L P + CGH FC Sbjct: 16 CPICLDILQKPVTIDCGHNFC 36
>YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2 intergenic| region Length = 758 Score = 30.0 bits (66), Expect = 5.5 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Frame = +3 Query: 120 EPQLQYAIKTLSARNQQNQQNLASSRQIASSPGHGTMILTPG-ITQGASENSRMSYVTGN 296 + Q + + A NQQ Q + +P + TM L PG + EN M N Sbjct: 493 QQQYMHMMMQRMAANQQLQNSAFPPDTNRIAPANNTMPLQPGNMGSPVIENPGMRQT--N 550 Query: 297 IGPSSSSADMVPPNTNMGTLLPGEAPD------EHVNTLLSLGMNPTQHDHPRANNNN 452 + +M P N+ + + AP +H T S+ N + P NNNN Sbjct: 551 PSGQNPMINMQPLYQNVSSAMHAFAPQQQFHLPQHYKTNTSVPQNDSTSVFPLPNNNN 608
>PRT1_ARATH (Q8LBL5) Ubiquitin protein ligase PRT1 (EC 6.3.2.-) (Proteolysis 1| protein) Length = 410 Score = 30.0 bits (66), Expect = 5.5 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +3 Query: 486 NRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 N LLK K++ + C C LV P CGH++C Sbjct: 173 NELLKDNKVSKQISKDDLL-CSACKELLVRPVVLNCGHVYC 212
>TRIM8_MOUSE (Q99PJ2) Tripartite motif protein 8 (RING finger protein 27)| (Glioblastoma-expressed RING finger protein) Length = 551 Score = 30.0 bits (66), Expect = 5.5 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E + CP+C++ V+P C H FC Sbjct: 10 EEELICPICLHVFVEPVQLPCKHNFC 35
>TRIM8_HUMAN (Q9BZR9) Tripartite motif protein 8 (RING finger protein 27)| (Glioblastoma-expressed RING finger protein) Length = 551 Score = 30.0 bits (66), Expect = 5.5 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E + CP+C++ V+P C H FC Sbjct: 10 EEELICPICLHVFVEPVQLPCKHNFC 35
>TRI27_MOUSE (Q62158) Zinc-finger protein RFP (Ret finger protein) (Tripartite| motif protein 27) Length = 513 Score = 30.0 bits (66), Expect = 5.5 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +CPVC+ V+P CGH C Sbjct: 15 TCPVCLQYFVEPMMLDCGHNIC 36
>TRI52_HUMAN (Q96A61) Tripartite motif protein 52 (RING finger protein 102)| Length = 297 Score = 30.0 bits (66), Expect = 5.5 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C++ DP S CGH FC Sbjct: 20 CAICLDYFKDPVSISCGHNFC 40
>TRAF5_MOUSE (P70191) TNF receptor-associated factor 5| Length = 558 Score = 30.0 bits (66), Expect = 5.5 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E ++ C C + L +P T CGH FC Sbjct: 40 EERYKCAFCHSVLHNPHQTGCGHRFC 65
>CWC24_USTMA (Q4P400) Pre-mRNA-splicing factor CWC24| Length = 355 Score = 30.0 bits (66), Expect = 5.5 Identities = 10/30 (33%), Positives = 15/30 (50%) Frame = +3 Query: 519 EVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 + ++ F+C +C DP T C H FC Sbjct: 255 DTEDDIPFACLICRKAFTDPVVTRCAHYFC 284
>ZN179_RAT (O70418) Zinc finger protein 179 (Brain finger protein)| Length = 631 Score = 30.0 bits (66), Expect = 5.5 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +C +C+ L +P S CGH FC Sbjct: 56 TCSICLERLREPISLDCGHDFC 77
>R1AB_IBVBC (Q91QT2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87; p195 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like proteinase (EC 3.4.22.-) (3CL- Length = 6629 Score = 30.0 bits (66), Expect = 5.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 313 LVQTWFLRTPTWVPCCQGKLLMSM*THFYLW 405 LV T+ L PTW+ CC ++ M T +LW Sbjct: 2643 LVFTFGLIVPTWLACCYLGFIIYMYTPLFLW 2673
>R1AB_IBVB (P27920) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87; p195 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like proteinase (EC 3.4.22.-) (3CL-P Length = 6629 Score = 30.0 bits (66), Expect = 5.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 313 LVQTWFLRTPTWVPCCQGKLLMSM*THFYLW 405 LV T+ L PTW+ CC ++ M T +LW Sbjct: 2643 LVFTFGLIVPTWLACCYLGFIIYMYTPLFLW 2673
>SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 1 (EC 3.6.1.-) (SMARCA3-like protein 1) Length = 881 Score = 29.6 bits (65), Expect = 7.2 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +3 Query: 513 VKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 V +++ F CP+C++ + T C HIFC Sbjct: 624 VAALQDGEDFDCPICISPPTNIIITRCAHIFC 655
>RNF4_HUMAN (P78317) RING finger protein 4| Length = 190 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 7/29 (24%) Frame = +3 Query: 543 SCPVCMN---ELVDPS----STICGHIFC 608 SCP+CM+ E+V ST CGH+FC Sbjct: 131 SCPICMDGYSEIVQNGRLIVSTECGHVFC 159
>RAD5_KLULA (Q6CJM4) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1114 Score = 29.6 bits (65), Expect = 7.2 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%) Frame = +3 Query: 534 PKFSCPVCMNELVDPSSTI----CGHIFC 608 P F C +C E ++P S + C H FC Sbjct: 854 PSFECAICTTECIEPLSAVSITECLHTFC 882
>YNN1_CAEEL (Q03605) Hypothetical RING finger protein T02C1.1 in chromosome III| Length = 160 Score = 29.6 bits (65), Expect = 7.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 540 FSCPVCMNELVDPSSTICGHIFC 608 F C VC++ V+P CGH +C Sbjct: 6 FCCAVCLDFFVEPCIIECGHSYC 28
>CWC24_EMENI (Q5AVC5) Pre-mRNA-splicing factor cwc24| Length = 332 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +3 Query: 516 KEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 +++ N P F+C +C +P T CGH FC Sbjct: 232 EQLENIP-FACIICKKPYQNPIVTKCGHYFC 261
>CWC24_ASPFU (Q4WUA0) Pre-mRNA-splicing factor cwc24| Length = 339 Score = 29.6 bits (65), Expect = 7.2 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +3 Query: 516 KEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 +E+ F+C +C + P T CGH FC Sbjct: 243 EELLESIPFACIICKSSYKSPIVTKCGHYFC 273
>YZLL_CAEEL (Q93847) Hypothetical WD-repeat protein K04G11.4| Length = 395 Score = 29.6 bits (65), Expect = 7.2 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Frame = +3 Query: 189 SSRQIASSPGHGTMILTPGITQGASENSRMSYVTGNIGPSSSSADMVPPNTNMGTLLP-- 362 S + +PGHG I G G + ++ GPS SSA PN + L P Sbjct: 38 SPAMVLPTPGHGMGIPQFGPV-GLPAQASTPMLSSTPGPSYSSAPTPMPNPSAANLWPTY 96 Query: 363 ---GEAPDEHVNTLLSLGMNP 416 E P+ H ++ + +P Sbjct: 97 KLVAEIPNAHKKSISGIKFSP 117
>PEX10_PICPA (Q92265) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (Peroxisome assembly protein PAS7) Length = 419 Score = 29.6 bits (65), Expect = 7.2 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E C +C++ + +P++ CGH FC Sbjct: 293 ESSRQCMLCLSYMTNPTAANCGHCFC 318
>CWC24_YARLI (Q6CB23) Pre-mRNA-splicing factor CWC24| Length = 256 Score = 29.6 bits (65), Expect = 7.2 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +3 Query: 543 SCPVCMNELVDPSSTICGHIFC 608 +CP+C E P T C H FC Sbjct: 205 TCPICQGEFKSPVVTQCCHYFC 226
>YB1B_SCHPO (P87176) Hypothetical RING finger protein C3D6.11c in chromosome II| Length = 269 Score = 29.6 bits (65), Expect = 7.2 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +3 Query: 540 FSCPVCMNELVDPSSTICGHIFC 608 + C +C++ + S T CGHIFC Sbjct: 204 YKCVICLDSPENLSCTPCGHIFC 226
>RNF4_RAT (O88846) RING finger protein 4 (SNURF)| Length = 194 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 7/29 (24%) Frame = +3 Query: 543 SCPVCMN---ELVDPS----STICGHIFC 608 SCP+CM+ E+V ST CGH+FC Sbjct: 135 SCPICMDGYSEIVQNGRLIVSTECGHVFC 163
>RNF4_MOUSE (Q9QZS2) RING finger protein 4| Length = 194 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 7/29 (24%) Frame = +3 Query: 543 SCPVCMN---ELVDPS----STICGHIFC 608 SCP+CM+ E+V ST CGH+FC Sbjct: 135 SCPICMDGYSEIVQNGRLIVSTECGHVFC 163
>CWC24_YEAST (P53769) Pre-mRNA-splicing factor CWC24 (Complexed with CEF1| protein 24) Length = 259 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +3 Query: 501 SRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 S+A ++ P F C +C + P T CGH FC Sbjct: 185 SKAVTLDLEKIP-FKCTLCKEDYKSPVVTNCGHYFC 219
>RAG1_BRARE (O13033) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1057 Score = 29.3 bits (64), Expect = 9.4 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 483 TNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 + +L+ + P +R +C VC + L DP + C H+FC Sbjct: 278 STKLIPTEVPADLIR---AVTCQVCDHLLSDPVQSPCRHLFC 316
>FDHD_COREF (Q8FS66) Protein fdhD homolog| Length = 277 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 11/67 (16%) Frame = +3 Query: 171 NQQNLASSRQIASSPGHGT-----MILTPGITQGASENSRMSYVTGNIGPSSSSA----- 320 N NL ++ + +PGH ++L G+ + ASE S Y G +GP + + Sbjct: 40 NGTNLTTTMR---TPGHDIELVHGLLLAEGLIRDASEVSTARYCAGAVGPDNQNTYNVLE 96 Query: 321 -DMVPPN 338 D+VP N Sbjct: 97 LDVVPAN 103
>NUPL1_HUMAN (Q9BVL2) Nucleoporin p58/p45 (Nucleoporin-like 1)| Length = 599 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 255 GASENSRMSYVTGNIGPSSSSADMVPPNTNMGTLLPGEAP 374 GAS N + GN+G +S+ A P++ GT L G P Sbjct: 33 GASSNPSVGLNFGNLGSTSTPATTSAPSSGFGTGLFGSKP 72
>K1196_HUMAN (Q96KM6) Zinc finger protein KIAA1196| Length = 892 Score = 29.3 bits (64), Expect = 9.4 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = +3 Query: 291 GNIGPSS---SSADMVPPNTNMGTLLPGEAPDEHVNTLLSLG-MNPTQHDHPRANN 446 G GPSS SSA + +T+ G+L PG P + L + G +P + D R + Sbjct: 365 GEYGPSSMGQSSAFQLSADTSSGSLSPGSRPSGGMEALKAAGPASPPEEDPERTKH 420
>TRI50_MOUSE (Q810I2) Tripartite motif protein 50| Length = 483 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +3 Query: 504 RAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFC 608 R V E++++ CP+C+ +P CGH +C Sbjct: 4 RLTVPELQDQ--LQCPICLEVFKEPLMLQCGHSYC 36
>TRAF2_MOUSE (P39429) TNF receptor-associated factor 2| Length = 501 Score = 29.3 bits (64), Expect = 9.4 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +3 Query: 525 RNEPKFSCPVCMNELVDPSSTICGHIFC 608 R E K+ C C N L P CGH +C Sbjct: 27 RLEAKYLCSACKNILRRPFQAQCGHRYC 54
>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (TNF-response element-binding protein) (P113) Length = 1003 Score = 29.3 bits (64), Expect = 9.4 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C++ L P T C H+FC Sbjct: 754 CAICLDSLTFPVITHCAHVFC 774
>SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (RUSH-1) Length = 1005 Score = 29.3 bits (64), Expect = 9.4 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C++ L P T C H+FC Sbjct: 757 CAICLDSLTVPVITHCAHVFC 777
>SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (DNA binding protein/plasminogen activator inhibitor 1 regulator) (Helicase-like tran Length = 1009 Score = 29.3 bits (64), Expect = 9.4 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 546 CPVCMNELVDPSSTICGHIFC 608 C +C++ L P T C H+FC Sbjct: 760 CAICLDSLTVPVITHCAHVFC 780
>TRI18_MUSSP (P82457) Midline-1 (Tripartite motif protein 18)| Length = 667 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +3 Query: 531 EPKFSCPVCMNELVDPSSTICGHIFC 608 E + +CP+C+ L DP C H C Sbjct: 5 ESELTCPICLELLEDPLLLPCAHSLC 30 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,328,703 Number of Sequences: 219361 Number of extensions: 1787838 Number of successful extensions: 5469 Number of sequences better than 10.0: 146 Number of HSP's better than 10.0 without gapping: 5270 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5463 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
