ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd16a12 |
|---|---|
| Clone Library Name | barley_pub |
>WHI3_YEAST (P34761) Protein WHI3| Length = 661 Score = 53.1 bits (126), Expect = 7e-07 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Frame = +2 Query: 377 PEPPLPPDAS---NTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVL 547 P P P D + NTLY+ LP++ T +E+ +F GFR + NK + G + Sbjct: 525 PPPANPADQNPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPM 584 Query: 548 CFVDFDSPAQATIALEALQG 607 CFV+FD + AT AL L G Sbjct: 585 CFVEFDDVSFATRALAELYG 604
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 52.4 bits (124), Expect = 1e-06 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Frame = +2 Query: 395 PDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNK-ESRHPGGDPHV-LCFVDFDS 568 P ++TL+++ L + T + +F+P GF R+ K + + PG + FVDF + Sbjct: 593 PVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRT 652 Query: 569 PAQATIALEALQGYKFDEHD 628 AQA AL A+ GYK D+H+ Sbjct: 653 KAQAQAALAAMDGYKLDQHE 672
>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 286 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Frame = +2 Query: 383 PPLPPDASNT----LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 PP P + N L++ LP +S +F F GF+EVRLV PG H + Sbjct: 200 PPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV------PGR--HDIA 251 Query: 551 FVDFDSPAQATIALEALQGYKFDEHD 628 FV+FD+ QA A +ALQG+K +++ Sbjct: 252 FVEFDNEVQAGAARDALQGFKITQNN 277
>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 281 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Frame = +2 Query: 383 PPLPPDASNT----LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 PP P + N L++ LP +S +F F GF+EVRLV PG H + Sbjct: 195 PPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV------PGR--HDIA 246 Query: 551 FVDFDSPAQATIALEALQGYKFDEHD 628 FV+FD+ QA A +ALQG+K +++ Sbjct: 247 FVEFDNEVQAGAARDALQGFKITQNN 272
>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = +2 Query: 371 ARPEPPLPPDASN-TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVL 547 A P P +P N L++ LP +S +F F GF+EVRLV PG H + Sbjct: 138 AAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV------PG--RHDI 189 Query: 548 CFVDFDSPAQATIALEALQGYK 613 FV+F++ QA A +ALQG+K Sbjct: 190 AFVEFENDGQAGAARDALQGFK 211
>RBPMS_HUMAN (Q93062) RNA-binding protein with multiple splicing (RBP-MS)| Length = 196 Score = 51.2 bits (121), Expect = 2e-06 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 7/94 (7%) Frame = +2 Query: 359 MGYGARPEPPLPPDASN-------TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKES 517 M G + E P +N TL++ GLP + RE+ +FRPF G+ E L+ S Sbjct: 1 MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTS 59 Query: 518 RHPGGDPHVLCFVDFDSPAQATIALEALQGYKFD 619 + P G FV FDS ++A A AL G +FD Sbjct: 60 KQPVG------FVSFDSRSEAEAAKNALNGIRFD 87
>RBPMS_MOUSE (Q9WVB0) RNA-binding protein with multiple splicing (RBP-MS)| (HEart, RRM Expressed Sequence) (Hermes) Length = 197 Score = 50.8 bits (120), Expect = 3e-06 Identities = 31/80 (38%), Positives = 43/80 (53%) Frame = +2 Query: 380 EPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVD 559 E L + TL++ GLP + RE+ +FRPF G+ E L+ S+ P G FV Sbjct: 15 EANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVS 67 Query: 560 FDSPAQATIALEALQGYKFD 619 FDS ++A A AL G +FD Sbjct: 68 FDSRSEAEAAKNALNGIRFD 87
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 50.1 bits (118), Expect = 6e-06 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = +2 Query: 377 PEPPLPPDASN-TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCF 553 P P +P N L++ LP +S +F F GF+EVRLV PG H + F Sbjct: 140 PNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV------PG--RHDIAF 191 Query: 554 VDFDSPAQATIALEALQGYK 613 V+F++ QA A +ALQG+K Sbjct: 192 VEFENDGQAGAARDALQGFK 211
>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 282 Score = 49.7 bits (117), Expect = 7e-06 Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 12/111 (10%) Frame = +2 Query: 326 MMGVVGMDSRAMGYGARPE--------PPLPPDASNT----LYIEGLPANCTRREVSHIF 469 MM GM M G P P+ P + N L++ LP +S +F Sbjct: 169 MMPPPGMAPGQMPPGGMPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLF 228 Query: 470 RPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIALEALQGYKFDE 622 F GF+EVRLV PG H + FV+FD+ QA A E+LQG+K + Sbjct: 229 NQFPGFKEVRLV------PGR--HDIAFVEFDNEVQAGAARESLQGFKITQ 271
>RBPMS_CHICK (Q9W6I1) RNA-binding protein with multiple splicing homolog| (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes) Length = 200 Score = 49.3 bits (116), Expect = 9e-06 Identities = 30/70 (42%), Positives = 39/70 (55%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIA 589 TL++ GLP + RE+ +FRPF G+ E L+ S+ P G FV FDS A A A Sbjct: 23 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDSRAGAEAA 75 Query: 590 LEALQGYKFD 619 AL G +FD Sbjct: 76 KNALNGIRFD 85
>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog| (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes) Length = 196 Score = 47.8 bits (112), Expect = 3e-05 Identities = 29/70 (41%), Positives = 39/70 (55%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIA 589 TL++ GLP + RE+ +FRPF G+ E L+ S+ P G FV FD+ A A A Sbjct: 21 TLFVSGLPIDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDNRAGAEAA 73 Query: 590 LEALQGYKFD 619 AL G +FD Sbjct: 74 KNALNGIRFD 83
>SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1-A) (Sex determination protein snf) Length = 216 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/74 (36%), Positives = 38/74 (51%) Frame = +2 Query: 392 PPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSP 571 PP+ L++ LP +S +F F GF+EVRLV H + FV+F + Sbjct: 139 PPN--QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNR--------HDIAFVEFTTE 188 Query: 572 AQATIALEALQGYK 613 Q+ A EALQG+K Sbjct: 189 LQSNAAKEALQGFK 202
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +2 Query: 401 ASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNK-ESRHPGGDPHV-LCFVDFDSPA 574 A+ TL+I+ L + T + + FRP GF R+ K + ++PG + F DF + A Sbjct: 590 ATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKA 649 Query: 575 QATIALEALQGYKFDEH 625 QA AL + GY D H Sbjct: 650 QAQAALAVMNGYTLDRH 666
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/71 (29%), Positives = 40/71 (56%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 L+I GLP +CT+ E+ I + +++RLV + G P L +V++++ +QA+ A+ Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAV 858 Query: 593 EALQGYKFDEH 625 + G E+ Sbjct: 859 MKMDGMTIKEN 869
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/71 (29%), Positives = 40/71 (56%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 L+I GLP +CT+ E+ I + +++RLV + G P L +V++++ +QA+ A+ Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAV 876 Query: 593 EALQGYKFDEH 625 + G E+ Sbjct: 877 MKMDGMTIKEN 887
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/71 (29%), Positives = 40/71 (56%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 L+I GLP +CT+ E+ I + +++RLV + G P L +V++++ +QA+ A+ Sbjct: 803 LFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAV 858 Query: 593 EALQGYKFDEH 625 + G E+ Sbjct: 859 MKMDGMTIREN 869
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/70 (28%), Positives = 38/70 (54%) Frame = +2 Query: 407 NTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATI 586 N +++ L C++ E+ +F PF ++VRLV+K ++ G + +V+F+ P +A Sbjct: 724 NKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKG----IAYVEFEKPGEAQR 779 Query: 587 ALEALQGYKF 616 A+ G F Sbjct: 780 AVAGRDGCLF 789
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +2 Query: 395 PDASNT--LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDS 568 P SN +Y+ LP + ++V +F + R++ L N+ GG P FV+F+ Sbjct: 9 PAGSNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRR----GGPP--FAFVEFED 62 Query: 569 PAQATIALEALQGYKFD 619 P A A+ A GY +D Sbjct: 63 PRDAEDAVYARDGYDYD 79
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/74 (32%), Positives = 34/74 (45%) Frame = +2 Query: 389 LPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDS 568 LPP+ + LYI+ LP T E+ IF F R++R+ N + FV ++ Sbjct: 13 LPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNT------AETRGTAFVVYED 66 Query: 569 PAQATIALEALQGY 610 A A E L GY Sbjct: 67 IFDAKTACEHLSGY 80
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +2 Query: 341 GMDSRAMGYGARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLV-NKES 517 G A G+G+R + LP + T Y+ LP N + ++ IF+ + R VRLV +K++ Sbjct: 19 GSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKD-LSIRSVRLVRDKDT 77 Query: 518 RHPGGDPHVLCFVDFD 565 G C+V+FD Sbjct: 78 DKFKG----FCYVEFD 89
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +2 Query: 341 GMDSRAMGYGARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLV-NKES 517 G A G+G+R + LP + T Y+ LP N + ++ IF+ + R VRLV +K++ Sbjct: 19 GSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKD-LSIRSVRLVRDKDT 77 Query: 518 RHPGGDPHVLCFVDFD 565 G C+V+FD Sbjct: 78 DKFKG----FCYVEFD 89
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 38.9 bits (89), Expect = 0.013 Identities = 19/70 (27%), Positives = 33/70 (47%) Frame = +2 Query: 398 DASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQ 577 D+ + +YI LP N +V + +PF +L+ + G CF +F +P+ Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIA---DGSSKGFCFCEFKNPSD 363 Query: 578 ATIALEALQG 607 A +A+ L G Sbjct: 364 AEVAISGLDG 373
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 38.5 bits (88), Expect = 0.017 Identities = 24/75 (32%), Positives = 34/75 (45%) Frame = +2 Query: 401 ASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQA 580 +S T+Y+ LP + REV +F + ++ L R PG FV+FD A Sbjct: 5 SSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL-KVPPRPPG-----YAFVEFDDARDA 58 Query: 581 TIALEALQGYKFDEH 625 A+ GY FD H Sbjct: 59 EDAIHGRDGYDFDGH 73
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 +Y+ LP + ++V +F + R++ L N+ GG P FV+F+ P A A+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRR----GGPP--FAFVEFEDPRDAEDAV 70 Query: 593 EALQGYKFD 619 GY +D Sbjct: 71 YGRDGYDYD 79
>CPO_DROME (Q01617) Protein couch potato| Length = 738 Score = 38.1 bits (87), Expect = 0.022 Identities = 25/70 (35%), Positives = 39/70 (55%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIA 589 TL++ GLP + RE+ +FR + G+ E L+ S++ G + FV F + A A A Sbjct: 452 TLFVSGLPMDAKPRELYLLFRAYEGY-EGSLLKVTSKN-GKTASPVGFVTFHTRAGAEAA 509 Query: 590 LEALQGYKFD 619 + LQG +FD Sbjct: 510 KQDLQGVRFD 519
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 37.7 bits (86), Expect = 0.029 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 +Y+ LP + +++ +F + R++ L N+ GG P FV+F+ P A A+ Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR----GGPP--FAFVEFEDPRDAEDAV 70 Query: 593 EALQGYKFD 619 GY +D Sbjct: 71 YGRDGYDYD 79
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 37.7 bits (86), Expect = 0.029 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 +Y+ LP + +++ +F + R++ L N+ GG P FV+F+ P A A+ Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR----GGPP--FAFVEFEDPRDAEDAV 70 Query: 593 EALQGYKFD 619 GY +D Sbjct: 71 YGRDGYDYD 79
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 37.7 bits (86), Expect = 0.029 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 +Y+ LP + +++ +F + R++ L N+ GG P FV+F+ P A A+ Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR----GGPP--FAFVEFEDPRDAEDAV 70 Query: 593 EALQGYKFD 619 GY +D Sbjct: 71 YGRDGYDYD 79
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 37.7 bits (86), Expect = 0.029 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 +Y+ LP + +++ +F + R++ L N+ GG P FV+F+ P A A+ Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR----GGPP--FAFVEFEDPRDAEDAV 70 Query: 593 EALQGYKFD 619 GY +D Sbjct: 71 YGRDGYDYD 79
>SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cell wall protein| 1) Length = 561 Score = 37.7 bits (86), Expect = 0.029 Identities = 25/77 (32%), Positives = 39/77 (50%) Frame = +2 Query: 377 PEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFV 556 P PP NT+Y+ LP + + E+ +F VG++ + R G P +CFV Sbjct: 418 PADQNPP--CNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCF-----RTKGNGP--MCFV 468 Query: 557 DFDSPAQATIALEALQG 607 +F++ A AL+ LQG Sbjct: 469 EFENIPYAMEALKNLQG 485
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 37.7 bits (86), Expect = 0.029 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 +Y+ LP + +++ +F + R++ L N+ GG P FV+F+ P A A+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR----GGPP--FAFVEFEDPRDAEDAV 71 Query: 593 EALQGYKFD 619 GY +D Sbjct: 72 YGRDGYDYD 80
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 37.4 bits (85), Expect = 0.037 Identities = 21/68 (30%), Positives = 35/68 (51%) Frame = +2 Query: 404 SNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQAT 583 S + ++ LP TR++V +F F + VR+ K + G FV+F P++A Sbjct: 711 SGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARG----FAFVEFLLPSEAE 766 Query: 584 IALEALQG 607 A++ LQG Sbjct: 767 NAMDQLQG 774
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 37.0 bits (84), Expect = 0.049 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHV--LCFVDFDSPAQATI 586 LY+ GLP T++E+ IF PF R++ ++ G D + F+ FD +AT Sbjct: 250 LYVSGLPKTMTQQELEAIFAPFGAIITSRIL----QNAGNDTQTKGVGFIRFDKREEATR 305 Query: 587 ALEALQG 607 A+ AL G Sbjct: 306 AIIALNG 312
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 37.0 bits (84), Expect = 0.049 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHV--LCFVDFDSPAQATI 586 LY+ GLP T++E+ IF PF R++ ++ G D + F+ FD +AT Sbjct: 286 LYVSGLPKTMTQQELEAIFAPFGAIITSRIL----QNAGNDTQTKGVGFIRFDKREEATR 341 Query: 587 ALEALQG 607 A+ AL G Sbjct: 342 AIIALNG 348
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 36.2 bits (82), Expect = 0.083 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 + ++ LP TR++V +F F + VR+ K + G FV+F P +A A+ Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARG----FAFVEFVLPKEAENAM 795 Query: 593 EALQG 607 + LQG Sbjct: 796 DQLQG 800
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 35.8 bits (81), Expect = 0.11 Identities = 24/81 (29%), Positives = 41/81 (50%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP + DA+ LYI GLP T+++V +F F R++ ++ G + Sbjct: 96 ARPSSEVIKDAN--LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTT---GLSRGVA 150 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD ++A A+ + G+K Sbjct: 151 FIRFDKRSEAEEAITSFNGHK 171
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 35.4 bits (80), Expect = 0.14 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +2 Query: 389 LPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRL 502 LPP+ + LY+ LP N T E+ IF + R++R+ Sbjct: 13 LPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRI 50
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Frame = +2 Query: 401 ASNTLYIEGLPANCTRREVSHIFRPFVGFREVR-LVNKESRHPGGDPHVLCFVDFDSPAQ 577 + LYI GLP N T +++ + +P+ + +++K + G FVDFDSPA Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKG----YGFVDFDSPAA 115 Query: 578 ATIALEALQ 604 A A+ AL+ Sbjct: 116 AQKAVSALK 124
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNK-ESRHPGGDPHV-LCFVDFDSPAQAT 583 T+Y++ L + + E +F+P G+ + K + + PG + FV+F A A Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAV 679 Query: 584 IALEALQGYKFDEHDRE 634 A+ A+ G+ D H E Sbjct: 680 AAMHAMNGFVLDGHKLE 696
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 + ++ LP TR++V +F F + VR+ K + G FV+F P +A A+ Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARG----FAFVEFLLPKEAENAM 809 Query: 593 EALQG 607 + LQG Sbjct: 810 DQLQG 814
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 34.7 bits (78), Expect = 0.24 Identities = 24/81 (29%), Positives = 41/81 (50%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP + DA+ LYI GLP T+++V +F F R++ ++ G + Sbjct: 96 ARPSSEVIKDAN--LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTT---GLSRGVA 150 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD ++A A+ + G+K Sbjct: 151 FIRFDKRSEAEEAITSFIGHK 171
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 34.7 bits (78), Expect = 0.24 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Frame = +2 Query: 404 SNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKE----SRHPGGDPHVLCFVDFDSP 571 S +Y+ LP +E+S F F +EVRL + SRH G F++F + Sbjct: 90 SGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYG-------FLEFVNK 142 Query: 572 AQATIALEALQGYKFDEH 625 A IA E++ Y H Sbjct: 143 EDAMIAQESMNNYLLMGH 160
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/75 (22%), Positives = 33/75 (44%) Frame = +2 Query: 398 DASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQ 577 + +Y+ LP++ +++ +F + RE+ L N+ P FV F+ P Sbjct: 12 EGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVP------FAFVRFEDPRD 65 Query: 578 ATIALEALQGYKFDE 622 A A+ GY + + Sbjct: 66 AEDAIYGRNGYDYGQ 80
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein| Length = 121 Score = 34.3 bits (77), Expect = 0.32 Identities = 21/74 (28%), Positives = 33/74 (44%) Frame = +2 Query: 389 LPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDS 568 LPP+ + LY+ LP T E+ IF F R++R+ N + FV ++ Sbjct: 9 LPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTP------ETRGTAFVVYED 62 Query: 569 PAQATIALEALQGY 610 A A + L G+ Sbjct: 63 IFDAKNACDHLSGF 76
>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 34.3 bits (77), Expect = 0.32 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +2 Query: 356 AMGYGARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVN 508 AM R LPP+ + LYI LP T E+ IF + R++R+ N Sbjct: 2 AMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN 52
>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 34.3 bits (77), Expect = 0.32 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +2 Query: 356 AMGYGARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVN 508 AM R LPP+ + LYI LP T E+ IF + R++R+ N Sbjct: 2 AMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN 52
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 33.9 bits (76), Expect = 0.41 Identities = 17/75 (22%), Positives = 32/75 (42%) Frame = +2 Query: 398 DASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQ 577 + +Y+ LP + +++ +F + RE+ L N+ P FV F+ P Sbjct: 11 EGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVP------FAFVRFEDPRD 64 Query: 578 ATIALEALQGYKFDE 622 A A+ GY + + Sbjct: 65 AEDAIYGRNGYDYGQ 79
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 33.9 bits (76), Expect = 0.41 Identities = 17/75 (22%), Positives = 32/75 (42%) Frame = +2 Query: 398 DASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQ 577 + +Y+ LP + +++ +F + RE+ L N+ P FV F+ P Sbjct: 11 EGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVP------FAFVRFEDPRD 64 Query: 578 ATIALEALQGYKFDE 622 A A+ GY + + Sbjct: 65 AEDAIYGRNGYDYGQ 79
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 33.9 bits (76), Expect = 0.41 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIAL 592 +Y+ LP + +EV IF + + V + K R P FV+F+ A A+ Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPA-----FAFVEFEDHRDAEDAV 63 Query: 593 EALQGYKFD 619 A GY+FD Sbjct: 64 RARDGYEFD 72
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 33.5 bits (75), Expect = 0.54 Identities = 47/213 (22%), Positives = 73/213 (34%), Gaps = 36/213 (16%) Frame = +2 Query: 86 RPDYGDGPGGQEMAGY-------------------YPRENAGYHSLRDNEAIGASYDRYL 208 +PDYG + +GY Y + YHS R+N Y + Sbjct: 107 QPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQREN------YSHHT 160 Query: 209 RNGMPSVAA-NEPSRXXXXXXXXXXXXXXXXSGYPVDDRR-MMGVVGMDSRAM------- 361 ++ V+ E +R GY D R M G G D Sbjct: 161 QDDRRDVSRYGEDNRGYGGSQGGGRGR----GGYDKDGRGPMTGSSGGDRGGFKNFGGHR 216 Query: 362 GYGARPEPPLPPDAS--NTLYIEGLPANCTRREVSHIFRPFVGFREVR------LVNKES 517 YG R + D S NT++++GL + +V F+ +G + ++N + Sbjct: 217 DYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQ-IGIIKTNKKTGKPMINLYT 275 Query: 518 RHPGGDPHVLCFVDFDSPAQATIALEALQGYKF 616 G P V FD P A A++ G +F Sbjct: 276 DKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEF 308
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 33.5 bits (75), Expect = 0.54 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Frame = +2 Query: 401 ASNTLYIEGLPANCTRREVSHIFRPFVGFREVR-LVNKESRHPGGDPHVLCFVDFDSPAQ 577 + LYI GLP + T +++ + +P+ + +++K + G FVDFDSPA Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKG----YGFVDFDSPAA 115 Query: 578 ATIALEALQ 604 A A+ AL+ Sbjct: 116 AQKAVSALK 124
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 33.5 bits (75), Expect = 0.54 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Frame = +2 Query: 392 PPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNK-ESRHPGGDPHV-LCFVDFD 565 P AS +++++ L T R ++ F+ GF ++ K +S++ G + FV+F Sbjct: 600 PATASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFS 659 Query: 566 SPAQATIALEALQGYKFDEH 625 S A IA +A+ G+ D H Sbjct: 660 SKEAAEIAQKAMDGHVLDGH 679
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 33.1 bits (74), Expect = 0.70 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = +2 Query: 404 SNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQAT 583 S+ LY++ L + + ++ IF PF +K R P G FV F +P +AT Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTS----SKVMRDPNGTSKGSGFVAFATPEEAT 372 Query: 584 IALEALQG 607 A+ L G Sbjct: 373 EAMSQLSG 380
>NRD1_YEAST (P53617) Protein NRD1| Length = 575 Score = 32.7 bits (73), Expect = 0.92 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 9/59 (15%) Frame = +2 Query: 374 RPEP-----PLPPDA----SNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRH 523 RP+P LPPD S TL+I G+P N +++++ +PF + V ++N +H Sbjct: 319 RPKPVSYDSTLPPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEVQSV-ILNNSRKH 376
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/81 (28%), Positives = 38/81 (46%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP DA+ LY+ GLP T++E+ +F + R++ + G + Sbjct: 122 ARPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GVSRGVG 176 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD +A A++ L G K Sbjct: 177 FIRFDKRIEAEEAIKGLNGQK 197
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/81 (28%), Positives = 38/81 (46%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP DA+ LY+ GLP T++E+ +F + R++ + G + Sbjct: 115 ARPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GISRGVG 169 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD +A A++ L G K Sbjct: 170 FIRFDKRIEAEEAIKGLNGQK 190
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/81 (28%), Positives = 38/81 (46%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP DA+ LY+ GLP T++E+ +F + R++ + G + Sbjct: 115 ARPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GISRGVG 169 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD +A A++ L G K Sbjct: 170 FIRFDKRIEAEEAIKGLNGQK 190
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/81 (28%), Positives = 38/81 (46%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP DA+ LY+ GLP T++E+ +F + R++ + G + Sbjct: 115 ARPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GISRGVG 169 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD +A A++ L G K Sbjct: 170 FIRFDKRIEAEEAIKGLNGQK 190
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/81 (28%), Positives = 38/81 (46%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP DA+ LY+ GLP T++E+ +F + R++ + G + Sbjct: 127 ARPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GVSRGVG 181 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD +A A++ L G K Sbjct: 182 FIRFDKRIEAEEAIKGLNGQK 202
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/81 (28%), Positives = 38/81 (46%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP DA+ LY+ GLP T++E+ +F + R++ + G + Sbjct: 115 ARPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GVSRGVG 169 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD +A A++ L G K Sbjct: 170 FIRFDKRIEAEEAIKGLNGQK 190
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/81 (28%), Positives = 38/81 (46%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP DA+ LY+ GLP T++E+ +F + R++ + G + Sbjct: 115 ARPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GISRGVG 169 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD +A A++ L G K Sbjct: 170 FIRFDKRIEAEEAIKGLNGQK 190
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = +2 Query: 413 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCF--VDFDSPAQATI 586 ++++ L T + +S +F+P GF + K G + F V+F + QA + Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678 Query: 587 ALEALQGYKFDEH 625 A+ L G+ D H Sbjct: 679 AISTLDGHVLDGH 691
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 31.6 bits (70), Expect = 2.0 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIA 589 TL+I+ L + T + +F + + K+++ FV++ P QA A Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782 Query: 590 LEALQGYKFDEHDRE 634 L+ LQG+ D H E Sbjct: 783 LKQLQGHTVDGHKLE 797
>SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1250 Score = 31.6 bits (70), Expect = 2.0 Identities = 23/84 (27%), Positives = 34/84 (40%) Frame = -2 Query: 600 RASSAIVAWAGLSKSTKHRT*GSPPGCLDSLLTSLTSRKPTKGRNICETSLRVQFAGRPS 421 R SS LS ++ + PPG L + L S P++ R +AG P Sbjct: 354 RESSPTRRLNNLSPASHLASSSPPPGLPSGLPSGLPSGSPSRSRLSYAGGRPPSYAGSPV 413 Query: 420 IYKVLDASGGRGGSGLAPYPMALL 349 + G G G++P P A+L Sbjct: 414 HHAAERLGGAPTGQGVSPSPSAIL 437
>AN3_XENLA (P24346) Putative ATP-dependent RNA helicase an3 (EC 3.6.1.-)| Length = 697 Score = 31.6 bits (70), Expect = 2.0 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 86 RPDYGDGPGGQEMAGYYPRENAGYHSLRDNEA 181 R YG G+ G+Y REN+G++S RD +A Sbjct: 80 RGGYGSRGTGRSDRGFYDRENSGWNSGRDKDA 111
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 31.6 bits (70), Expect = 2.0 Identities = 22/81 (27%), Positives = 39/81 (48%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP DA+ LY+ GLP +++E+ +F + R++ ++ G + Sbjct: 115 ARPSSASIRDAN--LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQAT---GVSRGVG 169 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD +A A++ L G K Sbjct: 170 FIRFDKRIEAEEAIKGLNGQK 190
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 31.2 bits (69), Expect = 2.7 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIA 589 TL+I+ L + T ++ +F + + K+++ FV++ P QA A Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790 Query: 590 LEALQGYKFDEHDRE 634 L+ LQG+ D H E Sbjct: 791 LKQLQGHVVDGHKLE 805
>MDE7_SCHPO (O59784) RNA-binding protein mde7 (Mei4-dependent protein 7)| Length = 761 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/72 (27%), Positives = 33/72 (45%) Frame = +2 Query: 407 NTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATI 586 NT+Y+ L +++ F G+R + K G P +CFV+F+ A Sbjct: 602 NTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIK-----GNSP--MCFVEFEEVCHAAK 654 Query: 587 ALEALQGYKFDE 622 A+E +QG D+ Sbjct: 655 AMEKMQGAALDD 666
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +2 Query: 380 EPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLV-NKESRHPGG 532 EP SN +++ G+P NC E+ F F EV ++ + E + P G Sbjct: 105 EPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRG 156
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIA 589 TLY+ L + T + +F + +++ + H DP+ CFV+F A A Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE---HTSNDPY--CFVEFYEHRDAAAA 64 Query: 590 LEALQGYK 613 L A+ G K Sbjct: 65 LAAMNGRK 72
>RNP1_YEAST (P32385) Ribonucleoprotein 1| Length = 249 Score = 30.4 bits (67), Expect = 4.6 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKE 514 TLY+ LP NC ++++ +F P G + ++ K+ Sbjct: 36 TLYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKK 70 Score = 29.6 bits (65), Expect = 7.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 383 PPLPPDASNTLYIEGLPANCTRREVSHIF 469 P L P ++NTLY++ +P T +++ IF Sbjct: 132 PDLKPLSTNTLYVKNIPMKSTNEDLAKIF 160
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIA 589 TLY+ L + T + +F + +++ + G DP+ CFV+F A A Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTA---GNDPY--CFVEFHEHRHAAAA 62 Query: 590 LEALQGYK 613 L A+ G K Sbjct: 63 LAAMNGRK 70
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQATIA 589 TLY+ L + T + +F + +++ + G DP+ CFV+F A A Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTA---GNDPY--CFVEFHEHRHAAAA 62 Query: 590 LEALQGYK 613 L A+ G K Sbjct: 63 LAAMNGRK 70
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 30.4 bits (67), Expect = 4.6 Identities = 22/81 (27%), Positives = 38/81 (46%) Frame = +2 Query: 371 ARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLC 550 ARP DA+ LY+ GLP +++E+ +F + R++ + G + Sbjct: 115 ARPSSASIRDAN--LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVT---GVSRGVG 169 Query: 551 FVDFDSPAQATIALEALQGYK 613 F+ FD +A A++ L G K Sbjct: 170 FIRFDKRIEAEEAIKGLNGQK 190
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +2 Query: 368 GARPEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLV-NKESRHPGG 532 G + P SN +++ G+P NC E+ F+ F EV ++ + E + P G Sbjct: 100 GWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRG 155
>Y2392_ARCFU (O30279) Hypothetical protein AF2392| Length = 86 Score = 30.0 bits (66), Expect = 6.0 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%) Frame = +1 Query: 259 WCHGWSCNGW-WWNEWISC**SSYDGCRWYGQQSH 360 W GW GW WW + CRW+G + H Sbjct: 4 WMPGWGGRGWRWWYRATGL--PGWMRCRWWGYRDH 36
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = +2 Query: 410 TLYIEGLPANCTRREVSHIFRPFVGFREVRLVNK-ESRHPGGDPHV-LCFVDFDSPAQAT 583 +++I+ L + T + ++ F+ F GF ++ K + +H G + FV+F + QA Sbjct: 664 SIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQAN 723 Query: 584 IALEALQGYKFDEH 625 + A+ G D H Sbjct: 724 AVIAAMDGTVIDGH 737
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/68 (25%), Positives = 30/68 (44%) Frame = +2 Query: 377 PEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFV 556 P PP N +++ G P + T E+ F F ++V++V + G F+ Sbjct: 57 PAPPTYELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMV----KSLDGQSKGYGFI 112 Query: 557 DFDSPAQA 580 F++ QA Sbjct: 113 TFETEDQA 120
>IF39_ARATH (Q9C5Z1) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p110) (eIF3b) (p82) Length = 712 Score = 29.6 bits (65), Expect = 7.8 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 548 CFVDFDSPAQATIALEALQGYKFDE 622 CF++F++P +A A E GYK D+ Sbjct: 108 CFIEFNTPQEAQNAKEKSHGYKLDK 132
>IF39_TOBAC (P56821) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p110) (eIF3b) Length = 719 Score = 29.6 bits (65), Expect = 7.8 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%) Frame = +2 Query: 380 EPPLPPDAS--NTLYIEGLPANCTRR--EVSHIFRPFVGFREVRLVNKESRHPGGDPHV- 544 E PL DA N L ++ LP + ++ + R + ++ ++ ++ DP Sbjct: 49 EDPLEFDAGFGNILVVDNLPVVPKEKFEKLEGVVRKI--YSQLGVIKEDGLWMPVDPETH 106 Query: 545 ----LCFVDFDSPAQATIALEALQGYKFD 619 CF+++++P +A ++ E GYK D Sbjct: 107 KTLGYCFIEYNTPQEAELSKEKTHGYKLD 135
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 29.6 bits (65), Expect = 7.8 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +2 Query: 404 SNTLYIEGLPANCTRREVSHIFRPFVGFREVRLV-NKESRHPGG 532 SN +++ G+P NC E+ F+ F EV ++ + E + P G Sbjct: 112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRG 155
>SNIP_HUMAN (Q9C0H9) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1055 Score = 29.6 bits (65), Expect = 7.8 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = -2 Query: 549 HRT*GSPPGCLDSLLTS-LTSRKPTKGRNICETSLRVQFAGRPSIYKVLDASGGRGGSGL 373 H GSPP L S L S L S P++ R +AG P + G G+ Sbjct: 174 HLASGSPPPGLPSGLPSGLQSGSPSRSRLSYAGGRPPSYAGSPVHHAAERLGGAPAAQGV 233 Query: 372 APYPMALL 349 +P P A+L Sbjct: 234 SPSPSAIL 241
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 29.6 bits (65), Expect = 7.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 377 PEPPLPPDASNTLYIEGLPANCTRREVSH 463 P PP+PP +++ ++ LP +RE+SH Sbjct: 1288 PAPPVPPRQNSSPHLPKLPPKTYKRELSH 1316
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 29.6 bits (65), Expect = 7.8 Identities = 19/67 (28%), Positives = 32/67 (47%) Frame = +2 Query: 404 SNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQAT 583 S + I+ LP T+R++ +F + VRL K G FV++ + +A Sbjct: 718 STKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRG----FGFVEYSTVREAQ 773 Query: 584 IALEALQ 604 A+EAL+ Sbjct: 774 SAMEALK 780 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,478,504 Number of Sequences: 219361 Number of extensions: 1760326 Number of successful extensions: 5416 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 5136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5389 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
