Clone Information

BLAST Search Result

Clone Name	basd16a12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483639.1\| Oryza sativa (japonica cultivar-group), mRNA	293	4e-76
2	dbj\|AK120698.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	293	4e-76
3	gb\|AY105876.1\| Zea mays PCO109868 mRNA sequence	293	4e-76
4	gb\|AY536125.1\| Zea mays MEG5 (meg5) mRNA, complete cds	246	7e-62
5	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
6	dbj\|AP004704.3\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
7	dbj\|AP004163.3\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
8	ref\|XM_550578.1\| Oryza sativa (japonica cultivar-group), mRNA	72	2e-09
9	gb\|AY105296.1\| Zea mays PCO103628 mRNA sequence	72	2e-09
10	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
11	dbj\|AP002838.2\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
12	dbj\|AP001168.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
13	ref\|NM_202146.1\| Arabidopsis thaliana nucleic acid binding AT1G2...	42	2.2
14	ref\|NM_106345.2\| Arabidopsis thaliana nucleic acid binding AT1G7...	42	2.2
15	gb\|AE014291.4\| Brucella suis 1330 chromosome I, complete sequence	42	2.2
16	gb\|AC002291.1\| Arabidopsis thaliana chromosome I BAC F22K20 geno...	42	2.2
17	gb\|AC156451.2\| Volvox carteri clone JGIAOBO-45F10, complete sequ...	42	2.2
18	gb\|AE009632.1\| Brucella melitensis 16M chromosome I, section 189...	42	2.2
19	gb\|AC084208.5\| Homo sapiens BAC clone RP11-228P15 from 2, comple...	42	2.2
20	gb\|AC036104.3\|F16F4 Sequence of BAC F16F4 from Arabidopsis thali...	42	2.2
21	gb\|AE017223.1\| Brucella abortus biovar 1 str. 9-941 chromosome I...	42	2.2
22	dbj\|AK117533.1\| Arabidopsis thaliana At1g76940 mRNA for unknown ...	42	2.2
23	dbj\|AK073499.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.2
24	dbj\|AK064353.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.2
25	emb\|AM040264.1\| Brucella melitensis biovar Abortus chromosome I,...	42	2.2
26	gb\|AC139638.14\| Mus musculus chromosome 10, clone RP24-208F10, c...	40	8.6
27	gb\|AC159413.1\| Trypanosoma brucei chromosome 7 clone RPCI93-22O1...	40	8.6
28	gb\|AC162883.4\| Mus musculus chromosome 1, clone RP24-148E21, com...	40	8.6
29	gb\|CP000070.1\| Trypanosoma brucei chromosome 7, complete sequence	40	8.6
30	gb\|AC159433.1\| Trypanosoma brucei chromosome 7 clone RPCI93-28I8...	40	8.6
31	gb\|AC123694.11\| Mus musculus chromosome 10, clone RP23-326O5, co...	40	8.6
32	gb\|AC131672.3\| Mus musculus chromosome UNK clone RP23-314O21, co...	40	8.6
33	ref\|XM_818755.1\| Trypanosoma brucei TREU927 clone RPCI93-22O10 h...	40	8.6
34	gb\|AC126121.2\| Homo sapiens chromosome 3 clone RP11-719N22, comp...	40	8.6
35	gb\|AC073927.9\| Homo sapiens BAC clone RP11-604B16 from 7, comple...	40	8.6
36	emb\|BX640444.1\| Bordetella bronchiseptica strain RB50, complete ...	40	8.6
37	emb\|BX640426.1\| Bordetella parapertussis strain 12822, complete ...	40	8.6
38	gb\|AC109440.2\| Homo sapiens chromosome 5 clone CTB-26A17, comple...	40	8.6
39	gb\|AC010453.5\| Homo sapiens chromosome 5 clone CTD-2248K2, compl...	40	8.6
40	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
41	ref\|XM_394553.2\| PREDICTED: Apis mellifera similar to GA18626-PA...	40	8.6
42	dbj\|AP005167.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
43	dbj\|AP004654.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
44	dbj\|AP005406.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
45	dbj\|AK110546.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.6
46	emb\|AJ310795.1\|SCO310795 Sisyranthus compactus 18S rRNA gene (pa...	40	8.6
47	emb\|AJ310791.1\|NKA310791 Neoschumannia kamerunensis 18S rRNA gen...	40	8.6
48	emb\|AJ310790.1\|NCA310790 Neoschumannia cardinea Moore) Meve 18S ...	40	8.6
49	emb\|AJ310780.1\|ACO310780 Anisotoma cordifolia 18S rRNA gene (par...	40	8.6

>ref|XM_483639.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1825

 Score =  293 bits (148), Expect = 4e-76
 Identities = 276/318 (86%), Gaps = 3/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 290 ggtggaatgagtggatatcctgttgatgatcgtcgtatgatgggtgtcgttggtatggac 349
           ||||||||| | || |||||||||||||||||||| ||||| |||||   ||| ||||||
Sbjct: 537 ggtggaatgggaggctatcctgttgatgatcgtcggatgattggtgt---tggcatggac 593

                                                                       
Query: 350 agcagagccatggggtatggtgcaagacccgagccccctcttcccccggatgcatccaac 409
           |||||||  ||||| ||||||||||| |||||||| ||||| ||  | |||||||| | |
Sbjct: 594 agcagaggtatgggctatggtgcaaggcccgagcctcctctcccagcagatgcatcaagc 653

                                                                       
Query: 410 actttgtatattgaaggtctgcctgcaaactgcacacgcagggaggtttcacatatattc 469
           ||| ||||  ||||||| |||||||||||||||||||| |||||||| ||||||||||| 
Sbjct: 654 actctgtacgttgaaggcctgcctgcaaactgcacacgaagggaggtgtcacatatattt 713

                                                                       
Query: 470 cgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagagtcaagacatcctggt 529
           ||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| 
Sbjct: 714 cgcccttttgtaggttttcgtgaagtcagacttgtcaacaaggagtcaagacaccctgga 773

                                                                       
Query: 530 ggagatcctcatgtcctgtgtttcgttgattttgatagccctgcccaagctactattgca 589
           ||||||||||||||| |||| || ||||||||||||| |||||| ||||||||| |||| 
Sbjct: 774 ggagatcctcatgtcttgtgctttgttgattttgataaccctgcgcaagctactcttgct 833

                             
Query: 590 cttgaagctctgcaaggt 607
           ||||||||  ||||||||
Sbjct: 834 cttgaagcattgcaaggt 851



 Score =  111 bits (56), Expect = 3e-21
 Identities = 178/219 (81%), Gaps = 6/219 (2%)
 Strand = Plus / Plus

                                                                       
Query: 62  gccgcgccgtcgcttaagcgcgcgcgcccagactacggtgatggtcctggaggacaagag 121
           ||||||||| |||| |||||||||||||| |||||||| ||||  |||| ||||||||| 
Sbjct: 315 gccgcgccgccgctcaagcgcgcgcgccccgactacggagatgtgcctgcaggacaagac 374

                                                                       
Query: 122 atggctggatattatccgcgtgaaaatg------caggttatcactcacttagagacaat 175
           ||| |||| |||||||| ||||| | ||      ||||||| ||  |||| ||||| |||
Sbjct: 375 atgactggttattatccacgtgagactgacaggacaggttaccatgcactgagagagaat 434

                                                                       
Query: 176 gaagcaattggagcgtcttatgaccgctacttacgaaatgggatgccttctgtggcagcc 235
           || || || ||||| || ||||| |||||||| || ||||||||||||||||| || |||
Sbjct: 435 gaggctatcggagcatcctatgatcgctacttgcgtaatgggatgccttctgttgctgcc 494

                                                  
Query: 236 aatgaaccaagtagggcagttgttggtgccatgggtgga 274
           | |||| | | |||| ||||||||||||  |||||||||
Sbjct: 495 actgaaaccaataggccagttgttggtggtatgggtgga 533



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                          
Query: 604  aggttataagtttgacgaacacgatcgtga 633
            ||||||||||||||||||||||||||||||
Sbjct: 1326 aggttataagtttgacgaacacgatcgtga 1355

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>dbj|AK120698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170L18, full
           insert sequence
          Length = 1825

 Score =  293 bits (148), Expect = 4e-76
 Identities = 276/318 (86%), Gaps = 3/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 290 ggtggaatgagtggatatcctgttgatgatcgtcgtatgatgggtgtcgttggtatggac 349
           ||||||||| | || |||||||||||||||||||| ||||| |||||   ||| ||||||
Sbjct: 537 ggtggaatgggaggctatcctgttgatgatcgtcggatgattggtgt---tggcatggac 593

                                                                       
Query: 350 agcagagccatggggtatggtgcaagacccgagccccctcttcccccggatgcatccaac 409
           |||||||  ||||| ||||||||||| |||||||| ||||| ||  | |||||||| | |
Sbjct: 594 agcagaggtatgggctatggtgcaaggcccgagcctcctctcccagcagatgcatcaagc 653

                                                                       
Query: 410 actttgtatattgaaggtctgcctgcaaactgcacacgcagggaggtttcacatatattc 469
           ||| ||||  ||||||| |||||||||||||||||||| |||||||| ||||||||||| 
Sbjct: 654 actctgtacgttgaaggcctgcctgcaaactgcacacgaagggaggtgtcacatatattt 713

                                                                       
Query: 470 cgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagagtcaagacatcctggt 529
           ||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| 
Sbjct: 714 cgcccttttgtaggttttcgtgaagtcagacttgtcaacaaggagtcaagacaccctgga 773

                                                                       
Query: 530 ggagatcctcatgtcctgtgtttcgttgattttgatagccctgcccaagctactattgca 589
           ||||||||||||||| |||| || ||||||||||||| |||||| ||||||||| |||| 
Sbjct: 774 ggagatcctcatgtcttgtgctttgttgattttgataaccctgcgcaagctactcttgct 833

                             
Query: 590 cttgaagctctgcaaggt 607
           ||||||||  ||||||||
Sbjct: 834 cttgaagcattgcaaggt 851



 Score =  111 bits (56), Expect = 3e-21
 Identities = 178/219 (81%), Gaps = 6/219 (2%)
 Strand = Plus / Plus

                                                                       
Query: 62  gccgcgccgtcgcttaagcgcgcgcgcccagactacggtgatggtcctggaggacaagag 121
           ||||||||| |||| |||||||||||||| |||||||| ||||  |||| ||||||||| 
Sbjct: 315 gccgcgccgccgctcaagcgcgcgcgccccgactacggagatgtgcctgcaggacaagac 374

                                                                       
Query: 122 atggctggatattatccgcgtgaaaatg------caggttatcactcacttagagacaat 175
           ||| |||| |||||||| ||||| | ||      ||||||| ||  |||| ||||| |||
Sbjct: 375 atgactggttattatccacgtgagactgacaggacaggttaccatgcactgagagagaat 434

                                                                       
Query: 176 gaagcaattggagcgtcttatgaccgctacttacgaaatgggatgccttctgtggcagcc 235
           || || || ||||| || ||||| |||||||| || ||||||||||||||||| || |||
Sbjct: 435 gaggctatcggagcatcctatgatcgctacttgcgtaatgggatgccttctgttgctgcc 494

                                                  
Query: 236 aatgaaccaagtagggcagttgttggtgccatgggtgga 274
           | |||| | | |||| ||||||||||||  |||||||||
Sbjct: 495 actgaaaccaataggccagttgttggtggtatgggtgga 533



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                          
Query: 604  aggttataagtttgacgaacacgatcgtga 633
            ||||||||||||||||||||||||||||||
Sbjct: 1326 aggttataagtttgacgaacacgatcgtga 1355

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>gb|AY105876.1| Zea mays PCO109868 mRNA sequence
          Length = 789

 Score =  293 bits (148), Expect = 4e-76
 Identities = 280/324 (86%)
 Strand = Plus / Plus

                                                                       
Query: 310 tgttgatgatcgtcgtatgatgggtgtcgttggtatggacagcagagccatggggtatgg 369
           |||||||| ||  |||||||||||||| |||||||||||||||||||  ||||| |||||
Sbjct: 13  tgttgatggtcagcgtatgatgggtgttgttggtatggacagcagagggatgggatatgg 72

                                                                       
Query: 370 tgcaagacccgagccccctcttcccccggatgcatccaacactttgtatattgaaggtct 429
           ||  ||||| ||||| |||||||| || |||||||| | |||| | |||||||| ||  |
Sbjct: 73  tggcagacctgagccacctcttccgcctgatgcatcaagcactctatatattgagggctt 132

                                                                       
Query: 430 gcctgcaaactgcacacgcagggaggtttcacatatattccgcccttttgttggttttcg 489
            |||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 133 acctgcaaactgcacacgacgggaggtttcacatatatttcgcccatttgttggttttcg 192

                                                                       
Query: 490 tgaagtgaggcttgtcaacaaagagtcaagacatcctggtggagatcctcatgtcctgtg 549
           ||||||  | ||||||||||| ||||| |||||||||||||||||||| |||||  ||||
Sbjct: 193 tgaagttcgtcttgtcaacaaggagtccagacatcctggtggagatccacatgtgttgtg 252

                                                                       
Query: 550 tttcgttgattttgatagccctgcccaagctactattgcacttgaagctctgcaaggtta 609
           ||||||||||||||| | |||||| || ||||| ||||| || |||||  | ||||||||
Sbjct: 253 tttcgttgattttgacaaccctgctcaggctacaattgctctggaagcattacaaggtta 312

                                   
Query: 610 taagtttgacgaacacgatcgtga 633
           |||||||||||||||||| |||||
Sbjct: 313 taagtttgacgaacacgagcgtga 336

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>gb|AY536125.1| Zea mays MEG5 (meg5) mRNA, complete cds
          Length = 621

 Score =  246 bits (124), Expect = 7e-62
 Identities = 247/288 (85%)
 Strand = Plus / Plus

                                                                       
Query: 310 tgttgatgatcgtcgtatgatgggtgtcgttggtatggacagcagagccatggggtatgg 369
           |||||||| ||  |||||||||||||| |||||||||||||||||||  ||||| |||||
Sbjct: 22  tgttgatggtcagcgtatgatgggtgttgttggtatggacagcagagggatgggatatgg 81

                                                                       
Query: 370 tgcaagacccgagccccctcttcccccggatgcatccaacactttgtatattgaaggtct 429
           ||  ||||| ||||| |||||||| || |||||||| | |||| | |||||||| ||  |
Sbjct: 82  tggcagacctgagccacctcttccgcctgatgcatcaagcactctatatattgagggctt 141

                                                                       
Query: 430 gcctgcaaactgcacacgcagggaggtttcacatatattccgcccttttgttggttttcg 489
            |||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 142 acctgcaaactgcacacgacgggaggtttcacatatatttcgcccatttgttggttttcg 201

                                                                       
Query: 490 tgaagtgaggcttgtcaacaaagagtcaagacatcctggtggagatcctcatgtcctgtg 549
           ||||||  | ||||||||||| ||||| |||||||||||||||||||| |||||  ||||
Sbjct: 202 tgaagttcgtcttgtcaacaaggagtccagacatcctggtggagatccacatgtgttgtg 261

                                                           
Query: 550 tttcgttgattttgatagccctgcccaagctactattgcacttgaagc 597
           |||||| |||||||| | |||||| || ||||| ||||| || |||||
Sbjct: 262 tttcgtcgattttgacaaccctgctcaggctacaattgctctggaagc 309

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  131 bits (66), Expect = 3e-27
 Identities = 146/172 (84%), Gaps = 3/172 (1%)
 Strand = Plus / Plus

                                                                            
Query: 290      ggtggaatgagtggatatcctgttgatgatcgtcgtatgatgggtgtcgttggtatggac 349
                ||||||||| | || |||||||||||||||||||| ||||| |||||   ||| ||||||
Sbjct: 27392287 ggtggaatgggaggctatcctgttgatgatcgtcggatgattggtgt---tggcatggac 27392343

                                                                            
Query: 350      agcagagccatggggtatggtgcaagacccgagccccctcttcccccggatgcatccaac 409
                |||||||  ||||| ||||||||||| |||||||| ||||| ||  | |||||||| | |
Sbjct: 27392344 agcagaggtatgggctatggtgcaaggcccgagcctcctctcccagcagatgcatcaagc 27392403

                                                                    
Query: 410      actttgtatattgaaggtctgcctgcaaactgcacacgcagggaggtttcac 461
                ||| ||||  ||||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 27392404 actctgtacgttgaaggcctgcctgcaaactgcacacgaagggaggtgtcac 27392455



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                            
Query: 524      cctggtggagatcctcatgtcctgtgtttcgttgattttgatagccctgcccaagctact 583
                ||||| ||||||||||||||| |||| || ||||||||||||| |||||| |||||||||
Sbjct: 27392778 cctggaggagatcctcatgtcttgtgctttgttgattttgataaccctgcgcaagctact 27392837

                                        
Query: 584      attgcacttgaagctctgcaaggt 607
                 |||| ||||||||  ||||||||
Sbjct: 27392838 cttgctcttgaagcattgcaaggt 27392861



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                            
Query: 462      atatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagagtcaagac 521
                ||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 27392641 atatatttcgcccttttgtaggttttcgtgaagtcagacttgtcaacaaggagtcaagac 27392700

                 
Query: 522      a 522
                |
Sbjct: 27392701 a 27392701



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                              
Query: 604      aggttataagtttgacgaacacgatcgtga 633
                ||||||||||||||||||||||||||||||
Sbjct: 27393336 aggttataagtttgacgaacacgatcgtga 27393365



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 62       gccgcgccgtcgcttaagcgcgcgcgcccagactacgg 99
                ||||||||| |||| |||||||||||||| ||||||||
Sbjct: 27391020 gccgcgccgccgctcaagcgcgcgcgccccgactacgg 27391057



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                          
Query: 217      gatgccttctgtggcagccaatgaaccaagtagggcagttgttggtgccatgggtgga 274
                |||||||||||| || |||| |||| | | |||| ||||||||||||  |||||||||
Sbjct: 27392226 gatgccttctgttgctgccactgaaaccaataggccagttgttggtggtatgggtgga 27392283



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 252    cagttgttggtgccatgggtggag 275
              |||||| |||||||||||||||||
Sbjct: 107942 cagttgctggtgccatgggtggag 107965

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>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0544G09
          Length = 137481

 Score =  131 bits (66), Expect = 3e-27
 Identities = 146/172 (84%), Gaps = 3/172 (1%)
 Strand = Plus / Plus

                                                                         
Query: 290   ggtggaatgagtggatatcctgttgatgatcgtcgtatgatgggtgtcgttggtatggac 349
             ||||||||| | || |||||||||||||||||||| ||||| |||||   ||| ||||||
Sbjct: 19082 ggtggaatgggaggctatcctgttgatgatcgtcggatgattggtgt---tggcatggac 19138

                                                                         
Query: 350   agcagagccatggggtatggtgcaagacccgagccccctcttcccccggatgcatccaac 409
             |||||||  ||||| ||||||||||| |||||||| ||||| ||  | |||||||| | |
Sbjct: 19139 agcagaggtatgggctatggtgcaaggcccgagcctcctctcccagcagatgcatcaagc 19198

                                                                 
Query: 410   actttgtatattgaaggtctgcctgcaaactgcacacgcagggaggtttcac 461
             ||| ||||  ||||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 19199 actctgtacgttgaaggcctgcctgcaaactgcacacgaagggaggtgtcac 19250



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                         
Query: 524   cctggtggagatcctcatgtcctgtgtttcgttgattttgatagccctgcccaagctact 583
             ||||| ||||||||||||||| |||| || ||||||||||||| |||||| |||||||||
Sbjct: 19573 cctggaggagatcctcatgtcttgtgctttgttgattttgataaccctgcgcaagctact 19632

                                     
Query: 584   attgcacttgaagctctgcaaggt 607
              |||| ||||||||  ||||||||
Sbjct: 19633 cttgctcttgaagcattgcaaggt 19656



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 462   atatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagagtcaagac 521
             ||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 19436 atatatttcgcccttttgtaggttttcgtgaagtcagacttgtcaacaaggagtcaagac 19495

              
Query: 522   a 522
             |
Sbjct: 19496 a 19496



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                           
Query: 604   aggttataagtttgacgaacacgatcgtga 633
             ||||||||||||||||||||||||||||||
Sbjct: 20131 aggttataagtttgacgaacacgatcgtga 20160



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 62    gccgcgccgtcgcttaagcgcgcgcgcccagactacgg 99
             ||||||||| |||| |||||||||||||| ||||||||
Sbjct: 17815 gccgcgccgccgctcaagcgcgcgcgccccgactacgg 17852



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 217   gatgccttctgtggcagccaatgaaccaagtagggcagttgttggtgccatgggtgga 274
             |||||||||||| || |||| |||| | | |||| ||||||||||||  |||||||||
Sbjct: 19021 gatgccttctgttgctgccactgaaaccaataggccagttgttggtggtatgggtgga 19078

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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score =  131 bits (66), Expect = 3e-27
 Identities = 146/172 (84%), Gaps = 3/172 (1%)
 Strand = Plus / Plus

                                                                         
Query: 290   ggtggaatgagtggatatcctgttgatgatcgtcgtatgatgggtgtcgttggtatggac 349
             ||||||||| | || |||||||||||||||||||| ||||| |||||   ||| ||||||
Sbjct: 93814 ggtggaatgggaggctatcctgttgatgatcgtcggatgattggtgt---tggcatggac 93870

                                                                         
Query: 350   agcagagccatggggtatggtgcaagacccgagccccctcttcccccggatgcatccaac 409
             |||||||  ||||| ||||||||||| |||||||| ||||| ||  | |||||||| | |
Sbjct: 93871 agcagaggtatgggctatggtgcaaggcccgagcctcctctcccagcagatgcatcaagc 93930

                                                                 
Query: 410   actttgtatattgaaggtctgcctgcaaactgcacacgcagggaggtttcac 461
             ||| ||||  ||||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 93931 actctgtacgttgaaggcctgcctgcaaactgcacacgaagggaggtgtcac 93982



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                         
Query: 524   cctggtggagatcctcatgtcctgtgtttcgttgattttgatagccctgcccaagctact 583
             ||||| ||||||||||||||| |||| || ||||||||||||| |||||| |||||||||
Sbjct: 94305 cctggaggagatcctcatgtcttgtgctttgttgattttgataaccctgcgcaagctact 94364

                                     
Query: 584   attgcacttgaagctctgcaaggt 607
              |||| ||||||||  ||||||||
Sbjct: 94365 cttgctcttgaagcattgcaaggt 94388



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 462   atatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagagtcaagac 521
             ||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct: 94168 atatatttcgcccttttgtaggttttcgtgaagtcagacttgtcaacaaggagtcaagac 94227

              
Query: 522   a 522
             |
Sbjct: 94228 a 94228



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                           
Query: 604   aggttataagtttgacgaacacgatcgtga 633
             ||||||||||||||||||||||||||||||
Sbjct: 94863 aggttataagtttgacgaacacgatcgtga 94892



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 62    gccgcgccgtcgcttaagcgcgcgcgcccagactacgg 99
             ||||||||| |||| |||||||||||||| ||||||||
Sbjct: 92547 gccgcgccgccgctcaagcgcgcgcgccccgactacgg 92584



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 217   gatgccttctgtggcagccaatgaaccaagtagggcagttgttggtgccatgggtgga 274
             |||||||||||| || |||| |||| | | |||| ||||||||||||  |||||||||
Sbjct: 93753 gatgccttctgttgctgccactgaaaccaataggccagttgttggtggtatgggtgga 93810

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>ref|XM_550578.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 882

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                       
Query: 462 atatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagagtcaagac 521
           |||| ||||| || ||||||||||||||||| ||||| ||||| | ||||||  ||||||
Sbjct: 626 atatcttccgaccatttgttggttttcgtgaggtgagacttgtaagcaaagaagcaagac 685

                           
Query: 522 atcctggtggagatcc 537
           |||||||||| |||||
Sbjct: 686 atcctggtggggatcc 701

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>gb|AY105296.1| Zea mays PCO103628 mRNA sequence
          Length = 945

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 141/176 (80%)
 Strand = Plus / Plus

                                                                       
Query: 455 gtttcacatatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagag 514
           |||||||| || ||||| || |||||||| |||||||| || || ||||| |||||||| 
Sbjct: 709 gtttcacacatcttccgaccatttgttggctttcgtgaggttagacttgtaaacaaagaa 768

                                                                       
Query: 515 tcaagacatcctggtggagatcctcatgtcctgtgtttcgttgattttgatagccctgcc 574
            | | |||||||||||| || |||  |||||| ||||| ||||||||||     ||| | 
Sbjct: 769 ccgaaacatcctggtggtgaccctattgtcctttgttttgttgattttgcggaacctaca 828

                                                                   
Query: 575 caagctactattgcacttgaagctctgcaaggttataagtttgacgaacacgatcg 630
           ||| || |||||||| | || ||| ||||||| |||||||||||||| || |||||
Sbjct: 829 caatctgctattgcattggatgctttgcaaggctataagtttgacgagcatgatcg 884

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                           
Query: 462     atatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagagtcaagac 521
               |||| ||||| || ||||||||||||||||| ||||| ||||| | ||||||  ||||||
Sbjct: 1455872 atatcttccgaccatttgttggttttcgtgaggtgagacttgtaagcaaagaagcaagac 1455931

                 
Query: 522     at 523
               ||
Sbjct: 1455932 at 1455933

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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 462   atatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagagtcaagac 521
             |||| ||||| || ||||||||||||||||| ||||| ||||| | ||||||  ||||||
Sbjct: 63158 atatcttccgaccatttgttggttttcgtgaggtgagacttgtaagcaaagaagcaagac 63217

               
Query: 522   at 523
             ||
Sbjct: 63218 at 63219

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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                          
Query: 462    atatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaagagtcaagac 521
              |||| ||||| || ||||||||||||||||| ||||| ||||| | ||||||  ||||||
Sbjct: 164411 atatcttccgaccatttgttggttttcgtgaggtgagacttgtaagcaaagaagcaagac 164470

                
Query: 522    at 523
              ||
Sbjct: 164471 at 164472

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>ref|NM_202146.1| Arabidopsis thaliana nucleic acid binding AT1G21312 mRNA, complete
           cds
          Length = 633

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 528 gtggagatcctcatgtcctgtgtttcgttgattttga 564
           |||||||||||  ||| |||||||| |||||||||||
Sbjct: 455 gtggagatcctactgttctgtgttttgttgattttga 491

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>ref|NM_106345.2| Arabidopsis thaliana nucleic acid binding AT1G76940 mRNA, complete
           cds
          Length = 1151

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 398 gatgcatccaacactttgtatattgaagg 426
           ||||||||||||||||| ||| |||||||
Sbjct: 567 gatgcatccaacactttatatgttgaagg 595

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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 275     gctgcaatggttggtggtgga 295
               |||||||||||||||||||||
Sbjct: 2057874 gctgcaatggttggtggtgga 2057894

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>gb|AC002291.1| Arabidopsis thaliana chromosome I BAC F22K20 genomic sequence, complete
             sequence
          Length = 96642

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 398   gatgcatccaacactttgtatattgaagg 426
             ||||||||||||||||| ||| |||||||
Sbjct: 22471 gatgcatccaacactttatatgttgaagg 22443

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>gb|AC156451.2| Volvox carteri clone JGIAOBO-45F10, complete sequence
          Length = 35415

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    gcaccagcaccagcaggcggc 21
            |||||||||||||||||||||
Sbjct: 9809 gcaccagcaccagcaggcggc 9789

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>gb|AE009632.1| Brucella melitensis 16M chromosome I, section 189 of 195 of the
            complete sequence
          Length = 10744

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 275  gctgcaatggttggtggtgga 295
            |||||||||||||||||||||
Sbjct: 4443 gctgcaatggttggtggtgga 4423

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>gb|AC084208.5| Homo sapiens BAC clone RP11-228P15 from 2, complete sequence
          Length = 141130

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 431    cctgcaaactgcacacgcagggagg 455
              |||||||||||||||| ||||||||
Sbjct: 111213 cctgcaaactgcacacccagggagg 111189

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>gb|AC036104.3|F16F4 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 55707

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 528  gtggagatcctcatgtcctgtgtttcgttgattttga 564
            |||||||||||  ||| |||||||| |||||||||||
Sbjct: 8948 gtggagatcctactgttctgtgttttgttgattttga 8984

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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 275     gctgcaatggttggtggtgga 295
               |||||||||||||||||||||
Sbjct: 2074342 gctgcaatggttggtggtgga 2074362

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>dbj|AK117533.1| Arabidopsis thaliana At1g76940 mRNA for unknown protein, complete
           cds, clone: RAFL17-19-B16
          Length = 803

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 398 gatgcatccaacactttgtatattgaagg 426
           ||||||||||||||||| ||| |||||||
Sbjct: 219 gatgcatccaacactttatatgttgaagg 247

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>dbj|AK073499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E14, full
            insert sequence
          Length = 2450

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                        
Query: 452  gaggtttcacatatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaa 511
            |||||| ||||||| || ||||| |||  |||||||||||| |||||  | |||||||| 
Sbjct: 1147 gaggttgcacatatttttcgccccttttctggttttcgtgaggtgagattggtcaacaag 1206

                 
Query: 512  gagtc 516
            |||||
Sbjct: 1207 gagtc 1211



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 597  ctctgcaaggttataagtttgacgaaca 624
            |||||||||| ||||||||||| |||||
Sbjct: 1289 ctctgcaaggctataagtttgatgaaca 1316

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>dbj|AK064353.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A10, full
            insert sequence
          Length = 2379

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                        
Query: 452  gaggtttcacatatattccgcccttttgttggttttcgtgaagtgaggcttgtcaacaaa 511
            |||||| ||||||| || ||||| |||  |||||||||||| |||||  | |||||||| 
Sbjct: 1072 gaggttgcacatatttttcgccccttttctggttttcgtgaggtgagattggtcaacaag 1131

                 
Query: 512  gagtc 516
            |||||
Sbjct: 1132 gagtc 1136



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 597  ctctgcaaggttataagtttgacgaaca 624
            |||||||||| ||||||||||| |||||
Sbjct: 1214 ctctgcaaggctataagtttgatgaaca 1241

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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 275     gctgcaatggttggtggtgga 295
               |||||||||||||||||||||
Sbjct: 2071461 gctgcaatggttggtggtgga 2071481

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>gb|AC139638.14| Mus musculus chromosome 10, clone RP24-208F10, complete sequence
          Length = 154570

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  aatgaaccaagtagggcagt 255
            ||||||||||||||||||||
Sbjct: 9376 aatgaaccaagtagggcagt 9395

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>gb|AC159413.1| Trypanosoma brucei chromosome 7 clone RPCI93-22O10, complete sequence
          Length = 156548

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   catgtcctgtgtttcgttga 558
             ||||||||||||||||||||
Sbjct: 56004 catgtcctgtgtttcgttga 56023

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>gb|AC162883.4| Mus musculus chromosome 1, clone RP24-148E21, complete sequence
          Length = 154199

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 340    tggtatggacagcagagccatggg 363
              ||||||||| ||||||||||||||
Sbjct: 108921 tggtatggaaagcagagccatggg 108944

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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 539    catgtcctgtgtttcgttga 558
              ||||||||||||||||||||
Sbjct: 601545 catgtcctgtgtttcgttga 601564

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>gb|AC159433.1| Trypanosoma brucei chromosome 7 clone RPCI93-28I8, complete sequence
          Length = 153310

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   catgtcctgtgtttcgttga 558
             ||||||||||||||||||||
Sbjct: 88345 catgtcctgtgtttcgttga 88364

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>gb|AC123694.11| Mus musculus chromosome 10, clone RP23-326O5, complete sequence
          Length = 214111

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    aatgaaccaagtagggcagt 255
              ||||||||||||||||||||
Sbjct: 170670 aatgaaccaagtagggcagt 170689

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>gb|AC131672.3| Mus musculus chromosome UNK clone RP23-314O21, complete sequence
          Length = 199837

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    tgggtggagctgcaatggtt 286
              ||||||||||||||||||||
Sbjct: 186395 tgggtggagctgcaatggtt 186414

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>ref|XM_818755.1| Trypanosoma brucei TREU927 clone RPCI93-22O10 hypothetical protein
            (Tb927.7.2330) partial mRNA
          Length = 3300

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 539  catgtcctgtgtttcgttga 558
            ||||||||||||||||||||
Sbjct: 1203 catgtcctgtgtttcgttga 1184

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>gb|AC126121.2| Homo sapiens chromosome 3 clone RP11-719N22, complete sequence
          Length = 215273

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   aagtgaggcttgtcaacaaa 511
             ||||||||||||||||||||
Sbjct: 86507 aagtgaggcttgtcaacaaa 86488

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>gb|AC073927.9| Homo sapiens BAC clone RP11-604B16 from 7, complete sequence
          Length = 185676

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   cactcacttagagacaatga 177
             ||||||||||||||||||||
Sbjct: 42396 cactcacttagagacaatga 42377

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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     cagcaccagcaggcggcgat 24
             ||||||||||||||||||||
Sbjct: 69971 cagcaccagcaggcggcgat 69952

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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      cagcaccagcaggcggcgat 24
              ||||||||||||||||||||
Sbjct: 341798 cagcaccagcaggcggcgat 341779

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>gb|AC109440.2| Homo sapiens chromosome 5 clone CTB-26A17, complete sequence
          Length = 79884

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ccttctgtggcagccaatga 240
             ||||||||||||||||||||
Sbjct: 39366 ccttctgtggcagccaatga 39385

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>gb|AC010453.5| Homo sapiens chromosome 5 clone CTD-2248K2, complete sequence
          Length = 88588

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ccttctgtggcagccaatga 240
             ||||||||||||||||||||
Sbjct: 48101 ccttctgtggcagccaatga 48120

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 252      cagttgttggtgccatgggtggag 275
                |||||| |||||||||||||||||
Sbjct: 28914871 cagttgctggtgccatgggtggag 28914894

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>ref|XM_394553.2| PREDICTED: Apis mellifera similar to GA18626-PA (LOC411079), mRNA
          Length = 4422

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 274  agctgcaatggttggtggtg 293
            ||||||||||||||||||||
Sbjct: 2729 agctgcaatggttggtggtg 2710

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>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17
          Length = 180015

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 252   cagttgttggtgccatgggtggag 275
             |||||| |||||||||||||||||
Sbjct: 32408 cagttgctggtgccatgggtggag 32431

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>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0015C07
          Length = 149079

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 252   cagttgttggtgccatgggtggag 275
             |||||| |||||||||||||||||
Sbjct: 23277 cagttgctggtgccatgggtggag 23300

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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1147B12
          Length = 127902

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 252    cagttgttggtgccatgggtggag 275
              |||||| |||||||||||||||||
Sbjct: 107942 cagttgctggtgccatgggtggag 107965

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>dbj|AK110546.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B09, full
           insert sequence
          Length = 1197

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 597 ctctgcaaggttataagtttgacgaaca 624
           |||||||||| ||||||||||| |||||
Sbjct: 871 ctctgcaaggctataagtttgatgaaca 898

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>emb|AJ310795.1|SCO310795 Sisyranthus compactus 18S rRNA gene (partial), 5.8S rRNA gene, 26S
           rRNA gene (partial), internal transcribed spacer 1
           (ITS1) and internal transcribed spacer 2 (ITS2)
          Length = 670

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 cttacgaaatgggatgcctt 224
           ||||||||||||||||||||
Sbjct: 167 cttacgaaatgggatgcctt 186

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>emb|AJ310791.1|NKA310791 Neoschumannia kamerunensis 18S rRNA gene (partial), 5.8S rRNA gene,
           26S rRNA gene (partial), internal transcribed spacer 1
           (ITS1) and internal transcribed spacer 2 (ITS2)
          Length = 671

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 cttacgaaatgggatgcctt 224
           ||||||||||||||||||||
Sbjct: 166 cttacgaaatgggatgcctt 185

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>emb|AJ310790.1|NCA310790 Neoschumannia cardinea Moore) Meve 18S rRNA gene (partial), 5.8S
           rRNA gene, 26S rRNA gene (partial), internal transcribed
           spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2)
          Length = 671

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 cttacgaaatgggatgcctt 224
           ||||||||||||||||||||
Sbjct: 166 cttacgaaatgggatgcctt 185

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>emb|AJ310780.1|ACO310780 Anisotoma cordifolia 18S rRNA gene (partial), 5.8S rRNA gene, 26S
           rRNA gene (partial), internal transcribed spacer 1
           (ITS1) and internal transcribed spacer 2 (ITS2)
          Length = 669

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 cttacgaaatgggatgcctt 224
           ||||||||||||||||||||
Sbjct: 166 cttacgaaatgggatgcctt 185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,849,467
Number of Sequences: 3902068
Number of extensions: 4849467
Number of successful extensions: 100957
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100666
Number of HSP's gapped (non-prelim): 286
length of query: 634
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 611
effective length of database: 17,143,297,704
effective search space: 10474554897144
effective search space used: 10474554897144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result