ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd14p06 |
|---|---|
| Clone Library Name | barley_pub |
>YGFA_ECOLI (P0AC28) Hypothetical protein ygfA| Length = 182 Score = 37.7 bits (86), Expect = 0.028 Identities = 26/80 (32%), Positives = 42/80 (52%) Frame = +2 Query: 113 KVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGAIDDSTMVVTTVHDKQLVDDIP 292 ++D+++ VA D G RLG G GF + ++ T V HD QLV+ +P Sbjct: 109 RLDVLITPLVAFD-EYGQRLGMGGGFYDRTLQNWQHY-----KTQPVGYAHDCQLVEKLP 162 Query: 293 VEKLLIHDVPVDIICTPTQV 352 VE+ D+P+ + TP++V Sbjct: 163 VEE---WDIPLPAVVTPSKV 179
>YGFA_ECO57 (P0AC29) Hypothetical protein ygfA| Length = 182 Score = 37.7 bits (86), Expect = 0.028 Identities = 26/80 (32%), Positives = 42/80 (52%) Frame = +2 Query: 113 KVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGAIDDSTMVVTTVHDKQLVDDIP 292 ++D+++ VA D G RLG G GF + ++ T V HD QLV+ +P Sbjct: 109 RLDVLITPLVAFD-EYGQRLGMGGGFYDRTLQNWQHY-----KTQPVGYAHDCQLVEKLP 162 Query: 293 VEKLLIHDVPVDIICTPTQV 352 VE+ D+P+ + TP++V Sbjct: 163 VEE---WDIPLPAVVTPSKV 179
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 35.4 bits (80), Expect = 0.14 Identities = 25/62 (40%), Positives = 31/62 (50%) Frame = -1 Query: 267 SCTVVTTMVESSIAPI*RSIPYSSSANPSPFPSRAPVLGSTATDPMTIRSTLIISSRPIG 88 S V ++ ESS AP+ S SSSA P P PS + S+A P ST SS P+ Sbjct: 680 SAPVTSSTTESSSAPVTSSTTESSSA-PVPTPSSSTTESSSAPVPTPSSSTTESSSAPVP 738 Query: 87 LP 82 P Sbjct: 739 TP 740 Score = 31.2 bits (69), Expect = 2.6 Identities = 26/62 (41%), Positives = 33/62 (53%) Frame = -1 Query: 267 SCTVVTTMVESSIAPI*RSIPYSSSANPSPFPSRAPVLGSTATDPMTIRSTLIISSRPIG 88 S V ++ ESS AP+ S SSSA P P PS + S+A P+T ST SS P+ Sbjct: 431 SAPVTSSTTESSSAPVTSSTTESSSA-PVPTPSSSTTESSSA--PVT-SSTTESSSAPVP 486 Query: 87 LP 82 P Sbjct: 487 TP 488 Score = 29.6 bits (65), Expect = 7.6 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = -1 Query: 267 SCTVVTTMVESSIAPI--*RSIPYSSSANPSPFPSRAPVLGSTATDPMTIRSTLIISSRP 94 S V ++ ESS AP+ S SS+ P P PS + S+A P ST SS P Sbjct: 692 SAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAP 751 Query: 93 I 91 + Sbjct: 752 V 752 Score = 29.6 bits (65), Expect = 7.6 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = -1 Query: 267 SCTVVTTMVESSIAPI--*RSIPYSSSANPSPFPSRAPVLGSTATDPMTIRSTLIISSRP 94 S V ++ ESS AP+ S SS+ P P PS + S+A P ST SS P Sbjct: 623 SAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAP 682 Query: 93 I 91 + Sbjct: 683 V 683 Score = 29.6 bits (65), Expect = 7.6 Identities = 25/59 (42%), Positives = 32/59 (54%) Frame = -1 Query: 267 SCTVVTTMVESSIAPI*RSIPYSSSANPSPFPSRAPVLGSTATDPMTIRSTLIISSRPI 91 S V ++ ESS AP+ S SSSA P P PS + S+A P+T ST SS P+ Sbjct: 368 SAPVTSSTTESSSAPVTSSTTESSSA-PVPTPSSSTTESSSA--PVT-SSTTESSSAPV 422
>FTHC_YEAST (P40099) 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)| (5,10-methenyl-tetrahydrofolate synthetase) (Methenyl-THF synthetase) (MTHFS) Length = 211 Score = 34.7 bits (78), Expect = 0.24 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Frame = +2 Query: 98 LDEMIKVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGAIDDSTMVVTTVHDKQL 277 ++E +D++++ VA D TGAR+G G G+ + + + + ++V +Q+ Sbjct: 126 IEESDILDVVLVPGVAFDIKTGARMGHGAGYYDDFFQRYKILHE-GQKPLLVGLCLMEQV 184 Query: 278 VDDIPVEKLLIHDVPVD-IIC 337 IP+EK HD +D I+C Sbjct: 185 ASPIPLEK---HDYSMDCIVC 202
>VIV_ORYSA (P37398) Protein viviparous homolog| Length = 728 Score = 31.6 bits (70), Expect = 2.0 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = -1 Query: 210 IPYSSSANPSPFPSRAPVLGSTATDPMT---IRSTLIISSRPIGLPYLAAPTEVHASG 46 +PY + P+ + A G+ P +S++++SS+P P AA ++HASG Sbjct: 292 MPYQAFTPPAAYGGDAMYPGAAGPFPFQQSCSKSSVVVSSQPFSPPTAAAAGDMHASG 349
>ENV_HV1MA (P04583) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 859 Score = 31.2 bits (69), Expect = 2.6 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -3 Query: 217 TKHPIFQLCKSLTLP*SCSRAWINCNRPNDNQ---IHFNHFI*TYRPSIFGCANRSACFR 47 TK+ I QL +++T INC RP +N IHF Y I G R+ C Sbjct: 286 TKNIIVQLNETVT---------INCTRPGNNTRRGIHFGPGQALYTTGIVGDIRRAYCTI 336 Query: 46 NAXQW 32 N +W Sbjct: 337 NETEW 341
>RPIA_STRMU (Q8DTT9) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 225 Score = 30.8 bits (68), Expect = 3.4 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Frame = +2 Query: 59 TSVGAAKYGRPI-GLDEMIKVDLIVIGSVAVDPS-TGARLGKGEGFAELEYGMLR--YMG 226 T+ A G P+ +DE+ VD+ V G+ VDP+ G + G G E G L Y+ Sbjct: 57 TTAQAQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIW 116 Query: 227 AIDDSTMVVT 256 +D+S MV T Sbjct: 117 VVDESKMVDT 126
>RPIA_SYNEL (Q8DJF2) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 236 Score = 30.4 bits (67), Expect = 4.5 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Frame = +2 Query: 62 SVGAAKYGRP-IGLDEMIKVDLIVIGSVAVDPSTGARLGKGEGFAELEYGML-----RYM 223 SV A KYG P + LD++ K+D+ + G+ VDP+ L KG G A ++ +++ Sbjct: 64 SVLAKKYGIPLVTLDDVEKLDIAIDGADEVDPA--KNLIKGGGAAHTREKIVDSLAEQFL 121 Query: 224 GAIDDSTMV 250 +D S +V Sbjct: 122 VVVDSSKLV 130
>PO2F1_RAT (P31503) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) (Fragment) Length = 632 Score = 29.6 bits (65), Expect = 7.6 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%) Frame = -1 Query: 270 LSCTVVTTMVESSIAPI*RSIPYSSSA------NPSPFPSRAPVLGSTATDPMTIRSTLI 109 LS T T ++ A + + P +SSA +PSP S + S+A++ T ++T Sbjct: 381 LSLTGTTDSTSNNTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASETSTTQTT-- 438 Query: 108 ISSRPIGLPYLAAPTEVHASGMHXS 34 S P+ P A+ V ASG+ + Sbjct: 439 --STPLPSPLGASQVMVTASGLQTA 461
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4| precursor Length = 605 Score = 29.6 bits (65), Expect = 7.6 Identities = 21/55 (38%), Positives = 27/55 (49%) Frame = -1 Query: 255 VTTMVESSIAPI*RSIPYSSSANPSPFPSRAPVLGSTATDPMTIRSTLIISSRPI 91 V T ESS+ SI SSS + + +P L ST+T P+T ST S I Sbjct: 121 VETSTESSVYVSSSSITSSSSTSIVDTTTISPTLTSTSTTPLTTASTSTTPSTDI 175
>GLNE_CHRVO (Q7NW95) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 894 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/44 (40%), Positives = 21/44 (47%) Frame = +2 Query: 53 ACTSVGAAKYGRPIGLDEMIKVDLIVIGSVAVDPSTGARLGKGE 184 AC + +YGRPIG D LIVIG +LG GE Sbjct: 107 ACAAASLPQYGRPIGEDSGEPQQLIVIGM--------GKLGGGE 142
>DHA_OCEIH (Q8CX61) Alanine dehydrogenase (EC 1.4.1.1)| Length = 376 Score = 29.6 bits (65), Expect = 7.6 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Frame = +2 Query: 89 PIGLDEMIKVDLIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGAIDD----STMVVT 256 P + E +K +VIGSV + +L E ++ G + AID T+ Sbjct: 221 PYNIAEAVKDSDLVIGSVLIPGRKAPKLVTDEMIQSMQPGSVLVDVAIDQGGNFETVDHP 280 Query: 257 TVHDKQLVDDIPVEKLLIHDVPVDIICTPTQVILTNTAIP 376 T HD+ + V + ++P + T T V LTN +P Sbjct: 281 TTHDEPIYVKHDVLHYAVANIPGAVPRTAT-VGLTNVTVP 319
>PURL_HALMA (Q5V2D3) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 720 Score = 29.6 bits (65), Expect = 7.6 Identities = 23/66 (34%), Positives = 32/66 (48%) Frame = +2 Query: 122 LIVIGSVAVDPSTGARLGKGEGFAELEYGMLRYMGAIDDSTMVVTTVHDKQLVDDIPVEK 301 L+V+G A++ T RLG E A+ G R+ DST VV T+ + D + Sbjct: 558 LVVVGDTALEGKTDPRLGGSEYTAQFG-GTDRFPALPVDSTDVVETIAEVADADHV---- 612 Query: 302 LLIHDV 319 L HDV Sbjct: 613 LASHDV 618
>DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like protein)| (Fer-1-like protein 1) Length = 2080 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = +2 Query: 149 DPSTGARLGKGEGFAELEYGMLRYMGAIDDSTMVVTTVHDKQLVDDIPVEKLL 307 DP T GKGEG A Y G + S H +Q V+D+P + +L Sbjct: 537 DPYTELNTGKGEGVA--------YRGRLLLSLETKLVEHSEQKVEDLPADDIL 581
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 29.3 bits (64), Expect = 10.0 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 216 RSIPYSSSANPSPFPSRAPVLGSTATDPMTIRSTL 112 +S P S+S +PS FPS A S + P T +TL Sbjct: 147 QSAPSSASVSPSIFPSPAQSFASISASPSTPTTTL 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,567,628 Number of Sequences: 219361 Number of extensions: 1910944 Number of successful extensions: 4786 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4781 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
