ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd14o23 |
|---|---|
| Clone Library Name | barley_pub |
>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)| [Contains: MAP1 light chain LC1] Length = 2459 Score = 32.3 bits (72), Expect = 1.0 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +2 Query: 341 QTPFLYEQTSLSCKKGSCPSPRNYYAPKNGSPKTPKN 451 QTP +++T +S K CP P + +P + SPKT K+ Sbjct: 1587 QTPTTFQETEMSPSKEECPRPMS-ISPPDFSPKTAKS 1622
>IAA6_ORYSA (Q8LQ74) Auxin-responsive protein IAA6 (Indoleacetic acid-induced| protein 6) Length = 335 Score = 32.3 bits (72), Expect = 1.0 Identities = 26/98 (26%), Positives = 39/98 (39%) Frame = +2 Query: 200 SSGAGHAVVSAVEDKSALEDDSKGVQHDPNRPMDKHRCRKTCKQHKKQTPFLYEQTSLSC 379 ++GA + VEDK+ +D K + R C + + + Sbjct: 97 TTGAKRGFIDTVEDKTEGYNDQK------------QQARAGCGKELAVEEMIAAVSER-- 142 Query: 380 KKGSCPSPRNYYAPKNGSPKTPKNHLQQTEGLLMLQPV 493 KKG CP P P +G+P TP + QT+G PV Sbjct: 143 KKGCCPPP----PPPHGAPATPARNRPQTQGRGAAAPV 176
>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1| light chain LC1] Length = 2468 Score = 32.3 bits (72), Expect = 1.0 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +2 Query: 341 QTPFLYEQTSLSCKKGSCPSPRNYYAPKNGSPKTPKN 451 QTP +++T +S K CP P + +P + SPKT K+ Sbjct: 1596 QTPTTFQETEMSPSKEECPRPMS-ISPPDFSPKTAKS 1631
>MAP1B_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2)| (MAP1(X)) [Contains: MAP1 light chain LC1] Length = 2464 Score = 32.3 bits (72), Expect = 1.0 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +2 Query: 341 QTPFLYEQTSLSCKKGSCPSPRNYYAPKNGSPKTPKN 451 QTP +++T +S K CP P + +P + SPKT K+ Sbjct: 1592 QTPTTFQETEMSPSKEECPRPMS-ISPPDFSPKTAKS 1627
>INT2_HUMAN (Q9H0H0) Integrator complex subunit 2 (Int2)| Length = 1204 Score = 25.8 bits (55), Expect(2) = 1.4 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 378 QDKLVCSYRNGVCFLCCL 325 +D L+C+ R C +CCL Sbjct: 983 EDNLLCNLREVQCLICCL 1000 Score = 24.6 bits (52), Expect(2) = 1.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 278 AGHPCYHLLVHFYPRLLKQPHVLLQM 201 AG P H+ + F P L+ QP + Q+ Sbjct: 1030 AGIPSMHICLDFIPELIAQPELEKQI 1055
>INT2_MOUSE (Q80UK8) Integrator complex subunit 2 (Int2)| Length = 1198 Score = 25.8 bits (55), Expect(2) = 1.4 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 378 QDKLVCSYRNGVCFLCCL 325 +D L+C+ R C +CCL Sbjct: 977 EDNLLCNLREVQCLICCL 994 Score = 24.6 bits (52), Expect(2) = 1.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 278 AGHPCYHLLVHFYPRLLKQPHVLLQM 201 AG P H+ + F P L+ QP + Q+ Sbjct: 1024 AGIPSMHICLDFIPELIAQPELEKQI 1049
>INT2_CHICK (Q5ZKU4) Integrator complex subunit 2 (Int2)| Length = 1192 Score = 25.8 bits (55), Expect(2) = 1.4 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = -1 Query: 378 QDKLVCSYRNGVCFLCCL 325 +D L+C+ R C +CCL Sbjct: 971 EDSLLCNLREVQCLICCL 988 Score = 24.6 bits (52), Expect(2) = 1.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 278 AGHPCYHLLVHFYPRLLKQPHVLLQM 201 AG P H+ + F P L+ QP + Q+ Sbjct: 1018 AGIPSMHICLDFIPELIAQPELEKQI 1043
>SPF30_MOUSE (Q8BGT7) Survival of motor neuron-related splicing factor 30| (SMN-related protein) (30 kDa splicing factor SMNrp) (Survival motor neuron domain-containing protein 1) Length = 238 Score = 31.2 bits (69), Expect = 2.3 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 16/97 (16%) Frame = +2 Query: 101 ATNRVVSSNRHKHSGK--DSPVSVWQK--------VEKPDKENSSGA------GHAVVSA 232 A++ +S + HS K D ++VW + +E+ D+EN + A G+A V+ Sbjct: 59 ASSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTP 118 Query: 233 VEDKSALEDDSKGVQHDPNRPMDKHRCRKTCKQHKKQ 343 + + +E+ K + N+PM K +++KK+ Sbjct: 119 LLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKK 155
>SPF30_HUMAN (O75940) Survival of motor neuron-related splicing factor 30| (SMN-related protein) (30 kDa splicing factor SMNrp) (Survival motor neuron domain-containing protein 1) Length = 238 Score = 31.2 bits (69), Expect = 2.3 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 16/97 (16%) Frame = +2 Query: 101 ATNRVVSSNRHKHSGK--DSPVSVWQK--------VEKPDKENSSGA------GHAVVSA 232 A++ +S + HS K D ++VW + +E+ D+EN + A G+A V+ Sbjct: 59 ASSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTP 118 Query: 233 VEDKSALEDDSKGVQHDPNRPMDKHRCRKTCKQHKKQ 343 + + +E+ K + N+PM K +++KK+ Sbjct: 119 LLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKK 155
>VIT1_AEDAE (Q16927) Vitellogenin A1 precursor (VG) (PVG1) [Contains: Vitellin| light chain (VL); Vitellin heavy chain (VH)] Length = 2148 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = -2 Query: 389 YPFYKTNLFVHTETGFASCAVCMFFYNDVYPSAYLGRAGHPCYHLLVHFYP 237 YP++++N F H ++ + Y D Y +++ G P Y V YP Sbjct: 1645 YPYFESNFFYHGKSNYIKAEFEFAPYGDYYNASFFG----PSYAFQVQNYP 1691
>TRDN_CANFA (P82179) Triadin| Length = 700 Score = 30.8 bits (68), Expect = 3.0 Identities = 28/95 (29%), Positives = 40/95 (42%) Frame = +2 Query: 134 KHSGKDSPVSVWQKVEKPDKENSSGAGHAVVSAVEDKSALEDDSKGVQHDPNRPMDKHRC 313 K S KD+ + V +K E G V A K ++DSK + P+++H Sbjct: 330 KKSDKDTAIDVEKKEPGKAPETKQGTIKVVAQAAAKKDEKKEDSKKTK----TPVEEH-- 383 Query: 314 RKTCKQHKKQTPFLYEQTSLSCKKGSCPSPRNYYA 418 K KQ KK+ E S K+ S PS + A Sbjct: 384 PKGKKQEKKEK--YVEPAKSSKKEHSAPSEKQVKA 416
>SPY1_HUMAN (O43609) Sprouty homolog 1 (Spry-1)| Length = 319 Score = 30.4 bits (67), Expect = 3.9 Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 16/114 (14%) Frame = +2 Query: 113 VVSSNRHKHSGKDSPVSVWQKVEKPDKENSSGAGHAVVSAVEDKSALEDDSKGVQHDPNR 292 V ++ H+H+ + P S+ G A S ++ E G + P R Sbjct: 85 VNNNYEHRHTSHLGHAVLPSNARGPILSRSTSTGSAASSGSNSSASSEQGLLG-RSPPTR 143 Query: 293 PMDKHRCRKTCKQHKKQT----------------PFLYEQTSLSCKKGSCPSPR 406 P+ HR + + KQ F+ EQ CK G C +PR Sbjct: 144 PVPGHRSERAIRTQPKQLIVDDLKGSLKEDLTQHKFICEQCG-KCKCGECTAPR 196
>EFNA1_XENLA (P52794) Ephrin-A1 precursor (EPH-related receptor tyrosine kinase| ligand 1) (LERK-1) (xELF-a) Length = 216 Score = 30.0 bits (66), Expect = 5.1 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 23/140 (16%) Frame = +2 Query: 185 PDKENSSGAGHAV-------VSAVEDKSALEDDSKGVQHDPNRPMDKHRCRKTCKQHKKQ 343 P E S AGH V V E ++ V+ + N+P H K C++ +K Sbjct: 62 PYYEEGSVAGHTVERYTLFLVDYEEYETCKPKSKDQVRWECNKPFAPHGPEKFCEKFQKF 121 Query: 344 TPF------------LYEQTSLSCKKGSCPSPRNYYAPKNGSP----KTPKNHLQQTEGL 475 TPF Y + +C R + + + P TP++H+Q E Sbjct: 122 TPFTLGTEFREGRTYYYISKPIHYHGETCMRLRVHVSGRTTPPPVNVHTPRSHIQSDEPE 181 Query: 476 LMLQPVCDRDISDTSITTGT 535 + L P + ++ S GT Sbjct: 182 VPL-PGVMKSVAGNSAAPGT 200
>MUTS_LEGPL (Q5WVP6) DNA mismatch repair protein mutS| Length = 846 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/102 (21%), Positives = 44/102 (43%) Frame = +2 Query: 194 ENSSGAGHAVVSAVEDKSALEDDSKGVQHDPNRPMDKHRCRKTCKQHKKQTPFLYEQTSL 373 EN G G + ++ DK+A S+ ++ +P+ +H +T +Q K+ FL + SL Sbjct: 275 ENIHGGGEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAIIQTRQQAIKEIIFLQQDVSL 334 Query: 374 SCKKGSCPSPRNYYAPKNGSPKTPKNHLQQTEGLLMLQPVCD 499 C + P++ + + L++L + D Sbjct: 335 HQLIKQCADVERIVSRIALKSARPRDLVSLLQTLILLPAIHD 376
>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)| (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2377 Score = 29.6 bits (65), Expect = 6.7 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Frame = +2 Query: 98 TATNRVVSSNRHKHSGKDSPVS----VWQKVEKPDKENSSGAGHAVVS-AVEDKSALEDD 262 +AT V SS + KD PVS V K E P + SG+G A A ED+S +DD Sbjct: 149 SATTTVPSS-----TSKDRPVSQPSLVGSKEEPPPSRSGSGSGGASAKEAQEDRSQQQDD 203
>CO2_MOUSE (P21180) Complement C2 precursor (EC 3.4.21.43) (C3/C5 convertase)| [Contains: Complement C2b fragment; Complement C2a fragment] Length = 760 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Frame = +2 Query: 374 SCKKGSCPSPRNYYAPKNGSPKTPKNHLQQT-EGLLMLQPVCD--RDISDTSITTGTEKA 544 SC G PSP NG TP++ T M++ VC R ++ +S G Sbjct: 48 SCPLGRYPSPAWRKCQSNGQWLTPRSSSHHTLRSSRMVKAVCKPVRCLAPSSFENGIYFP 107 Query: 545 TLASYSLGSH 574 L SY +GS+ Sbjct: 108 RLVSYPVGSN 117
>Y241_MYCGE (P47483) Hypothetical protein MG241| Length = 620 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/55 (29%), Positives = 30/55 (54%) Frame = +3 Query: 180 KNLIRKTHLEQDMRLFQQSRIKVH*KMIARVSSTTQIGRWINIVVEKHANSTRSK 344 KN + + Q + F +++I H +++ + + Q +W N+V EK+ ST SK Sbjct: 178 KNNMHEISFMQIINCFSKTKINKHGEIVLKSCAFKQ--KWQNVVAEKYPFSTASK 230
>UBP53_HUMAN (Q70EK8) Inactive ubiquitin carboxyl-terminal hydrolase 53| (Ubiquitin-specific peptidase 53) Length = 1073 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 1/124 (0%) Frame = +2 Query: 104 TNRVVSSNR-HKHSGKDSPVSVWQKVEKPDKENSSGAGHAVVSAVEDKSALEDDSKGVQH 280 T+ + SSNR H H+G + +++ +K + A+E K+ L K ++ Sbjct: 410 TDNISSSNRSHSHTGVGKGPAKLSHIDQREKIKDISR-ECALKAIEQKNLLSSQRKDLEK 468 Query: 281 DPNRPMDKHRCRKTCKQHKKQTPFLYEQTSLSCKKGSCPSPRNYYAPKNGSPKTPKNHLQ 460 + + +HR L ++ + GS P+P + ++G+P HL Sbjct: 469 GQRKDLGRHR-------------DLVDEDLSHFQSGSPPAPNGF--KQHGNP-----HLY 508 Query: 461 QTEG 472 ++G Sbjct: 509 HSQG 512
>PKHA5_HUMAN (Q9HAU0) Pleckstrin homology domain-containing family A member 5| (Phosphoinositol 3-phosphate-binding protein 2) (PEPP-2) Length = 1116 Score = 29.6 bits (65), Expect = 6.7 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Frame = +2 Query: 182 KPDKENSSGAGHAVVSAVEDKSALEDDSKGVQHD-PNRPMDKHRCRKTCKQHKKQTPFLY 358 KP+ +N+ + +S +E+K ALE + G Q D +RP+ K K P Y Sbjct: 301 KPEIQNNQK--NKEMSKIEEKKALEAEKYGFQKDGQDRPLTKINSVKL-----NSLPSEY 353 Query: 359 EQTSLSCKKGSCPSPRNYYAPKNGSPKTPK 448 E S +CP+ +Y P N S K Sbjct: 354 ESGS------ACPAQTVHYRPINLSSSENK 377
>MUTS_LEGPH (Q5ZUJ3) DNA mismatch repair protein mutS| Length = 846 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = +2 Query: 194 ENSSGAGHAVVSAVEDKSALEDDSKGVQHDPNRPMDKHRCRKTCKQHKKQTPFLYEQTSL 373 EN G G + ++ DK+A S+ ++ +P+ +H +T +Q K+ FL + SL Sbjct: 275 ENIHGGGEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAIIQTRQQAIKEIIFLQQDVSL 334
>MUTS_LEGPA (Q5X4B2) DNA mismatch repair protein mutS| Length = 846 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = +2 Query: 194 ENSSGAGHAVVSAVEDKSALEDDSKGVQHDPNRPMDKHRCRKTCKQHKKQTPFLYEQTSL 373 EN G G + ++ DK+A S+ ++ +P+ +H +T +Q K+ FL + SL Sbjct: 275 ENIHGGGEHCLLSILDKTACAMGSRLLKRWLGKPLKQHAIIQTRQQAIKEIIFLQQDVSL 334
>NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nup124)| Length = 1159 Score = 29.3 bits (64), Expect = 8.7 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Frame = +2 Query: 92 NMTATNRVVSSNRHKHSGKDSPVSVWQKVEKPDKENSSGAG---HAVVSAVEDKSALEDD 262 N T R S + K V+ + E K+N S +G H ++ + DK E + Sbjct: 198 NPTCEKRKPSRSPSPMLSKKKSVARASENEPSAKQNKSFSGNDSHKSLTDIRDKENGETE 257 Query: 263 SKGVQHDPNRPMDKHRCRKTCKQHKKQTPFLYE 361 H P HR + ++H++ P +YE Sbjct: 258 VSAKNHVP------HRSSRRRRRHQRLIPIIYE 284
>ACOX_PICPA (Q9Y7B1) Acyl-coenzyme A oxidase (EC 1.3.3.6) (Acyl-CoA oxidase)| Length = 719 Score = 29.3 bits (64), Expect = 8.7 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +3 Query: 324 ANSTRSKPRFCMNKQVCLVKRVVVRHRGTTMLLRMVAP 437 +NS K FC NKQVC VK ++ +GT + L + P Sbjct: 506 SNSNIDKELFCFNKQVCTVK-LINAIQGTIIRLGVRVP 542
>V51K_TYYVF (P09514) 51 kDa protein (ORF 6)| Length = 467 Score = 29.3 bits (64), Expect = 8.7 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +2 Query: 116 VSSNRHKHSGKDSPVSVWQKVEKPDKENSSG 208 V + R K G VS W+ ++ P+K NS G Sbjct: 233 VKTERPKRVGHSMAVSTWETIKLPEKGNSEG 263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,423,544 Number of Sequences: 219361 Number of extensions: 1534617 Number of successful extensions: 4722 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4575 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4716 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
