ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14m23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1170 bits (590), Expect = 0.0 Identities = 620/626 (99%), Gaps = 3/626 (0%) Strand = Plus / Plus Query: 4 ccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatgg 63 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 87 ccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatgg 145 Query: 64 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 205 Query: 124 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 265 Query: 184 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 325 Query: 244 agggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 303 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 agggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 385 Query: 304 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 445 Query: 364 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 acgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttct 505 Query: 424 acatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccc 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 acatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccc 565 Query: 484 tgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 tgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaat 625 Query: 544 cattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgagtgcc 603 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 626 cattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcat-gatgagtgcc 684 Query: 604 ggagagctgggagagtgggaacgctg 629 |||||||| ||||||||||||||||| Sbjct: 685 ggagagct-ggagagtgggaacgctg 709
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 1045 bits (527), Expect = 0.0 Identities = 604/626 (96%), Gaps = 4/626 (0%) Strand = Plus / Plus Query: 2 caccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagat 61 ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| Sbjct: 6 caccagcacagccgcgc--atccaccgctgctagcaaggtcgagcaagcagcacagagat 63 Query: 62 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 121 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 64 ggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttcctcgg 123 Query: 122 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggc 183 Query: 182 caacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtg 241 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 184 caacaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtg 243 Query: 242 gaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcat 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 gaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcat 303 Query: 302 cgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctc 361 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 304 cgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctcagctc 363 Query: 362 ctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggctt 421 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 364 atacgagtacgtcagccagggactcaagaagtacgacttcgacaacaccatgggaggctt 423 Query: 422 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 481 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 424 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaagaacttcatgac 483 Query: 482 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 484 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 543 Query: 542 atcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgagtg 601 ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 544 atccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcat-gatgagtg 602 Query: 602 ccggagagctgggagagtgggaacgc 627 |||||||||| ||||||||| ||||| Sbjct: 603 ccggagagct-ggagagtggcaacgc 627
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 848 bits (428), Expect = 0.0 Identities = 451/456 (98%), Gaps = 2/456 (0%) Strand = Plus / Plus Query: 174 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 360 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcat- 419 Query: 594 gatgagtgccggagagctgggagagtgggaacgctg 629 |||||||||||||||||| ||||||||||||||||| Sbjct: 420 gatgagtgccggagagct-ggagagtgggaacgctg 454
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Plus Query: 95 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 155 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 215 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 275 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 334 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 335 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 395 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877 Query: 455 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 497 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 387 bits (195), Expect = e-104 Identities = 331/375 (88%), Gaps = 1/375 (0%) Strand = Plus / Plus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 358 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 359 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 418 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 419 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 478 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 479 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 538 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 3238 Query: 539 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatga 598 || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 3239 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcat-gatga 3297 Query: 599 gtgccggagagctgg 613 | ||||| ||||||| Sbjct: 3298 gcgccggtgagctgg 3312 Score = 174 bits (88), Expect = 2e-40 Identities = 88/88 (100%) Strand = Plus / Plus Query: 496 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 556 agcttgtgttcgccaagatgggcatcaa 583 |||||||||||||||||||||||||||| Sbjct: 6130 agcttgtgttcgccaagatgggcatcaa 6157 Score = 172 bits (87), Expect = 9e-40 Identities = 94/95 (98%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 2 caccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagat 61 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 5305 caccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagat 5363 Query: 62 ggctgctgccttctcctccaccgtcggggctccgg 96 ||||||||||||||||||||||||||||||||||| Sbjct: 5364 ggctgctgccttctcctccaccgtcggggctccgg 5398 Score = 60.0 bits (30), Expect = 9e-06 Identities = 44/46 (95%), Gaps = 2/46 (4%) Strand = Plus / Plus Query: 584 ccccatcatggatgagtgccggagagctgggagagtgggaacgctg 629 |||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 6408 ccccatcatg-atgagtgccggagagct-ggagagtgggaacgctg 6451
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 539 bits (272), Expect = e-150 Identities = 354/380 (93%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 557 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcat- 615 Query: 594 gatgagtgccggagagctgg 613 |||||||||||||||||||| Sbjct: 616 gatgagtgccggagagctgg 635 Score = 228 bits (115), Expect = 2e-56 Identities = 139/147 (94%) Strand = Plus / Plus Query: 56 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 115 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 76 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135 Query: 116 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 175 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195 Query: 176 caaggccaacaggttcacagtcatggc 202 |||||||||||||||||| |||||||| Sbjct: 196 caaggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 519 bits (262), Expect = e-144 Identities = 351/380 (92%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 547 caggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaacccaatcat- 605 Query: 594 gatgagtgccggagagctgg 613 |||||||||||||||||||| Sbjct: 606 gatgagtgccggagagctgg 625 Score = 222 bits (112), Expect = 1e-54 Identities = 138/147 (93%) Strand = Plus / Plus Query: 56 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 115 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| Sbjct: 66 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125 Query: 116 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 175 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185 Query: 176 caaggccaacaggttcacagtcatggc 202 |||||||||||||||||| |||||||| Sbjct: 186 caaggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 460 bits (232), Expect = e-126 Identities = 344/380 (90%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 504 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcat- 562 Query: 594 gatgagtgccggagagctgg 613 |||||| ||||||||||||| Sbjct: 563 gatgagcgccggagagctgg 582 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 460 bits (232), Expect = e-126 Identities = 344/380 (90%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 541 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcat- 599 Query: 594 gatgagtgccggagagctgg 613 |||||| ||||||||||||| Sbjct: 600 gatgagcgccggagagctgg 619 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 460 bits (232), Expect = e-126 Identities = 344/380 (90%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 540 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcat- 598 Query: 594 gatgagtgccggagagctgg 613 |||||| ||||||||||||| Sbjct: 599 gatgagcgccggagagctgg 618 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 460 bits (232), Expect = e-126 Identities = 344/380 (90%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 324 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcat- 382 Query: 594 gatgagtgccggagagctgg 613 |||||| ||||||||||||| Sbjct: 383 gatgagcgccggagagctgg 402
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 460 bits (232), Expect = e-126 Identities = 344/380 (90%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 545 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcat- 603 Query: 594 gatgagtgccggagagctgg 613 |||||| ||||||||||||| Sbjct: 604 gatgagcgccggagagctgg 623 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 460 bits (232), Expect = e-126 Identities = 344/380 (90%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 539 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcat- 597 Query: 594 gatgagtgccggagagctgg 613 |||||| ||||||||||||| Sbjct: 598 gatgagcgccggagagctgg 617 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 452 bits (228), Expect = e-124 Identities = 343/380 (90%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 512 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcat- 570 Query: 594 gatgagtgccggagagctgg 613 |||||| ||||||||||||| Sbjct: 571 gatgagcgccggagagctgg 590 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 452 bits (228), Expect = e-124 Identities = 343/380 (90%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 ||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || |||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 552 cagggaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcat- 610 Query: 594 gatgagtgccggagagctgg 613 |||||| ||||||||||||| Sbjct: 611 gatgagcgccggagagctgg 630 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 394 bits (199), Expect = e-106 Identities = 332/375 (88%), Gaps = 1/375 (0%) Strand = Plus / Plus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 358 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 359 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 418 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 419 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 478 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 479 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 538 ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| || || Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaagggacaggg 516 Query: 539 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatga 598 || || |||||||| ||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 517 caagtcgttccagtgcgagctggtgttcgccaagatgggcatcaaccccatcat-gatga 575 Query: 599 gtgccggagagctgg 613 | ||||||||||||| Sbjct: 576 gcgccggagagctgg 590 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 59 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 118 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 119 cgggaagaagctcaagaagcagg 141 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 387 bits (195), Expect = e-104 Identities = 331/375 (88%), Gaps = 1/375 (0%) Strand = Plus / Plus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 358 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 359 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 418 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 419 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 478 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 479 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 538 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 669 Query: 539 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatga 598 || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 670 caagtcgttccagtgtgagctggtgttcgccaagatgggcatcaaccccatcat-gatga 728 Query: 599 gtgccggagagctgg 613 | ||||| ||||||| Sbjct: 729 gcgccggtgagctgg 743
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 325 bits (164), Expect = 1e-85 Identities = 234/256 (91%), Gaps = 1/256 (0%) Strand = Plus / Plus Query: 358 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 417 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 418 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 477 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 478 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 537 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506 Query: 538 gaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatg 597 ||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct: 507 gaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaaccccatcat-gatg 565 Query: 598 agtgccggagagctgg 613 || ||||||||||||| Sbjct: 566 agcgccggagagctgg 581 Score = 172 bits (87), Expect = 9e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 294 aagggcatcgtggactcgctcttccaggc 322 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 392 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 451 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 452 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 511 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 512 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 571 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 109256 Query: 572 gatgggcatcaa 583 |||||| ||||| Sbjct: 109255 gatggggatcaa 109244 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 354 ctcagctcctacgagtacgtcagccaggg 382 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 349 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 105 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 164 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 165 ggcaagagctccaaggccaacaggttca 192 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 58 agatggctgctgccttctcctccaccgtcggggctccgg 96 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 546 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 583 ||||||||||| || || |||||||||||||| ||||| Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaa 112869
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 392 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 451 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 452 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 511 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 512 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 571 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 31133 Query: 572 gatgggcatcaa 583 |||||| ||||| Sbjct: 31132 gatggggatcaa 31121 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 354 ctcagctcctacgagtacgtcagccaggg 382 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 349 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 105 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 164 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 165 ggcaagagctccaaggccaacaggttca 192 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 58 agatggctgctgccttctcctccaccgtcggggctccgg 96 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 546 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 583 ||||||||||| || || |||||||||||||| ||||| Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaa 34746
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 392 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 451 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 452 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 511 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 512 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 571 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28304395 Query: 572 gatgggcatcaa 583 |||||| ||||| Sbjct: 28304394 gatggggatcaa 28304383 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 354 ctcagctcctacgagtacgtcagccaggg 382 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 349 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 105 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 164 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 165 ggcaagagctccaaggccaacaggttca 192 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 58 agatggctgctgccttctcctccaccgtcggggctccgg 96 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 546 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 583 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28308008
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 270 bits (136), Expect = 5e-69 Identities = 178/192 (92%) Strand = Plus / Minus Query: 392 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 451 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 452 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 511 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 512 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 571 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28286844 Query: 572 gatgggcatcaa 583 |||||| ||||| Sbjct: 28286843 gatggggatcaa 28286832 Score = 176 bits (89), Expect = 6e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 354 ctcagctcctacgagtacgtcagccaggg 382 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 349 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 105 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 164 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 165 ggcaagagctccaaggccaacaggttca 192 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 58 agatggctgctgccttctcctccaccgtcggggctccgg 96 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 546 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 583 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28290457
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 262 bits (132), Expect = 1e-66 Identities = 319/380 (83%), Gaps = 1/380 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatg 593 || |||||||| ||||| || ||||| || ||||||||||||||||||| ||||||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatcacccccatcat- 571 Query: 594 gatgagtgccggagagctgg 613 |||||| ||||| ||||||| Sbjct: 572 gatgagcgccggcgagctgg 591 Score = 91.7 bits (46), Expect = 3e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 60 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 113 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 114 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 170 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 171 agctcca 177 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 262 bits (132), Expect = 1e-66 Identities = 292/344 (84%), Gaps = 1/344 (0%) Strand = Plus / Plus Query: 270 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 329 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 330 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 389 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 390 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 449 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 450 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 509 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474 Query: 510 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 569 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 534 Query: 570 aagatgggcatcaaccccatcatggatgagtgccggagagctgg 613 |||||||| |||||||||||||| |||||| ||||| ||||||| Sbjct: 535 aagatgggaatcaaccccatcat-gatgagcgccggtgagctgg 577
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 262 bits (132), Expect = 1e-66 Identities = 292/344 (84%), Gaps = 1/344 (0%) Strand = Plus / Plus Query: 270 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 329 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 330 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 389 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 390 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 449 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 450 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 509 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337 Query: 510 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 569 |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||| Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttcgcc 397 Query: 570 aagatgggcatcaaccccatcatggatgagtgccggagagctgg 613 |||||||| |||||||||||||| |||||| ||||| ||||||| Sbjct: 398 aagatgggaatcaaccccatcat-gatgagcgccggtgagctgg 440
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 254 bits (128), Expect = 3e-64 Identities = 291/344 (84%), Gaps = 1/344 (0%) Strand = Plus / Plus Query: 270 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 329 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 330 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 389 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 390 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 449 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 450 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 509 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367 Query: 510 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcc 569 |||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||| Sbjct: 368 ttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaacttgtgttcgcc 427 Query: 570 aagatgggcatcaaccccatcatggatgagtgccggagagctgg 613 |||||||| |||||||||||||| |||||| ||||| ||||||| Sbjct: 428 aagatgggaatcaaccccatcat-gatgagcgccggtgagctgg 470
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 216 bits (109), Expect = 7e-53 Identities = 305/369 (82%), Gaps = 1/369 (0%) Strand = Plus / Plus Query: 240 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 299 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 300 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 359 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 360 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 419 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 420 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 479 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 480 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 539 ||||| || ||||| ||| | || || ||||||||||| ||||||||||| ||||||||| Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579 Query: 540 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgag 599 ||||| ||||| ||||||||||| || ||||||||||| ||||||||||| || |||||| Sbjct: 580 aaatctttccaatgtgagcttgtctttgccaagatgggaatcaaccccattat-gatgag 638 Query: 600 tgccggaga 608 ||||||||| Sbjct: 639 tgccggaga 647
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 202 bits (102), Expect = 1e-48 Identities = 286/349 (81%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 413 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 414 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 473 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 474 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 533 |||||||||||||| ||||||||| | || |||||| |||||||| ||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512 Query: 534 caaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatca 582 || |||||||| ||||| || ||||| || ||||||||||||||||||| Sbjct: 513 cagggaaaatcgttccaatgcgagctggtcttcgccaagatgggcatca 561 Score = 91.7 bits (46), Expect = 3e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 60 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 113 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 114 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 170 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 171 agctcca 177 ||||||| Sbjct: 141 agctcca 147
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 198 bits (100), Expect = 2e-47 Identities = 185/212 (87%), Gaps = 1/212 (0%) Strand = Plus / Plus Query: 402 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 461 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 462 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 521 || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 522 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 581 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 435 Query: 582 aaccccatcatggatgagtgccggagagctgg 613 ||||||||||| ||||||||||||||| |||| Sbjct: 436 aaccccatcat-gatgagtgccggagaactgg 466
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 736 at-gatgagtgctggagagct 755
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 735 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 736 at-gatgagtgctggagagct 755
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 765 at-gatgagtgctggagagct 784
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 647 at-gatgagtgctggagagct 666
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 502 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 561 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 562 at-gatgagtgctggagagct 581
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 650 at-gatgagtgctggagagct 669
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 579 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 638 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 639 at-gatgagtgctggagagct 658
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 646 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 647 at-gatgagtgctggagagct 666
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 649 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 650 at-gatgagtgctggagagct 669
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 192 bits (97), Expect = 1e-45 Identities = 221/261 (84%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 590 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| ||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaatc 764 Query: 591 atggatgagtgccggagagct 611 || ||||||||| |||||||| Sbjct: 765 at-gatgagtgctggagagct 784
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 192 bits (97), Expect = 1e-45 Identities = 167/189 (88%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 420 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 479 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 480 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 539 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 540 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgag 599 ||||| ||||||||||||||||| || ||||||||||| |||||||||||||| |||||| Sbjct: 596 aaatctttccagtgtgagcttgtctttgccaagatgggaatcaaccccatcat-gatgag 654 Query: 600 tgccggaga 608 ||||||||| Sbjct: 655 tgccggaga 663
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 192 bits (97), Expect = 1e-45 Identities = 212/249 (85%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 360 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 419 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 420 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 479 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 480 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 539 | |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 540 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgag 599 ||||||||||||||||| ||||| ||| |||||||| ||||||||||| || |||||| Sbjct: 576 aaatcattccagtgtgaacttgtcttcagaaagatgggaatcaaccccattat-gatgag 634 Query: 600 tgccggaga 608 ||| ||||| Sbjct: 635 tgctggaga 643
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 190 bits (96), Expect = 4e-45 Identities = 184/212 (86%), Gaps = 1/212 (0%) Strand = Plus / Plus Query: 402 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 461 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 462 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 521 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 522 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 581 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 436 Query: 582 aaccccatcatggatgagtgccggagagctgg 613 ||||||||||| ||||||||||||||| |||| Sbjct: 437 aaccccatcat-gatgagtgccggagaactgg 467
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 188 bits (95), Expect = 2e-44 Identities = 168/191 (87%), Gaps = 1/191 (0%) Strand = Plus / Plus Query: 423 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 482 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 483 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 542 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206 Query: 543 tcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgagtgc 602 || ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||| || Sbjct: 207 tccttccaatgtgaacttgtgttcgccaagatgggaatcaaccccatcat-gatgagcgc 265 Query: 603 cggagagctgg 613 ||| ||||||| Sbjct: 266 cggtgagctgg 276
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 182 bits (92), Expect = 9e-43 Identities = 165/188 (87%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 421 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 480 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 481 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 540 | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 541 aatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgagt 600 |||| ||||| ||||||||||||||||||||| | || || ||||||||||| ||||||| Sbjct: 750 aatccttccaatgtgagcttgtgttcgccaagttaggaataaaccccatcat-gatgagt 808 Query: 601 gccggaga 608 |||||||| Sbjct: 809 gccggaga 816
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 180 bits (91), Expect = 4e-42 Identities = 191/223 (85%), Gaps = 1/223 (0%) Strand = Plus / Plus Query: 391 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 450 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 451 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 510 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 511 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 570 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 571 agatgggcatcaaccccatcatggatgagtgccggagagctgg 613 ||||||| |||||||||||||| ||||||||| |||||||||| Sbjct: 611 agatgggaatcaaccccatcat-gatgagtgctggagagctgg 652
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 180 bits (91), Expect = 4e-42 Identities = 191/223 (85%), Gaps = 1/223 (0%) Strand = Plus / Plus Query: 391 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 450 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 451 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 510 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 511 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 570 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 571 agatgggcatcaaccccatcatggatgagtgccggagagctgg 613 ||||||| |||||||||||||| ||||||||| |||||||||| Sbjct: 611 agatgggaatcaaccccatcat-gatgagtgctggagagctgg 652
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 178 bits (90), Expect = 1e-41 Identities = 166/190 (87%), Gaps = 1/190 (0%) Strand = Plus / Plus Query: 420 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 479 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 480 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 539 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 540 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgag 599 || || ||||| ||||||||||| || ||||||||||| |||||||||||||| |||||| Sbjct: 589 aagtctttccaatgtgagcttgtctttgccaagatgggaatcaaccccatcat-gatgag 647 Query: 600 tgccggagag 609 ||| |||||| Sbjct: 648 tgctggagag 657 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 240 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 174 bits (88), Expect = 2e-40 Identities = 155/176 (88%), Gaps = 1/176 (0%) Strand = Plus / Plus Query: 438 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 497 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 498 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 557 | || |||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141 Query: 558 cttgtgttcgccaagatgggcatcaaccccatcatggatgagtgccggagagctgg 613 || || ||||||||||||||||||| ||||||||| |||||| ||||| ||||||| Sbjct: 142 ctggtcttcgccaagatgggcatcacccccatcat-gatgagcgccggcgagctgg 196
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 172 bits (87), Expect = 9e-40 Identities = 187/219 (85%), Gaps = 1/219 (0%) Strand = Plus / Plus Query: 391 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 450 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 451 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 510 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 511 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 570 | ||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || |||| Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttgtctttgcca 615 Query: 571 agatgggcatcaaccccatcatggatgagtgccggagag 609 ||||||| |||||||||||||| ||||||||| |||||| Sbjct: 616 agatgggaatcaaccccatcat-gatgagtgctggagag 653
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 168 bits (85), Expect = 1e-38 Identities = 164/189 (86%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 420 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 479 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 480 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 539 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 540 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgag 599 ||||| ||||||||||||||||| ||| |||||||| |||||||| || || |||||| Sbjct: 546 aaatctttccagtgtgagcttgtcttcagaaagatgggaatcaaccctattat-gatgag 604 Query: 600 tgccggaga 608 ||||||||| Sbjct: 605 tgccggaga 613
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 167 bits (84), Expect = 6e-38 Identities = 166/192 (86%), Gaps = 1/192 (0%) Strand = Plus / Plus Query: 417 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 476 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 477 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 536 |||| |||||||||||||| | ||||||||||||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 537 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggat 596 || ||||||||||| ||||||||||| ||| |||||||| ||||||||||| || ||| Sbjct: 554 ggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattat-gat 612 Query: 597 gagtgccggaga 608 |||||| ||||| Sbjct: 613 gagtgctggaga 624
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 163 bits (82), Expect = 9e-37 Identities = 164/190 (86%), Gaps = 1/190 (0%) Strand = Plus / Plus Query: 419 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 478 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 479 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 538 || | |||| ||||||||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 539 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatga 598 ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 634 taaatccttccaatgtgagcttgtgttcgccaagatgggaatcaaccccatcat-gatga 692 Query: 599 gtgccggaga 608 |||| ||||| Sbjct: 693 gtgcgggaga 702
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 163 bits (82), Expect = 9e-37 Identities = 220/262 (83%), Gaps = 3/262 (1%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 411 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttggg-tatctggggaggcaa 529 |||||| |||| ||||| ||||||||| | ||||| || ||||| | || |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggctctc-ggggaggcaa 569 Query: 530 gggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccat 589 |||||||| ||||| ||||||||||||||||| | ||||||||||| |||||||| || Sbjct: 570 aggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaacccaat 629 Query: 590 catggatgagtgccggagagct 611 ||| ||||||||| |||||||| Sbjct: 630 cat-gatgagtgctggagagct 650
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 145 bits (73), Expect = 2e-31 Identities = 161/189 (85%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 420 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 479 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 480 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 539 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 540 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgag 599 ||||||||||| ||||||||||| ||| |||||||| |||||||| || || |||||| Sbjct: 593 aaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattat-gatgag 651 Query: 600 tgccggaga 608 ||| ||||| Sbjct: 652 tgctggaga 660
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 135 bits (68), Expect = 2e-28 Identities = 156/184 (84%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 422 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 481 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 482 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 541 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275 Query: 542 atcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgagtg 601 || ||||| ||||||||||| || || || |||| |||||||| || || |||||||| Sbjct: 276 gtccttccaatgtgagcttgtatttgcaaaattgggaatcaacccaattat-gatgagtg 334 Query: 602 ccgg 605 |||| Sbjct: 335 ccgg 338
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 135 bits (68), Expect = 2e-28 Identities = 153/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Plus Query: 429 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 488 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 489 aacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattc 548 ||||| ||| | || |||||||||||||| ||||||||||| ||||| || || || ||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttc 604 Query: 549 cagtgtgagcttgtgttcgccaagatgggcatcaaccccatcatggatgagtgccggaga 608 ||||| |||||||| || ||||||||| | |||| ||| ||||| ||||||||||||||| Sbjct: 605 cagtgcgagcttgtctttgccaagatgagaatcagccctatcat-gatgagtgccggaga 663 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 263 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 322 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 496 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 555 |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 556 agcttgtgttcgccaag 572 ||||||||||||||||| Sbjct: 2298 agcttgtgttcgccaag 2314 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 419 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 478 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 479 gaccctgcccaacatcaag 497 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 504 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 563 ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245 Query: 564 ttcgccaagatgggcatcaa 583 || ||||||||||| ||||| Sbjct: 246 tttgccaagatgggaatcaa 265 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 420 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 479 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 480 ac 481 || Sbjct: 66 ac 67
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 501 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 560 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674 Query: 561 gtgttcgccaagatgggcatcaa 583 || | ||||||||||| ||||| Sbjct: 14673 gtcatggccaagatgggtatcaa 14651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 423 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 482 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 483 ctgcccaacatcaag 497 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 501 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 560 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609 Query: 561 gtgttcgccaagatgggcatcaa 583 || | ||||||||||| ||||| Sbjct: 2610 gtcatggccaagatgggtatcaa 2632 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 423 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 482 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 483 ctgcccaacatcaag 497 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 495 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 554 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 555 gagcttgtgttcgccaagatgggcatca 582 |||||||| || ||||||||||| |||| Sbjct: 7481 gagcttgtatttgccaagatgggaatca 7454
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 513 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 572 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874 Query: 573 atgggcatcaa 583 ||||||||||| Sbjct: 104873 atgggcatcaa 104863
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 513 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 572 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899 Query: 573 atgggcatcaa 583 ||||||||||| Sbjct: 83898 atgggcatcaa 83888 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 402 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 457 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/83 (87%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 529 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccca 588 |||| ||||||||||| ||||| ||||||||| || ||||||||||| |||||||||| Sbjct: 7 agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaacccca 66 Query: 589 tcatggatgagtgccggagagct 611 |||| ||||||||| |||||||| Sbjct: 67 tcat-gatgagtgctggagagct 88
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 73.8 bits (37), Expect = 6e-10 Identities = 71/81 (87%), Gaps = 1/81 (1%) Strand = Plus / Plus Query: 528 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccc 587 ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |||| || Sbjct: 1 aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatcactcct 60 Query: 588 atcatggatgagtgccggaga 608 ||||| ||||||||||||||| Sbjct: 61 atcat-gatgagtgccggaga 80
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 471 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 530 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 531 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccc 586 ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaaccc 637
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 417 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 476 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 477 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 536 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 537 ggaaa 541 ||||| Sbjct: 1248 ggaaa 1252
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 466 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 525 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 526 gcaaggg 532 ||||||| Sbjct: 466 gcaaggg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 482 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 532 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 265 ccgacgaccagcaggacatcacc 287 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 actcgctcttccaggcgcccac 328 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 gaagaagctcaagaagcaggtg 143 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA Length = 929 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 531 cagcacagagatggctgctgc 511
>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA Length = 939 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 541 cagcacagagatggctgctgc 521
>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA Length = 992 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 595 cagcacagagatggctgctgc 575
>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA Length = 1318 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 932 cagcacagagatggctgctgc 912
>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA Length = 1006 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 609 cagcacagagatggctgctgc 589
>gb|AC005330.2|AC005330 Homo sapiens chromosome 19, cosmid R34047 and overlapping PCR product, complete sequence Length = 41257 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 604 ggagagctgggagagtgggaa 624 ||||||||||||||||||||| Sbjct: 19799 ggagagctgggagagtgggaa 19819
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 catggcagcggagaacatcg 216 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 atctccgacgaccagcaggacatc 284 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gcagcggagaacatcgacga 220 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcaagagctccaaggccaac 185 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ctgccttctcctccaccgtc 86 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 ccctgcccaacatcaagatc 500 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 catggcagcggagaacatcg 216 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctgctgccttctcctccacc 83 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctgctgccttctcctccacc 83 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctgctgccttctcctccacc 83 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gaagaagctcaagaagcagg 141 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 ttccagtgtgagcttgtgtt 565 |||||||||||||||||||| Sbjct: 97287 ttccagtgtgagcttgtgtt 97268
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 ggcttctacatcgctcctgctttc 440 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccagagggaagggcatcgtg 305 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 gtccatctctccaaaaactt 475 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence Length = 177104 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 acagagatggctgctgcctt 73 |||||||||||||||||||| Sbjct: 121162 acagagatggctgctgcctt 121143
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcaagagctccaaggccaac 185 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccagagggaagggcatcgtg 305 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence Length = 180261 Score = 40.1 bits (20), Expect = 8.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 37 aaggtcgaccaagcagcacagagatggctgctgccttctc 76 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 ccctgcccaacatcaagatc 500 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 caaggccaacaggttcacagtcat 199 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgatatctccgacgaccagc 276 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 ccctgcccaacatcaagatc 500 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302 (ENSANGG00000011813), partial mRNA Length = 1773 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 tcgccaagatgggcatcaac 584 |||||||||||||||||||| Sbjct: 641 tcgccaagatgggcatcaac 660
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 ggcttctacatcgctcctgctttc 440 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 caaggccaacaggttcacagtcat 199 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aagaagctcaagaagcaggt 142 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete sequences Length = 162128 Score = 40.1 bits (20), Expect = 8.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 37 aaggtcgaccaagcagcacagagatggctgctgccttctc 76 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 ccctgcccaacatcaagatc 500 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 gagatggctgctgccttctcctcc 80 ||||||||||||||||||| |||| Sbjct: 472845 gagatggctgctgccttctgctcc 472822
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 ccctgcccaacatcaagatc 500 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,197,345 Number of Sequences: 3902068 Number of extensions: 5197345 Number of successful extensions: 97254 Number of sequences better than 10.0: 125 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96635 Number of HSP's gapped (non-prelim): 582 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
