ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14l24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189655.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 717 Score = 111 bits (56), Expect = 3e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 305 gaagggcctgttcgtgaaggtcaacatggacggcgtccccatcgggcggaaggtggagct 364 ||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||| || || Sbjct: 348 gaagggcatgttcgtgaagatcaacatggacggcgtcccgatcgggaggaaggtcgacct 407 Query: 365 caagcagcacggcagctacgctgagctctcggccaccgtcgacaacctcttccgcagcct 424 | | | ||||| ||||||| ||||||| ||| |||||||||| ||||||||| |||| Sbjct: 408 cgcggcgtacggcggctacgcccagctctccgccgccgtcgacaagctcttccgcggcct 467 Query: 425 cctcgccgctca 436 ||| |||||||| Sbjct: 468 cctagccgctca 479 Score = 95.6 bits (48), Expect = 2e-16 Identities = 104/120 (86%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 470 cggcggcgagtacacgcttggtgtacgaggacgacgagggcgacaggatgctggttgggg 529 |||||||||||||||||| | | ||||||||||||||||||||| ||||||| || || | Sbjct: 534 cggcggcgagtacacgctcg-tctacgaggacgacgagggcgaccggatgctcgtcggcg 592 Query: 530 gatgtcccatggcacatgttcatcgtcacggcgaagaggctgcgagggctcaagagctcc 589 | || || ||||| |||||||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 593 -acgttccctggcagatgttcatcgccaccgcgaagaggctgcgcgtgctcaagagctcc 651 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 174 gtggggtggccgccggtgcgctcgttccggcggaacct 211 |||||||||||||||||||| ||||||||||||||||| Sbjct: 214 gtggggtggccgccggtgcggtcgttccggcggaacct 251
>dbj|AK100314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078N13, full insert sequence Length = 1795 Score = 111 bits (56), Expect = 3e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 305 gaagggcctgttcgtgaaggtcaacatggacggcgtccccatcgggcggaaggtggagct 364 ||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||| || || Sbjct: 980 gaagggcatgttcgtgaagatcaacatggacggcgtcccgatcgggaggaaggtcgacct 1039 Query: 365 caagcagcacggcagctacgctgagctctcggccaccgtcgacaacctcttccgcagcct 424 | | | ||||| ||||||| ||||||| ||| |||||||||| ||||||||| |||| Sbjct: 1040 cgcggcgtacggcggctacgcccagctctccgccgccgtcgacaagctcttccgcggcct 1099 Query: 425 cctcgccgctca 436 ||| |||||||| Sbjct: 1100 cctagccgctca 1111 Score = 95.6 bits (48), Expect = 2e-16 Identities = 104/120 (86%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 470 cggcggcgagtacacgcttggtgtacgaggacgacgagggcgacaggatgctggttgggg 529 |||||||||||||||||| | | ||||||||||||||||||||| ||||||| || || | Sbjct: 1166 cggcggcgagtacacgctcg-tctacgaggacgacgagggcgaccggatgctcgtcggcg 1224 Query: 530 gatgtcccatggcacatgttcatcgtcacggcgaagaggctgcgagggctcaagagctcc 589 | || || ||||| |||||||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 1225 -acgttccctggcagatgttcatcgccaccgcgaagaggctgcgcgtgctcaagagctcc 1283 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 174 gtggggtggccgccggtgcgctcgttccggcggaacct 211 |||||||||||||||||||| ||||||||||||||||| Sbjct: 846 gtggggtggccgccggtgcggtcgttccggcggaacct 883
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 103 bits (52), Expect = 6e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 305 gaagggcctgttcgtgaaggtcaacatggacggcgtccccatcgggcggaaggtggagct 364 ||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||| || || Sbjct: 4816896 gaagggcatgttcgtgaagatcaacatggacggcgtcccgatcgggaggaaggtcgacct 4816955 Query: 365 caagcagcacggcagctacgctgagctctcggccaccgtcgacaacctcttccgcagcct 424 | | | ||||| ||||||| ||||||| ||| |||||||||| ||||||||| |||| Sbjct: 4816956 cgcggcgtacggcggctacgcccagctctccgccgccgtcgacaagctcttccgcggcct 4817015 Query: 425 cctcgccg 432 ||| |||| Sbjct: 4817016 cctagccg 4817023 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 174 gtggggtggccgccggtgcgctcgttccggcggaacct 211 |||||||||||||||||||| ||||||||||||||||| Sbjct: 4816762 gtggggtggccgccggtgcggtcgttccggcggaacct 4816799 Score = 63.9 bits (32), Expect = 6e-07 Identities = 48/52 (92%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 470 cggcggcgagtacacgcttggtgtacgaggacgacgagggcgacaggatgct 521 |||||||||||||||||| | | ||||||||||||||||||||| ||||||| Sbjct: 4817179 cggcggcgagtacacgctcg-tctacgaggacgacgagggcgaccggatgct 4817229 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 174 gtggggtggccgccggtgcgctcgttccggcgga 207 |||||||||||||||||||| ||||||||||||| Sbjct: 6369119 gtggggtggccgccggtgcggtcgttccggcgga 6369152 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 545 atgttcatcgtcacggcgaagaggctgcgagggctcaagagctcc 589 |||||||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 4817332 atgttcatcgccaccgcgaagaggctgcgcgtgctcaagagctcc 4817376 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 312 ctgttcgtgaaggtcaacatggacggcgtccccatcgggcggaag 356 |||||||||||||| ||||||| |||||||| ||||| |||||| Sbjct: 10311820 ctgttcgtgaaggtgtacatggagggcgtcccgatcggccggaag 10311864 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgtcgtcgtccaaggaggac 245 |||||||||||||||||||| Sbjct: 23976904 cgtcgtcgtccaaggaggac 23976885
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 103 bits (52), Expect = 6e-19 Identities = 109/128 (85%) Strand = Plus / Plus Query: 305 gaagggcctgttcgtgaaggtcaacatggacggcgtccccatcgggcggaaggtggagct 364 ||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||| || || Sbjct: 61545 gaagggcatgttcgtgaagatcaacatggacggcgtcccgatcgggaggaaggtcgacct 61604 Query: 365 caagcagcacggcagctacgctgagctctcggccaccgtcgacaacctcttccgcagcct 424 | | | ||||| ||||||| ||||||| ||| |||||||||| ||||||||| |||| Sbjct: 61605 cgcggcgtacggcggctacgcccagctctccgccgccgtcgacaagctcttccgcggcct 61664 Query: 425 cctcgccg 432 ||| |||| Sbjct: 61665 cctagccg 61672 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 174 gtggggtggccgccggtgcgctcgttccggcggaacct 211 |||||||||||||||||||| ||||||||||||||||| Sbjct: 61411 gtggggtggccgccggtgcggtcgttccggcggaacct 61448 Score = 63.9 bits (32), Expect = 6e-07 Identities = 48/52 (92%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 470 cggcggcgagtacacgcttggtgtacgaggacgacgagggcgacaggatgct 521 |||||||||||||||||| | | ||||||||||||||||||||| ||||||| Sbjct: 61828 cggcggcgagtacacgctcg-tctacgaggacgacgagggcgaccggatgct 61878 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 545 atgttcatcgtcacggcgaagaggctgcgagggctcaagagctcc 589 |||||||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 61981 atgttcatcgccaccgcgaagaggctgcgcgtgctcaagagctcc 62025
>ref|XM_476071.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 732 Score = 99.6 bits (50), Expect = 1e-17 Identities = 110/130 (84%) Strand = Plus / Plus Query: 314 gttcgtgaaggtcaacatggacggcgtccccatcgggcggaaggtggagctcaagcagca 373 |||||| ||||| ||||||||||||||||| ||||| |||||||| || || | ||| Sbjct: 339 gttcgtcaaggtgaacatggacggcgtcccgatcggccggaaggtcgacctggcggcgca 398 Query: 374 cggcagctacgctgagctctcggccaccgtcgacaacctcttccgcagcctcctcgccgc 433 |||| |||||| |||||||| ||| |||||||| ||||||||| ||||||||||||| Sbjct: 399 cggcggctacggcgagctctccgccgccgtcgaccgtctcttccgcggcctcctcgccgc 458 Query: 434 tcaaagggac 443 |||||||||| Sbjct: 459 tcaaagggac 468 Score = 75.8 bits (38), Expect = 1e-10 Identities = 100/118 (84%), Gaps = 2/118 (1%) Strand = Plus / Plus Query: 472 gcggcgagtacacgcttggtgtacgaggacgacgagggcgacaggatgctggttggggga 531 |||||||||||||||| | | ||||||||||||||||||||| |||||| || || | | Sbjct: 560 gcggcgagtacacgctcg-tctacgaggacgacgagggcgaccagatgctcgtcggcg-a 617 Query: 532 tgtcccatggcacatgttcatcgtcacggcgaagaggctgcgagggctcaagagctcc 589 || |||||| |||||||||||| | |||||| ||||||||| | ||||| ||||||| Sbjct: 618 cgtgccatggaacatgttcatcgccgcggcgaggaggctgcgcgtgctcaggagctcc 675 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 177 gggtggccgccggtgcgctcgttccggcggaacct 211 ||||||||||||||||| ||||||||||||||||| Sbjct: 223 gggtggccgccggtgcggtcgttccggcggaacct 257
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 4e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 314 gttcgtgaaggtcaacatggacggcgtccccatcgggcggaaggtggagctcaagcagca 373 |||||| ||||| ||||||||||||||||| ||||| |||||||| || || | ||| Sbjct: 5274184 gttcgtcaaggtgaacatggacggcgtcccgatcggccggaaggtcgacctggcggcgca 5274243 Query: 374 cggcagctacgctgagctctcggccaccgtcgacaacctcttccgcagcctcctcgccg 432 |||| |||||| |||||||| ||| |||||||| ||||||||| |||||||||||| Sbjct: 5274244 cggcggctacggcgagctctccgccgccgtcgaccgtctcttccgcggcctcctcgccg 5274302 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 177 gggtggccgccggtgcgctcgttccggcggaacct 211 ||||||||||||||||| ||||||||||||||||| Sbjct: 5274068 gggtggccgccggtgcggtcgttccggcggaacct 5274102 Score = 52.0 bits (26), Expect = 0.002 Identities = 39/42 (92%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 472 gcggcgagtacacgcttggtgtacgaggacgacgagggcgac 513 |||||||||||||||| | | ||||||||||||||||||||| Sbjct: 5274501 gcggcgagtacacgctcg-tctacgaggacgacgagggcgac 5274541 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 177 gggtggccgccggtgcgctcgttccgg 203 |||||||||||||||||| |||||||| Sbjct: 4624979 gggtggccgccggtgcgcgcgttccgg 4624953 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 544 catgttcatcgtcacggcgaagaggctgcgagggctcaagagctcc 589 ||||||||||| | |||||| ||||||||| | ||||| ||||||| Sbjct: 5274654 catgttcatcgccgcggcgaggaggctgcgcgtgctcaggagctcc 5274699
>dbj|AK111403.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E05, full insert sequence Length = 1493 Score = 77.8 bits (39), Expect = 4e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 314 gttcgtgaaggtcaacatggacggcgtccccatcgggcggaaggtggagctcaagcagca 373 |||||| ||||| ||||||||||||||||| ||||| |||||||| || || | ||| Sbjct: 582 gttcgtcaaggtgaacatggacggcgtcccgatcggccggaaggtcgacctggcggcgca 641 Query: 374 cggcagctacgctgagctctcggccaccgtcgacaacctcttccgcagcctcctcgccg 432 |||| |||||| |||||||| ||| |||||||| ||||||||| |||||||||||| Sbjct: 642 cggcggctacggcgagctctccgccgccgtcgaccgtctcttccgcggcctcctcgccg 700 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 177 gggtggccgccggtgcgctcgttccggcggaacct 211 ||||||||||||||||| ||||||||||||||||| Sbjct: 466 gggtggccgccggtgcggtcgttccggcggaacct 500 Score = 52.0 bits (26), Expect = 0.002 Identities = 39/42 (92%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 472 gcggcgagtacacgcttggtgtacgaggacgacgagggcgac 513 |||||||||||||||| | | ||||||||||||||||||||| Sbjct: 899 gcggcgagtacacgctcg-tctacgaggacgacgagggcgac 939 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 544 catgttcatcgtcacggcgaagaggctgcgagggctcaagagctcc 589 ||||||||||| | |||||| ||||||||| | ||||| ||||||| Sbjct: 1052 catgttcatcgccgcggcgaggaggctgcgcgtgctcaggagctcc 1097
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12, complete sequence Length = 88725 Score = 77.8 bits (39), Expect = 4e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 314 gttcgtgaaggtcaacatggacggcgtccccatcgggcggaaggtggagctcaagcagca 373 |||||| ||||| ||||||||||||||||| ||||| |||||||| || || | ||| Sbjct: 10885 gttcgtcaaggtgaacatggacggcgtcccgatcggccggaaggtcgacctggcggcgca 10944 Query: 374 cggcagctacgctgagctctcggccaccgtcgacaacctcttccgcagcctcctcgccg 432 |||| |||||| |||||||| ||| |||||||| ||||||||| |||||||||||| Sbjct: 10945 cggcggctacggcgagctctccgccgccgtcgaccgtctcttccgcggcctcctcgccg 11003 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 177 gggtggccgccggtgcgctcgttccggcggaacct 211 ||||||||||||||||| ||||||||||||||||| Sbjct: 10769 gggtggccgccggtgcggtcgttccggcggaacct 10803 Score = 52.0 bits (26), Expect = 0.002 Identities = 39/42 (92%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 472 gcggcgagtacacgcttggtgtacgaggacgacgagggcgac 513 |||||||||||||||| | | ||||||||||||||||||||| Sbjct: 11202 gcggcgagtacacgctcg-tctacgaggacgacgagggcgac 11242 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Plus Query: 544 catgttcatcgtcacggcgaagaggctgcgagggctcaagagctcc 589 ||||||||||| | |||||| ||||||||| | ||||| ||||||| Sbjct: 11355 catgttcatcgccgcggcgaggaggctgcgcgtgctcaggagctcc 11400
>ref|NM_188458.1| Oryza sativa (japonica cultivar-group), Ozsa8153 predicted mRNA Length = 966 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 174 gtggggtggccgccggtgcgctcgttccggcgga 207 |||||||||||||||||||| ||||||||||||| Sbjct: 520 gtggggtggccgccggtgcggtcgttccggcgga 553
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 174 gtggggtggccgccggtgcgctcgttccggcgga 207 |||||||||||||||||||| ||||||||||||| Sbjct: 140185 gtggggtggccgccggtgcggtcgttccggcgga 140218
>ref|XM_467542.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1006 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 312 ctgttcgtgaaggtcaacatggacggcgtccccatcgg 349 |||||||||||||| ||||||| |||||||||||||| Sbjct: 411 ctgttcgtgaaggtgtacatggagggcgtccccatcgg 448
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 312 ctgttcgtgaaggtcaacatggacggcgtccccatcgg 349 |||||||||||||| ||||||| |||||||||||||| Sbjct: 30083768 ctgttcgtgaaggtgtacatggagggcgtccccatcgg 30083805
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 312 ctgttcgtgaaggtcaacatggacggcgtccccatcgg 349 |||||||||||||| ||||||| |||||||||||||| Sbjct: 63365 ctgttcgtgaaggtgtacatggagggcgtccccatcgg 63402
>dbj|AK066518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070M23, full insert sequence Length = 1006 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 312 ctgttcgtgaaggtcaacatggacggcgtccccatcgg 349 |||||||||||||| ||||||| |||||||||||||| Sbjct: 411 ctgttcgtgaaggtgtacatggagggcgtccccatcgg 448
>ref|NM_183562.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 570 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 312 ctgttcgtgaaggtcaacatggacggcgtccccatcgggcggaag 356 |||||||||||||| ||||||| |||||||| ||||| |||||| Sbjct: 325 ctgttcgtgaaggtgtacatggagggcgtcccgatcggccggaag 369
>emb|AJ627255.1| Oryza sativa (indica cultivar-group) partial mRNA for putative IAA20 transcriptional repressor (putative IAA20 gene) Length = 561 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 312 ctgttcgtgaaggtcaacatggacggcgtccccatcgggcggaag 356 |||||||||||||| ||||||| |||||||| ||||| |||||| Sbjct: 282 ctgttcgtgaaggtgtacatggagggcgtcccgatcggccggaag 326
>dbj|AP002070.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0511C01 Length = 170402 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 312 ctgttcgtgaaggtcaacatggacggcgtccccatcgggcggaag 356 |||||||||||||| ||||||| |||||||| ||||| |||||| Sbjct: 18540 ctgttcgtgaaggtgtacatggagggcgtcccgatcggccggaag 18584
>dbj|AK103865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149F09, full insert sequence Length = 860 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 312 ctgttcgtgaaggtcaacatggacggcgtccccatcgggcggaag 356 |||||||||||||| ||||||| |||||||| ||||| |||||| Sbjct: 268 ctgttcgtgaaggtgtacatggagggcgtcccgatcggccggaag 312
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 177 gggtggccgccggtgcgctcgttccgg 203 |||||||||||||||||| |||||||| Sbjct: 135446 gggtggccgccggtgcgcgcgttccgg 135420
>dbj|AK100080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001M24, full insert sequence Length = 1204 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 177 gggtggccgccggtgcgctcgttccgg 203 |||||||||||||||||| |||||||| Sbjct: 376 gggtggccgccggtgcgcgcgttccgg 402
>dbj|AK061796.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G05, full insert sequence Length = 1201 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 177 gggtggccgccggtgcgctcgttccgg 203 |||||||||||||||||| |||||||| Sbjct: 373 gggtggccgccggtgcgcgcgttccgg 399
>ref|XM_523827.1| PREDICTED: Pan troglodytes LOC468438 (LOC468438), mRNA Length = 2913 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 ccggcaccaccaccagcaggagcag 66 ||||||||||||||||||| ||||| Sbjct: 1232 ccggcaccaccaccagcagcagcag 1256
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 455 ccccgacgcgatcgccggcggcgag 479 ||||||||||||||| ||||||||| Sbjct: 1989578 ccccgacgcgatcgcgggcggcgag 1989554
>gb|AY622359.1| Oryza sativa clone RI-150 EST-SRR marker sequence Length = 180 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ttcgtgaaggtcaacatggacggcg 339 ||||||||||||| ||||||||||| Sbjct: 90 ttcgtgaaggtcagcatggacggcg 114
>gb|AY438537.1| Aedes polynesiensis microsatellite Ap6 sequence Length = 282 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 ccggcaccaccaccagcaggagcag 66 ||||||||||||||||||| ||||| Sbjct: 172 ccggcaccaccaccagcagcagcag 196
>gb|AC126026.4| Mus musculus BAC clone RP24-486A17 from chromosome 18, complete sequence Length = 138242 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 accaccaccagcaggagcagg 67 ||||||||||||||||||||| Sbjct: 116029 accaccaccagcaggagcagg 116049
>ref|XM_540472.2| PREDICTED: Canis familiaris similar to caspase recruitment domain protein 14 isoform 1 (LOC483353), mRNA Length = 3018 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 310 gcctgttcgtgaaggtcaacatgga 334 |||||| |||||||||||||||||| Sbjct: 1949 gcctgtccgtgaaggtcaacatgga 1973
>gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, complete sequence Length = 232817 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 accaccaccagcaggagcagg 67 ||||||||||||||||||||| Sbjct: 211377 accaccaccagcaggagcagg 211357
>ref|XM_546599.2| PREDICTED: Canis familiaris similar to jumonji domain containing 3 (LOC489481), mRNA Length = 5371 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 ccggcaccaccaccagcaggagcag 66 ||||||||||||||||||| ||||| Sbjct: 1427 ccggcaccaccaccagcagcagcag 1451
>ref|XM_541216.2| PREDICTED: Canis familiaris similar to Discoidin, CUB and LCCL domain containing protein 1 precursor (LOC484099), mRNA Length = 2274 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 ccatcgggcggaaggtggagc 363 ||||||||||||||||||||| Sbjct: 1759 ccatcgggcggaaggtggagc 1739
>gb|AC107781.9| Mus musculus, clone RP23-56O1, complete sequence Length = 174437 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 accaccagcaggagcaggtac 70 ||||||||||||||||||||| Sbjct: 129593 accaccagcaggagcaggtac 129613
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 cgacgcgatcgccggcggcga 478 ||||||||||||||||||||| Sbjct: 1024169 cgacgcgatcgccggcggcga 1024189
>gb|AC104581.22| Homo sapiens chromosome 17, clone RP11-1099M24, complete sequence Length = 187718 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 ccggcaccaccaccagcaggagcag 66 ||||||||||||||||||| ||||| Sbjct: 10613 ccggcaccaccaccagcagcagcag 10637
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 186 ccggtgcgctcgttccggcggaacctggccgcc 218 ||||| ||| || |||||||||||||||||||| Sbjct: 1937714 ccggtccgcacgatccggcggaacctggccgcc 1937746
>ref|XM_941783.1| PREDICTED: Homo sapiens jumonji domain containing 3, transcript variant 3 (JMJD3), mRNA Length = 6701 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 ccggcaccaccaccagcaggagcag 66 ||||||||||||||||||| ||||| Sbjct: 1557 ccggcaccaccaccagcagcagcag 1581
>ref|XM_043272.10| PREDICTED: Homo sapiens jumonji domain containing 3, transcript variant 1 (JMJD3), mRNA Length = 6694 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 ccggcaccaccaccagcaggagcag 66 ||||||||||||||||||| ||||| Sbjct: 1551 ccggcaccaccaccagcagcagcag 1575
>gb|AE004700.1| Pseudomonas aeruginosa PAO1, section 261 of 529 of the complete genome Length = 16118 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 453 gcccccgacgcgatcgccggcggcg 477 |||||||| |||||||||||||||| Sbjct: 8676 gcccccgaggcgatcgccggcggcg 8700
>gb|AY108249.1| Zea mays PCO075979 mRNA sequence Length = 1260 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 317 cgtgaaggtcaacatggacggcgtccccatcgggcggaaggtgga 361 ||||||||| || |||| || || |||||||||||||||||||| Sbjct: 509 cgtgaaggtgaagctggaaggggtgcccatcgggcggaaggtgga 553
>emb|AJ893519.1| Spalax ehrenbergi partial ar gene for androgen receptor, exon 1 Length = 1416 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 45 gcaccaccaccagcaggagcaggta 69 |||||||||||||||| |||||||| Sbjct: 483 gcaccaccaccagcagcagcaggta 507
>dbj|AB002344.2| Human mRNA for KIAA0346 gene, partial cds Length = 6698 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 ccggcaccaccaccagcaggagcag 66 ||||||||||||||||||| ||||| Sbjct: 1562 ccggcaccaccaccagcagcagcag 1586
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 caccaccaccagcaggagca 65 |||||||||||||||||||| Sbjct: 121687 caccaccaccagcaggagca 121706
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 accaagccggcaccaccaccagca 59 |||||||| ||||||||||||||| Sbjct: 941077 accaagccagcaccaccaccagca 941100
>ref|XM_483207.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1078 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tcgccggcggcgagtacacg 485 |||||||||||||||||||| Sbjct: 508 tcgccggcggcgagtacacg 527
>ref|NM_192712.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1443 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cgtcgtcgtccaaggaggac 245 |||||||||||||||||||| Sbjct: 995 cgtcgtcgtccaaggaggac 1014
>ref|XM_369398.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG06066.4) partial mRNA Length = 3126 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 gcctggagctcagcctcggcctgc 24 |||| ||||||||||||||||||| Sbjct: 962 gccttgagctcagcctcggcctgc 939
>ref|XM_957347.1| Neurospora crassa OR74A hypothetical protein (NCU07924.1) partial mRNA Length = 4308 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 caccaccaccagcaggagca 65 |||||||||||||||||||| Sbjct: 2902 caccaccaccagcaggagca 2883
>ref|XM_328629.1| Neurospora crassa OR74A hypothetical protein (NCU07924.1) partial mRNA Length = 4308 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 caccaccaccagcaggagca 65 |||||||||||||||||||| Sbjct: 2902 caccaccaccagcaggagca 2883
>gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome 13, complete sequence Length = 214085 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gtgaaggtcaacatggacgg 337 |||||||||||||||||||| Sbjct: 193519 gtgaaggtcaacatggacgg 193538
>ref|XM_543405.2| PREDICTED: Canis familiaris similar to DEAD-box protein 54 (ATP-dependent RNA helicase DP97), transcript variant 1 (LOC486279), mRNA Length = 2675 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 ggacgacgagggcgacagga 517 |||||||||||||||||||| Sbjct: 1854 ggacgacgagggcgacagga 1873
>ref|XM_845683.1| PREDICTED: Canis familiaris similar to DEAD-box protein 54 (ATP-dependent RNA helicase DP97), transcript variant 3 (LOC486279), mRNA Length = 2690 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 ggacgacgagggcgacagga 517 |||||||||||||||||||| Sbjct: 1869 ggacgacgagggcgacagga 1888
>ref|XM_386110.1| Gibberella zeae PH-1 chromosome 3 predicted protein (FG05934.1) partial mRNA Length = 636 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gacaacgacgtcgccgtcag 280 |||||||||||||||||||| Sbjct: 529 gacaacgacgtcgccgtcag 548
>ref|XM_382892.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02716.1) partial mRNA Length = 3408 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 acctcttccgcagcctcctcgccg 432 ||||| |||||||||||||||||| Sbjct: 1382 acctcatccgcagcctcctcgccg 1405
>emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete genome; segment 3/10 Length = 312050 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 461 cgcgatcgccggcggcgagtacac 484 |||||||||||||||| ||||||| Sbjct: 165090 cgcgatcgccggcggcaagtacac 165113
>emb|BX005080.7| Mouse DNA sequence from clone RP23-333M14 on chromosome 11, complete sequence Length = 129196 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 caccaccaccagcaggagca 65 |||||||||||||||||||| Sbjct: 53803 caccaccaccagcaggagca 53784
>gb|AC163343.2| Mus musculus BAC clone RP23-472D11 from chromosome 13, complete sequence Length = 164331 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gtgaaggtcaacatggacgg 337 |||||||||||||||||||| Sbjct: 64957 gtgaaggtcaacatggacgg 64938
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 cagcctcctcgccgctcaaa 438 |||||||||||||||||||| Sbjct: 3852679 cagcctcctcgccgctcaaa 3852698
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 490 gtgtacgaggacgacgagggcgacaggatgct 521 ||||||||||||| ||| |||||| ||||||| Sbjct: 20341197 gtgtacgaggacggcgacggcgactggatgct 20341166
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 tcgccggcggcgagtacacg 485 |||||||||||||||||||| Sbjct: 24811709 tcgccggcggcgagtacacg 24811690
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 tcgacaacctcttccgcagc 422 |||||||||||||||||||| Sbjct: 4754494 tcgacaacctcttccgcagc 4754475
>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1345_D02 Length = 159613 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 tcgccggcggcgagtacacg 485 |||||||||||||||||||| Sbjct: 112510 tcgccggcggcgagtacacg 112491
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgtcgtcgtccaaggaggac 245 |||||||||||||||||||| Sbjct: 123308 cgtcgtcgtccaaggaggac 123289
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgtcgtcgtccaaggaggac 245 |||||||||||||||||||| Sbjct: 91426 cgtcgtcgtccaaggaggac 91407
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 490 gtgtacgaggacgacgagggcgacaggatgct 521 ||||||||||||| ||| |||||| ||||||| Sbjct: 120324 gtgtacgaggacggcgacggcgactggatgct 120293
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 tcgccggcggcgagtacacg 485 |||||||||||||||||||| Sbjct: 16155 tcgccggcggcgagtacacg 16136
>emb|X52610.1|HSPGRB1 Halobacterium sp. DNA for high copy number plasmid pGRB1 Length = 1781 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 gaggacgacgagggcgacag 515 |||||||||||||||||||| Sbjct: 1520 gaggacgacgagggcgacag 1539
>emb|X66324.1|HSPPLAS Halobacterium sp. plasmid DNA Length = 1781 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 gaggacgacgagggcgacag 515 |||||||||||||||||||| Sbjct: 1520 gaggacgacgagggcgacag 1539
>dbj|AK111128.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C09, full insert sequence Length = 956 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 490 gtgtacgaggacgacgagggcgacaggatgct 521 ||||||||||||| ||| |||||| ||||||| Sbjct: 357 gtgtacgaggacggcgacggcgactggatgct 388
>ref|XM_308922.2| Anopheles gambiae str. PEST ENSANGP00000012810 (ENSANGG00000010321), partial mRNA Length = 2103 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 caccaccaccagcaggagca 65 |||||||||||||||||||| Sbjct: 1831 caccaccaccagcaggagca 1812
>dbj|AK106964.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F09, full insert sequence Length = 1077 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tcgccggcggcgagtacacg 485 |||||||||||||||||||| Sbjct: 508 tcgccggcggcgagtacacg 527
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cttctgctcgccaacctgaa 128 |||||||||||||||||||| Sbjct: 2122806 cttctgctcgccaacctgaa 2122825
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 ggtggagctcaagcagcacg 375 |||||||||||||||||||| Sbjct: 3581605 ggtggagctcaagcagcacg 3581624
>gb|U00022.1|U00022 Mycobacterium leprae cosmid L308 Length = 36411 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 461 cgcgatcgccggcggcgagtacac 484 |||||||||||||||| ||||||| Sbjct: 1318 cgcgatcgccggcggcaagtacac 1295 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,436,810 Number of Sequences: 3902068 Number of extensions: 4436810 Number of successful extensions: 105001 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103732 Number of HSP's gapped (non-prelim): 1258 length of query: 589 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 566 effective length of database: 17,143,297,704 effective search space: 9703106500464 effective search space used: 9703106500464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
