| Clone Name | basd14l10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT019230.1| Zea mays clone Contig903.F mRNA sequence Length = 727 Score = 125 bits (63), Expect = 2e-25 Identities = 167/202 (82%) Strand = Plus / Plus Query: 330 tggaggtccttcatgaagcttgttctcagacattctcgttggagaagaagtgtgttgagt 389 ||||| |||||||||| ||||| || || ||||||| || || |||||||||| ||| Sbjct: 364 tggagttccttcatgatgcttgctcccaatcattctcctttgaacagaagtgtgtcgagc 423 Query: 390 tggtggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagt 449 || ||||||| ||||| |||||| | |||||||||||| ||||||||| || |||| || Sbjct: 424 tgatggactcttatgcgactctcctgtttgccaagatcacggagatcagaccggaagcgt 483 Query: 450 tctgcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagngaga 509 |||||||||| ||||||| |||||||||| |||||||| || |||||| |||| || | Sbjct: 484 tctgcaaacggtatggcctgtgcagggacacggctcttctctccggtgtgggaagtgaca 543 Query: 510 gcacatgcgtgttttgccacca 531 |||| || ||||| |||||||| Sbjct: 544 gcacgtgtgtgttctgccacca 565
>gb|AY103886.1| Zea mays PCO129988 mRNA sequence Length = 2158 Score = 125 bits (63), Expect = 2e-25 Identities = 167/202 (82%) Strand = Plus / Plus Query: 330 tggaggtccttcatgaagcttgttctcagacattctcgttggagaagaagtgtgttgagt 389 ||||| |||||||||| ||||| || || ||||||| || || |||||||||| ||| Sbjct: 640 tggagttccttcatgatgcttgctcccaatcattctcctttgaacagaagtgtgtcgagc 699 Query: 390 tggtggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagt 449 || ||||||| ||||| |||||| | |||||||||||| ||||||||| || |||| || Sbjct: 700 tgatggactcttatgcgactctcctgtttgccaagatcacggagatcagaccggaagcgt 759 Query: 450 tctgcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagngaga 509 |||||||||| ||||||| |||||||||| |||||||| || |||||| |||| || | Sbjct: 760 tctgcaaacggtatggcctgtgcagggacacggctcttctctccggtgtgggaagtgaca 819 Query: 510 gcacatgcgtgttttgccacca 531 |||| || ||||| |||||||| Sbjct: 820 gcacgtgtgtgttctgccacca 841
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 105 bits (53), Expect = 1e-19 Identities = 127/152 (83%) Strand = Plus / Plus Query: 393 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 452 |||||||||||||||||||| | ||||| || || || ||||| |||||||| ||||||| Sbjct: 629142 tggactcctatgcaactctcgtctttgcaaaaattgctgagattaagccagatgagttct 629201 Query: 453 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagngagagca 512 |||||| |||||||||||||||||| |||||| | || | | ||| ||| || |||| Sbjct: 629202 gcaaacagtatggcctctgcagggacatggctcttttatcagctatgaaaagtgaaagca 629261 Query: 513 catgcgtgttttgccaccacctcatggatgaa 544 ||||||| || ||||||||| |||| |||||| Sbjct: 629262 catgcgtattctgccaccacatcatcgatgaa 629293 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 336 tccttcatgaagcttgttctcagacattctc 366 |||||||||| ||||||||||||||||||| Sbjct: 628901 tccttcatgacacttgttctcagacattctc 628931
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 105 bits (53), Expect = 1e-19 Identities = 127/152 (83%) Strand = Plus / Plus Query: 393 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 452 |||||||||||||||||||| | ||||| || || || ||||| |||||||| ||||||| Sbjct: 629142 tggactcctatgcaactctcgtctttgcaaaaattgctgagattaagccagatgagttct 629201 Query: 453 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagngagagca 512 |||||| |||||||||||||||||| |||||| | || | | ||| ||| || |||| Sbjct: 629202 gcaaacagtatggcctctgcagggacatggctcttttatcagctatgaaaagtgaaagca 629261 Query: 513 catgcgtgttttgccaccacctcatggatgaa 544 ||||||| || ||||||||| |||| |||||| Sbjct: 629262 catgcgtattctgccaccacatcatcgatgaa 629293 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 336 tccttcatgaagcttgttctcagacattctc 366 |||||||||| ||||||||||||||||||| Sbjct: 628901 tccttcatgacacttgttctcagacattctc 628931
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 105 bits (53), Expect = 1e-19 Identities = 127/152 (83%) Strand = Plus / Minus Query: 393 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 452 |||||||||||||||||||| | ||||| || || || ||||| |||||||| ||||||| Sbjct: 19701 tggactcctatgcaactctcgtctttgcaaaaattgctgagattaagccagatgagttct 19642 Query: 453 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagngagagca 512 |||||| |||||||||||||||||| |||||| | || | | ||| ||| || |||| Sbjct: 19641 gcaaacagtatggcctctgcagggacatggctcttttatcagctatgaaaagtgaaagca 19582 Query: 513 catgcgtgttttgccaccacctcatggatgaa 544 ||||||| || ||||||||| |||| |||||| Sbjct: 19581 catgcgtattctgccaccacatcatcgatgaa 19550 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 336 tccttcatgaagcttgttctcagacattctc 366 |||||||||| ||||||||||||||||||| Sbjct: 19942 tccttcatgacacttgttctcagacattctc 19912
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 81.8 bits (41), Expect = 2e-12 Identities = 124/152 (81%) Strand = Plus / Plus Query: 393 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 452 ||||||||||||||||||| | ||||| || || || ||||||||||||| | ||||| Sbjct: 592853 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccagctgcgttct 592912 Query: 453 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagngagagca 512 |||||| |||||||||||||||||| |||||| | || | ||| | ||| || |||| Sbjct: 592913 gcaaacagtatggcctctgcagggacatggctcttttatcagctgttaaaagtgaaagca 592972 Query: 513 catgcgtgttttgccaccacctcatggatgaa 544 ||||| | || ||||||||| |||| |||||| Sbjct: 592973 catgcttattctgccaccacatcatcgatgaa 593004 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 336 tccttcatgaagcttgttctcagacattctc 366 |||||||||| ||||||||||||||||||| Sbjct: 592605 tccttcatgacacttgttctcagacattctc 592635 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tgagaagtttacaaatgaag 287 |||||||||||||||||||| Sbjct: 8779254 tgagaagtttacaaatgaag 8779273
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 81.8 bits (41), Expect = 2e-12 Identities = 124/152 (81%) Strand = Plus / Plus Query: 393 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 452 ||||||||||||||||||| | ||||| || || || ||||||||||||| | ||||| Sbjct: 592853 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccagctgcgttct 592912 Query: 453 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagngagagca 512 |||||| |||||||||||||||||| |||||| | || | ||| | ||| || |||| Sbjct: 592913 gcaaacagtatggcctctgcagggacatggctcttttatcagctgttaaaagtgaaagca 592972 Query: 513 catgcgtgttttgccaccacctcatggatgaa 544 ||||| | || ||||||||| |||| |||||| Sbjct: 592973 catgcttattctgccaccacatcatcgatgaa 593004 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 336 tccttcatgaagcttgttctcagacattctc 366 |||||||||| ||||||||||||||||||| Sbjct: 592605 tccttcatgacacttgttctcagacattctc 592635 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tgagaagtttacaaatgaag 287 |||||||||||||||||||| Sbjct: 8850017 tgagaagtttacaaatgaag 8850036
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 81.8 bits (41), Expect = 2e-12 Identities = 124/152 (81%) Strand = Plus / Minus Query: 393 tggactcctatgcaactctcttatttgccaagatcgcggagatcaagccagaagagttct 452 ||||||||||||||||||| | ||||| || || || ||||||||||||| | ||||| Sbjct: 150119 tggactcctatgcaactcttgtctttgcaaaaattgctgagatcaagccagctgcgttct 150060 Query: 453 gcaaacgaaatggcctctgcagggacaatgctcttctgtctggtgtgagaagngagagca 512 |||||| |||||||||||||||||| |||||| | || | ||| | ||| || |||| Sbjct: 150059 gcaaacagtatggcctctgcagggacatggctcttttatcagctgttaaaagtgaaagca 150000 Query: 513 catgcgtgttttgccaccacctcatggatgaa 544 ||||| | || ||||||||| |||| |||||| Sbjct: 149999 catgcttattctgccaccacatcatcgatgaa 149968 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 336 tccttcatgaagcttgttctcagacattctc 366 |||||||||| ||||||||||||||||||| Sbjct: 150367 tccttcatgacacttgttctcagacattctc 150337
>dbj|AK120247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044M10, full insert sequence Length = 1025 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 336 tccttcatgaagcttgttctcagacattctcgttggagaagaagtgtgttgagttggtgg 395 |||||||||| ||||||||||||||||||| || ||| | |||||| ||||| ||| Sbjct: 544 tccttcatgacacttgttctcagacattctcctttgagcaaaagtgtcttgagactatgg 603 Query: 396 actcctatgcaactctcttatttgccaagatcgcggagatcaagccag 443 |||||||||||||||| | ||||| || || || ||||||||||||| Sbjct: 604 actcctatgcaactcttgtctttgcaaaaattgctgagatcaagccag 651
>ref|XM_584248.2| PREDICTED: Bos taurus similar to Kinesin-like protein KIF1B (Klp) (LOC507604), partial mRNA Length = 5037 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 104 ctcctcttgctgctcgtcagcc 125 |||||||||||||||||||||| Sbjct: 1832 ctcctcttgctgctcgtcagcc 1811
>gb|AC009411.2| Homo sapiens BAC clone RP11-342D1 from 2, complete sequence Length = 170804 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 251 ccactatgcccagcttgtgaga 272 |||||||||||||||||||||| Sbjct: 20430 ccactatgcccagcttgtgaga 20451
>gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, complete sequence Length = 246249 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 cacaagataaaatgatggagg 335 ||||||||||||||||||||| Sbjct: 167464 cacaagataaaatgatggagg 167484 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 90018 ccttctgtctactcctcttg 90037
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 419 gccaagatcgcggagatcaag 439 ||||||||||||||||||||| Sbjct: 436707 gccaagatcgcggagatcaag 436727
>gb|AC079446.30| Mus musculus strain C57BL/6J chromosome X clone rp23-9p22, complete sequence Length = 223309 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cccttctgtctactcctcttg 112 ||||||||||||||||||||| Sbjct: 62184 cccttctgtctactcctcttg 62204
>gb|U51562.1|PSU51562 Prunus serotina (R)-(+)-mandelonitrile lyase isoform MDL3 precursor (MDL3) gene, complete cds Length = 4748 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 caatcacaagataaaatgatg 331 ||||||||||||||||||||| Sbjct: 2179 caatcacaagataaaatgatg 2159
>emb|AL671922.16| Mouse DNA sequence from clone RP23-295K1 on chromosome X, complete sequence Length = 144463 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cccttctgtctactcctcttg 112 ||||||||||||||||||||| Sbjct: 78525 cccttctgtctactcctcttg 78545
>gb|AC101978.6| Mus musculus chromosome 3, clone RP24-335I21, complete sequence Length = 185025 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 78997 ccttctgtctactcctcttg 78978
>gb|AC163390.2| Mus musculus chromosome 1, clone RP24-300C19, complete sequence Length = 180465 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 165154 ccttctgtctactcctcttg 165173
>gb|AC145810.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0059C14, complete sequence Length = 142138 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tgagaagtttacaaatgaag 287 |||||||||||||||||||| Sbjct: 78025 tgagaagtttacaaatgaag 78044
>gb|AC167171.2| Mus musculus BAC clone RP23-409H8 from chromosome 13, complete sequence Length = 203840 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 167297 ccttctgtctactcctcttg 167316
>gb|AC110734.9| Mus musculus chromosome 1, clone RP24-113C15, complete sequence Length = 134073 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 109688 ccttctgtctactcctcttg 109707
>gb|AC110908.13| Mus musculus chromosome 7, clone RP24-181E10, complete sequence Length = 173230 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 96682 ccttctgtctactcctcttg 96701 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 92236 ccttctgtctactcctcttg 92255
>gb|AC161409.11| Mus musculus chromosome 7, clone RP23-292B24, complete sequence Length = 185365 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 123158 ccttctgtctactcctcttg 123139 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 78798 ccttctgtctactcctcttg 78779 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 25318 ccttctgtctactcctcttg 25299
>ref|XM_417075.1| PREDICTED: Gallus gallus similar to MGC75495 protein (LOC418881), mRNA Length = 4119 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 gaagcttgttctcagacatt 363 |||||||||||||||||||| Sbjct: 2418 gaagcttgttctcagacatt 2437
>gb|AC146424.3| Pan troglodytes BAC clone RP43-26H22 from 7, complete sequence Length = 195194 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ttgcccttctgtctactcct 108 |||||||||||||||||||| Sbjct: 75114 ttgcccttctgtctactcct 75095
>gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosome 19, complete sequence Length = 224526 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 141773 ccttctgtctactcctcttg 141792
>gb|AC127303.3| Mus musculus BAC clone RP23-280E20 from chromosome X, complete sequence Length = 212318 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 101253 ccttctgtctactcctcttg 101234
>gb|AC157900.3| Mus musculus chromosome 18, clone RP23-10A11, complete sequence Length = 200258 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 56043 ccttctgtctactcctcttg 56062
>gb|BC067327.1| Xenopus tropicalis nucleoporin 93kDa, mRNA (cDNA clone MGC:76268 IMAGE:5379233), complete cds Length = 2592 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ggacaatgctcttctgtctg 494 |||||||||||||||||||| Sbjct: 339 ggacaatgctcttctgtctg 358
>gb|AC139054.17| Mus musculus chromosome 15, clone RP23-14D20, complete sequence Length = 207292 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 48185 ccttctgtctactcctcttg 48204
>gb|BC045089.1| Xenopus laevis dead eye-like, mRNA (cDNA clone MGC:53870 IMAGE:5543002), complete cds Length = 2639 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ggacaatgctcttctgtctg 494 |||||||||||||||||||| Sbjct: 384 ggacaatgctcttctgtctg 403
>emb|CT009736.8| Mouse DNA sequence from clone RP23-99F22 on chromosome 17, complete sequence Length = 210326 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 60487 ccttctgtctactcctcttg 60506
>emb|CT009734.9| Mouse DNA sequence from clone RP23-182E3 on chromosome 14, complete sequence Length = 202398 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 193464 ccttctgtctactcctcttg 193445
>gb|AC110563.4| Mus musculus chromosome 3, clone RP23-287O4, complete sequence Length = 237878 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 32335 ccttctgtctactcctcttg 32316
>gb|AC121956.3| Mus musculus BAC clone RP24-225I19 from chromosome 7, complete sequence Length = 191330 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ccactatgcccagcttgtgagaag 274 |||||||||||||||| ||||||| Sbjct: 165525 ccactatgcccagcttttgagaag 165502
>gb|AC125517.4| Mus musculus BAC clone RP24-261P6 from chromosome 3, complete sequence Length = 193517 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 8959 ccttctgtctactcctcttg 8940
>gb|AC117235.3| Mus musculus BAC clone RP23-415F18 from 17, complete sequence Length = 207331 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 32836 ccttctgtctactcctcttg 32817
>gb|AC123829.2| Mus musculus BAC clone RP24-117E16 from 2, complete sequence Length = 172335 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 157017 ccttctgtctactcctcttg 156998
>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence Length = 188867 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 70537 ccttctgtctactcctcttg 70556
>gb|AC117255.3| Mus musculus BAC clone RP24-481E4 from 3, complete sequence Length = 209706 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 40259 ccttctgtctactcctcttg 40278
>gb|AC098714.2| Mus musculus BAC clone RP23-2C22 from 7, complete sequence Length = 201178 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 83849 ccttctgtctactcctcttg 83830
>gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, complete sequence Length = 230585 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 74276 ccttctgtctactcctcttg 74295
>gb|AC154334.2| Mus musculus BAC clone RP24-497L7 from chromosome 14, complete sequence Length = 127819 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 44627 ccttctgtctactcctcttg 44646
>gb|AC145771.1| Pan troglodytes BAC clone RP43-14A5 from 7, complete sequence Length = 155040 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ttgcccttctgtctactcct 108 |||||||||||||||||||| Sbjct: 154842 ttgcccttctgtctactcct 154823
>gb|AC114407.24| Mus musculus chromosome 10, clone RP23-51G1, complete sequence Length = 143388 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 107999 ccttctgtctactcctcttg 107980
>gb|AC161037.3| Mus musculus chromosome 7, clone RP24-255H18, complete sequence Length = 184362 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 167496 ccttctgtctactcctcttg 167515
>gb|AC138364.8| Mus musculus chromosome 7, clone RP23-243D10, complete sequence Length = 199717 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ccactatgcccagcttgtgagaag 274 |||||||||||||||| ||||||| Sbjct: 42621 ccactatgcccagcttttgagaag 42598
>gb|AC157795.4| Mus musculus chromosome 1, clone RP24-122B24, complete sequence Length = 158636 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 132911 ccttctgtctactcctcttg 132892
>ref|NM_213714.1| Xenopus tropicalis nucleoporin 93kDa (nup93), mRNA Length = 2592 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ggacaatgctcttctgtctg 494 |||||||||||||||||||| Sbjct: 339 ggacaatgctcttctgtctg 358
>gb|AC162880.4| Mus musculus chromosome 1, clone RP24-275N11, complete sequence Length = 164201 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 63025 ccttctgtctactcctcttg 63006
>gb|AC154634.2| Mus musculus BAC clone RP23-298D14 from chromosome 14, complete sequence Length = 218356 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 59151 ccttctgtctactcctcttg 59170
>gb|AC153131.5| Mus musculus BAC clone RP24-356O12 from chromosome 19, complete sequence Length = 184864 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 35272 ccttctgtctactcctcttg 35291
>gb|AC161408.4| Mus musculus chromosome 1, clone RP24-329G10, complete sequence Length = 154449 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 76040 ccttctgtctactcctcttg 76059
>emb|AL732438.17| Mouse DNA sequence from clone RP23-317K5 on chromosome X, complete sequence Length = 157834 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 62535 ccttctgtctactcctcttg 62554
>gb|AC174478.3| Mus musculus BAC clone RP24-72B9 from chromosome y, complete sequence Length = 186313 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 84364 ccttctgtctactcctcttg 84383
>gb|AC102416.5| Mus musculus chromosome 18, clone RP24-492H24, complete sequence Length = 190211 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 52742 ccttctgtctactcctcttg 52723
>gb|AC099476.6| Rattus norvegicus BAC CH230-159G8 (Children's Hospital Oakland Research Institute) complete sequence Length = 208229 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 91393 ccttctgtctactcctcttg 91412
>dbj|AK081590.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130048D21 product:unclassifiable, full insert sequence Length = 3302 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ccactatgcccagcttgtgagaag 274 |||||||||||||||| ||||||| Sbjct: 45 ccactatgcccagcttttgagaag 22
>gb|AC153014.4| Mus musculus BAC clone RP23-203I6 from chromosome 19, complete sequence Length = 195382 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 183764 ccttctgtctactcctcttg 183783
>gb|AC115748.8| Mus musculus chromosome 1, clone RP23-13N24, complete sequence Length = 202092 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 169327 ccttctgtctactcctcttg 169308
>emb|BX530092.15| Mouse DNA sequence from clone RP23-45N17 on chromosome X, complete sequence Length = 136088 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 90794 ccttctgtctactcctcttg 90813
>gb|AC155837.7| Mus musculus 6 BAC RP24-409L6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156886 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ccttcatgaagcttgttctc 356 |||||||||||||||||||| Sbjct: 63687 ccttcatgaagcttgttctc 63706
>gb|AC153939.3| Mus musculus 10 BAC RP24-173I5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145018 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 53268 ccttctgtctactcctcttg 53249
>gb|AC069019.8|AC069019 Mus musculus BAC RP23-455N13 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 196175 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gaagtgtgttgagttggtgg 395 |||||||||||||||||||| Sbjct: 19681 gaagtgtgttgagttggtgg 19662
>gb|AC010401.7| Homo sapiens chromosome 16 clone CTD-2135D7, complete sequence Length = 119154 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 aggggcagcccactatgcccagct 265 ||||||| |||||||||||||||| Sbjct: 46059 aggggcaccccactatgcccagct 46082
>gb|AC124356.4| Mus musculus BAC clone RP24-484D12 from chromosome 12, complete sequence Length = 161982 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 25120 ccttctgtctactcctcttg 25139
>emb|BX842239.2| Mouse DNA sequence from clone RP23-454A1 on chromosome X, complete sequence Length = 58222 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 11520 ccttctgtctactcctcttg 11501
>gb|AC153535.4| Mus musculus 10 BAC RP23-398N22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 200061 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 72336 ccttctgtctactcctcttg 72317
>emb|AL808134.17| Mouse DNA sequence from clone RP23-135E1 on chromosome X, complete sequence Length = 195763 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 12968 ccttctgtctactcctcttg 12949
>gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, complete sequence Length = 176340 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ataaaatgatggaggtcctt 340 |||||||||||||||||||| Sbjct: 109971 ataaaatgatggaggtcctt 109990
>gb|AC154863.2| Mus musculus BAC clone RP23-1M22 from 12, complete sequence Length = 204102 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 4928 ccttctgtctactcctcttg 4909
>gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, complete sequence Length = 199709 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 96264 ccttctgtctactcctcttg 96283
>gb|AC107648.11| Mus musculus chromosome 19, clone RP23-126M4, complete sequence Length = 210931 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 183734 ccttctgtctactcctcttg 183753
>gb|AC154381.2| Mus musculus BAC clone RP23-42E2 from 16, complete sequence Length = 201052 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 169363 ccttctgtctactcctcttg 169382
>gb|AC171680.5| Mus musculus chromosome 7, clone RP23-146B24, complete sequence Length = 200031 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 195809 ccttctgtctactcctcttg 195790 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 144107 ccttctgtctactcctcttg 144088
>emb|BX530025.6| Mouse DNA sequence from clone RP23-14E18 on chromosome X, complete sequence Length = 104719 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 11520 ccttctgtctactcctcttg 11501
>emb|CT030656.7| Mouse DNA sequence from clone RP23-271O7 on chromosome 9, complete sequence Length = 215427 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 56669 ccttctgtctactcctcttg 56688
>emb|BX072557.8| Mouse DNA sequence from clone RP23-79L4 on chromosome X, complete sequence Length = 198694 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 13575 ccttctgtctactcctcttg 13556
>gb|AC116886.6| Mus musculus chromosome 5, clone RP24-441G10, complete sequence Length = 168069 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 37777 ccttctgtctactcctcttg 37758
>emb|AL844177.15| Mouse DNA sequence from clone RP23-414O19 on chromosome 4, complete sequence Length = 144217 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 52618 ccttctgtctactcctcttg 52637
>emb|CT030664.5| Mouse DNA sequence from clone RP23-357K7 on chromosome 13, complete sequence Length = 192064 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 25224 ccttctgtctactcctcttg 25243
>gb|AC122854.4| Mus musculus BAC clone RP23-178L9 from 1, complete sequence Length = 197331 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 38754 ccttctgtctactcctcttg 38773
>emb|AL844564.14| Mouse DNA sequence from clone RP23-400D4 on chromosome 11, complete sequence Length = 196136 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 gaagtgtgttgagttggtgg 395 |||||||||||||||||||| Sbjct: 14601 gaagtgtgttgagttggtgg 14620
>gb|U63919.1|XLU63919 Xenopus laevis An4a mRNA, complete cds Length = 3112 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ggacaatgctcttctgtctg 494 |||||||||||||||||||| Sbjct: 390 ggacaatgctcttctgtctg 409
>gb|AC170262.2| Mus musculus BAC clone RP23-163J7 from chromosome 17, complete sequence Length = 219714 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 46760 ccttctgtctactcctcttg 46779
>emb|AL683818.12| Mouse DNA sequence from clone RP23-229B23 on chromosome 4, complete sequence Length = 210718 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 109363 ccttctgtctactcctcttg 109344
>emb|AL713897.7| Mouse DNA sequence from clone RP23-373J8 on chromosome X, complete sequence Length = 166240 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 25147 ccttctgtctactcctcttg 25128
>emb|AL672222.11| Mouse DNA sequence from clone RP23-330A15 on chromosome X, complete sequence Length = 194025 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 57234 ccttctgtctactcctcttg 57215
>emb|AL844221.6| Mouse DNA sequence from clone RP23-445C3 on chromosome X, complete sequence Length = 188627 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 29437 ccttctgtctactcctcttg 29456
>emb|AL732470.7| Mouse DNA sequence from clone RP23-38D3 on chromosome X, complete sequence Length = 220069 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 67696 ccttctgtctactcctcttg 67715
>emb|AL671871.4| Mouse DNA sequence from clone RP23-157M14 on chromosome 4, complete sequence Length = 199593 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 183111 ccttctgtctactcctcttg 183130
>emb|AL670838.3| Mouse DNA sequence from clone RP23-474L1 on chromosome 4, complete sequence Length = 114419 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccttctgtctactcctcttg 112 |||||||||||||||||||| Sbjct: 83461 ccttctgtctactcctcttg 83480 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,578,025 Number of Sequences: 3902068 Number of extensions: 4578025 Number of successful extensions: 104405 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103978 Number of HSP's gapped (non-prelim): 426 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)