ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd14j01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_507291.1| PREDICTED Oryza sativa (japonica cultivar-group... 38 6.4
2ref|XM_483295.1| Oryza sativa (japonica cultivar-group), mRNA 38 6.4
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.4
4dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.4
5dbj|AK106031.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.4
6dbj|AK072063.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.4
7gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 6.4
8gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 38 6.4

>ref|XM_507291.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0016N23.125
           mRNA
          Length = 1424

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 70  ccggcgtgacctccgccgc 88
           |||||||||||||||||||
Sbjct: 83  ccggcgtgacctccgccgc 101



to top

>ref|XM_483295.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1411

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 70 ccggcgtgacctccgccgc 88
          |||||||||||||||||||
Sbjct: 69 ccggcgtgacctccgccgc 87



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 70       ccggcgtgacctccgccgc 88
                |||||||||||||||||||
Sbjct: 25327110 ccggcgtgacctccgccgc 25327092



to top

>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0016N23
          Length = 147336

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 70     ccggcgtgacctccgccgc 88
              |||||||||||||||||||
Sbjct: 102295 ccggcgtgacctccgccgc 102277



to top

>dbj|AK106031.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D03,
          full insert sequence
          Length = 1411

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 70 ccggcgtgacctccgccgc 88
          |||||||||||||||||||
Sbjct: 69 ccggcgtgacctccgccgc 87



to top

>dbj|AK072063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110D22, full
           insert sequence
          Length = 1424

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 70  ccggcgtgacctccgccgc 88
           |||||||||||||||||||
Sbjct: 83  ccggcgtgacctccgccgc 101



to top

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 70      ccggcgtgacctccgccgcggcg 92
               |||||| ||||||||||||||||
Sbjct: 4466873 ccggcgagacctccgccgcggcg 4466851



to top

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 72      ggcgtgacctccgccgcgg 90
               |||||||||||||||||||
Sbjct: 2739489 ggcgtgacctccgccgcgg 2739471


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 347,318
Number of Sequences: 3902068
Number of extensions: 347318
Number of successful extensions: 17480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17376
Number of HSP's gapped (non-prelim): 104
length of query: 135
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 114
effective length of database: 17,151,101,840
effective search space: 1955225609760
effective search space used: 1955225609760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top