ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd14i14 |
|---|---|
| Clone Library Name | barley_pub |
>EF1G2_ORYSA (Q6YW46) Elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma| 2) Length = 418 Score = 197 bits (502), Expect = 1e-50 Identities = 93/104 (89%), Positives = 101/104 (97%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 ENTVS+VT+NKVGGFLQRMDLCRKYAFGKMLVIGSE PFKVKGLWLFRG +IP+FVM+EV Sbjct: 315 ENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEV 374 Query: 181 YDMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 312 YDMELYEWTKVD+SDEAQK+RV AMIEDLEPFEG+SLLDAKCFK Sbjct: 375 YDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGESLLDAKCFK 418
>EF1G1_ORYSA (Q9ZRI7) Elongation factor 1-gamma 1 (EF-1-gamma 1) (eEF-1B gamma| 1) Length = 418 Score = 196 bits (499), Expect = 2e-50 Identities = 92/104 (88%), Positives = 101/104 (97%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 ENTVS+VT+NKVGGFLQRMDLCRKYAFGKMLVIGSE PFKVKGLWLFRG +IP+FVM+EV Sbjct: 315 ENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEV 374 Query: 181 YDMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 312 YDMELYEWTKVD+SDEAQK+RV AMIEDLEPFEG++LLDAKCFK Sbjct: 375 YDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGEALLDAKCFK 418
>EF1G3_ORYSA (Q5Z627) Elongation factor 1-gamma 3 (EF-1-gamma 3) (eEF-1B gamma| 3) Length = 416 Score = 196 bits (498), Expect = 3e-50 Identities = 93/104 (89%), Positives = 99/104 (95%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 ENTVS+VT+NKVGGFLQRMDLCRKYAFGKMLVIGS PFKVKGLWLFRGQDIP+FVM+EV Sbjct: 313 ENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEV 372 Query: 181 YDMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 312 YDMELYEWTKVDLSDEAQK+RV AMIED EPFEG+ LLDAKCFK Sbjct: 373 YDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGEDLLDAKCFK 416
>EF1G1_ARATH (O04487) Probable elongation factor 1-gamma 1 (EF-1-gamma 1)| (eEF-1B gamma 1) Length = 414 Score = 184 bits (467), Expect = 1e-46 Identities = 85/104 (81%), Positives = 96/104 (92%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 EN VS+VTLNKVGGFLQRMDL RKY+FGKML+ GSE PFKVKGLWLFRG +IP+F+M+EV Sbjct: 311 ENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEV 370 Query: 181 YDMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 312 YDMELYEWTKVD+SDEAQK+RV MIED EPFEG++LLDAKCFK Sbjct: 371 YDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414
>EF1G2_ARATH (Q9FVT2) Probable elongation factor 1-gamma 2 (EF-1-gamma 2)| (eEF-1B gamma 2) Length = 413 Score = 184 bits (467), Expect = 1e-46 Identities = 85/104 (81%), Positives = 96/104 (92%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 EN VS+VTLNKVGGFLQRMDL RKY+FGKML+ GSE PFKVKGLWLFRG +IP+F+M+EV Sbjct: 310 ENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEV 369 Query: 181 YDMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 312 YDMELYEWTKVD+SDEAQK+RV MIED EPFEG++LLDAKCFK Sbjct: 370 YDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 413
>EF1G_PRUAV (Q9FUM1) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 422 Score = 184 bits (466), Expect = 1e-46 Identities = 88/104 (84%), Positives = 94/104 (90%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 ENTVS+VTLNKVGGFLQRMDL RKYAFGKMLVIGSE PFKVKGLWLFRGQ+IP FVM E Sbjct: 319 ENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPPFVMEEC 378 Query: 181 YDMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 312 YDMELY WTKVDLSDE QK+RV +IED EPFEG++LLDAKCFK Sbjct: 379 YDMELYNWTKVDLSDENQKERVNQVIEDQEPFEGEALLDAKCFK 422
>EF1G_TRYCR (P34715) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 411 Score = 70.1 bits (170), Expect = 3e-12 Identities = 36/104 (34%), Positives = 62/104 (59%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 +N + ++T N + G+ QRM+ RKYAFG L+IG E + LW+FRG+ +P ++ +V Sbjct: 310 DNKMQFMTANLIRGWFQRMEHVRKYAFGVALIIGEERRHDIVALWVFRGRGMPA-IVEDV 368 Query: 181 YDMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 312 D EL++W +V AQ++R+ + P + +L+ + FK Sbjct: 369 EDTELFDWEEV-ADVAAQRERITDYLSWEGPTIPRPVLEGRVFK 411
>EF1G_CARAU (Q90YC0) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 442 Score = 62.0 bits (149), Expect = 8e-10 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 4/108 (3%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 E T+S+++ N + G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++E Sbjct: 336 ELTMSFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQEL-AFTLSED 394 Query: 181 Y--DMELYEWTKVDLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 312 + D E Y W K+D+ E K V+ F+ G+S K FK Sbjct: 395 WQIDYESYTWRKLDVDSEECKTMVKEYFAWEGEFKHVGKSFNQGKIFK 442
>EF1G_CAEEL (P54412) Probable elongation factor 1-gamma (EF-1-gamma) (eEF-1B| gamma) Length = 398 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Frame = +1 Query: 7 TVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIP-EFVMNEVY 183 T+++++ N + G QR++ +K AF M++ G++ + G+W+++G + E + Sbjct: 296 TLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQV 355 Query: 184 DMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 312 D E Y WTK+D +A KK V + F G+ K FK Sbjct: 356 DYESYTWTKLDAKSDATKKEVNEYLMWEGDFGGKKFNQGKIFK 398
>EF1G_BRARE (Q6PE25) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 442 Score = 59.7 bits (143), Expect = 4e-09 Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 2/97 (2%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 E T+++++ N + G QR+D RK AF +++ G+ + G+W+FRGQD+ F +++ Sbjct: 336 ELTMAFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQDL-AFPLSDD 394 Query: 181 Y--DMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQ 285 + D E Y W K+D+ E K M+++ +EG+ Sbjct: 395 WQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427
>EF1G_SCHPO (P40921) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 409 Score = 57.8 bits (138), Expect = 2e-08 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Frame = +1 Query: 16 YVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQD-IPEFVMNEVYDME 192 ++T N +GGF QR++ RKY FG +VIG + G ++ +G D +P F + D Sbjct: 312 FMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAF--DVAPDWG 369 Query: 193 LYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK 312 Y +TK+D++ K +E +P EG+ + D K K Sbjct: 370 SYTFTKLDINKPEDKAFIEDAWAWDKPIEGREVADGKVCK 409
>EF1G_DROME (Q9NJH0) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 431 Score = 57.4 bits (137), Expect = 2e-08 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Frame = +1 Query: 16 YVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVY--DM 189 +++ N + G QR+D RK AF + + G + + G+W++RGQD+ F ++ + D Sbjct: 331 FMSCNLITGMFQRLDKMRKAAFASVCLFGEDGNSTISGIWVWRGQDL-AFTLSPDWQIDY 389 Query: 190 ELYEWTKVDLSDEAQKKRV 246 E+Y+W K+D E KK V Sbjct: 390 EVYDWKKLDAKSEETKKLV 408
>EF1GA_XENLA (P26642) Elongation factor 1-gamma-A (EF-1-gamma-A) (eEF-1B| gamma-A) (p47) Length = 436 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 E T ++++ N + G QR+D RK F +++ G+ + G+W+FRGQD+ F ++E Sbjct: 330 ELTQAFMSCNLITGMFQRLDKLRKTGFASVILFGTNNNSSISGVWVFRGQDL-AFTLSED 388 Query: 181 Y--DMELYEWTKVDLSDEAQKKRVE 249 + D E Y W K+D E K V+ Sbjct: 389 WQIDYESYNWRKLDSGSEECKTLVK 413
>EF1GB_XENLA (Q91375) Elongation factor 1-gamma-B (EF-1-gamma-B) (eEF-1B| gamma-B) (p47) Length = 437 Score = 56.2 bits (134), Expect = 5e-08 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 E T ++++ N + G QR+D RK AF +++ G+ + G+W+FRG D+ F ++E Sbjct: 331 ELTQTFMSCNLITGMFQRLDKLRKTAFASVILFGTNNNSTISGVWVFRGHDL-AFTLSED 389 Query: 181 Y--DMELYEWTKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCF 309 + D E Y W K+ E+ + M+++ +EG+ K F Sbjct: 390 WQIDYESYTWRKL----ESDSEECRTMVKEYFAWEGEFKHVGKAF 430
>EF1G_RAT (Q68FR6) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 436 Score = 55.8 bits (133), Expect = 6e-08 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 4/108 (3%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 E T ++++ N + G QR+D RK AF +++ G+ + G+W+FRGQD+ F ++ Sbjct: 330 ELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQDL-AFPLSPD 388 Query: 181 Y--DMELYEWTKVDLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 312 + D E Y W K+D E + V F+ G+++ K FK Sbjct: 389 WQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAVNQGKIFK 436
>EF1G_RABIT (P29694) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 436 Score = 55.5 bits (132), Expect = 8e-08 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 4/108 (3%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 E T ++++ N + G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++ Sbjct: 330 ELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGIWVFRGQEL-AFPLSPD 388 Query: 181 Y--DMELYEWTKVDLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 312 + D E Y W K+D S E + V F+ G++ K FK Sbjct: 389 WQVDYESYTWRKLDPSSEETQTLVREYFAWEGAFQHVGKAFNQGKVFK 436
>EF1G_MOUSE (Q9D8N0) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 436 Score = 54.3 bits (129), Expect = 2e-07 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 4/108 (3%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 E T ++++ N + G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++ Sbjct: 330 ELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQEL-AFPLSPD 388 Query: 181 Y--DMELYEWTKVDLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 312 + D E Y W K+D E + V F+ G+++ K FK Sbjct: 389 WQVDYESYTWRKLDPGSEETQTLVREYFSWEGTFQHVGKAVNQGKIFK 436
>EF1G_HUMAN (P26641) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 436 Score = 53.9 bits (128), Expect = 2e-07 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 E T ++++ N + G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++ Sbjct: 330 ELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQEL-AFPLSPD 388 Query: 181 Y--DMELYEWTKVDLSDEAQKKRVEAMIEDLEPFE--GQSLLDAKCFK 312 + D E Y W K+D E + V F+ G++ K FK Sbjct: 389 WQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 436
>EF1G_PIG (Q29387) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| (Fragment) Length = 432 Score = 53.5 bits (127), Expect = 3e-07 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 4/108 (3%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEV 180 E T ++++ N + G QR+D RK AF +++ G+ + G+W+FRGQ++ F ++ Sbjct: 326 ELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQEL-AFPLSPD 384 Query: 181 Y--DMELYEWTKVDLSDEAQKKRVEAMI--EDLEPFEGQSLLDAKCFK 312 + D E Y W K+D E + V E G++ K FK Sbjct: 385 WQVDYESYTWRKLDPGSEETQTLVREYFSWEGAYQHVGKAFNQGKIFK 432
>EF1G2_YEAST (P36008) Elongation factor 1-gamma 2 (EF-1-gamma 2) (Translation| elongation factor 1B gamma 2) (Eukaryotic elongation factor 1Bgamma 2) (eEF1Bgamma 2) Length = 412 Score = 53.1 bits (126), Expect = 4e-07 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 5/109 (4%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDI-PEFVMNE 177 E T+++++ N VGGF R+ KY FG ++V G + G + RGQD P F + Sbjct: 306 ELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDFAPAF--DV 363 Query: 178 VYDMELYEWTKVDLSDEAQKKRVEAMIEDLEPF----EGQSLLDAKCFK 312 D E YE+TK+D + E K+ V M +P E + ++D K K Sbjct: 364 APDWESYEYTKLDPTKEEDKEFVNNMWAWDKPVVVNGEDKEIVDGKVLK 412
>EF1G_ARTSA (P12261) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 429 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Frame = +1 Query: 16 YVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIP-EFVMNEVYDME 192 Y++ N + G QR++ RK AF + V G + + G+W++RGQD+ + + D E Sbjct: 329 YMSCNLITGMFQRIEKMRKQAFASVCVFGEDNDSSISGIWVWRGQDLAFKLSPDWQIDYE 388 Query: 193 LYEWTKVDLSDEAQKKRV 246 Y+W K+D + K V Sbjct: 389 SYDWKKLDPDAQETKDLV 406
>EF1G1_YEAST (P29547) Elongation factor 1-gamma 1 (EF-1-gamma 1) (Translation| elongation factor 1B gamma 1) (Eukaryotic elongation factor 1Bgamma 1) (eEF1Bgamma 1) (Calcium and membrane-binding protein 1) (Calcium phospholipid-binding protein) (CPBP) Length = 415 Score = 49.7 bits (117), Expect = 4e-06 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Frame = +1 Query: 1 ENTVSYVTLNKVGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQD-IPEFVMNE 177 E T+++++ N VGGF R+ KY FG ++V G + G + RGQD +P F + Sbjct: 309 ELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDYVPAF--DV 366 Query: 178 VYDMELYEWTKVDLSDEAQKKRVEAMIEDLEPF----EGQSLLDAKCFK 312 D E Y++ K+D +++ K+ + M +P E + ++D K K Sbjct: 367 APDWESYDYAKLDPTNDDDKEFINNMWAWDKPVSVNGEPKEIVDGKVLK 415
>Y115_ADE02 (P03290) Hypothetical protein E-115| Length = 115 Score = 31.2 bits (69), Expect = 1.6 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Frame = -2 Query: 331 PGSAPLT*STWRPARTAPRTAQGPRSWPQHASSGPHRRG---QPWSTHRAPCHRPRS*QT 161 P S PL T A PR + PR+ P RRG PWS P R ++ + Sbjct: 41 PSSTPLKVCTAPRAAPPPRASCAPRATP--------RRGWTMTPWSNATWPTRRAKT-GS 91 Query: 160 QGCPAHGRATVP*P*RAPQ 104 PA ++ P P R+P+ Sbjct: 92 ASAPAGPASSAPWPARSPE 110
>RPOA2_PYRHO (O93777) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)| Length = 397 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%) Frame = +1 Query: 121 VKGLWLFRGQDIPEFVMNEVYDM-----ELYEWTKVDLS---DEAQKKRVEAMIE 261 +K L +G+D+PE V E+Y+ E Y+ TKV++ DE K+ +A+IE Sbjct: 7 IKSLIEKKGKDLPESVKQELYEKLIKYNEKYKLTKVEVETIIDEVIKEYEKALIE 61
>SSB_SHEHA (P77953) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 226 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/73 (28%), Positives = 31/73 (42%) Frame = -2 Query: 295 PARTAPRTAQGPRSWPQHASSGPHRRGQPWSTHRAPCHRPRS*QTQGCPAHGRATVP*P* 116 P + AP+ P+ PQ A P +P S + P + Q+QG A P P Sbjct: 135 PQQQAPQQGYAPK--PQSAPQQPAYAPKPQSAPQQPAQQQGGYQSQGQQPQAPAYAPKPQ 192 Query: 115 RAPQNQSRASCQK 77 APQ + + Q+ Sbjct: 193 AAPQQRPAPAPQQ 205
>SI1L1_MOUSE (Q8C0T5) Signal-induced proliferation-associated 1-like protein 1| Length = 1782 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -3 Query: 417 QANSSKKRPTVSTLNFKS*IGSLPPPSRSQAVLRSLEALGVQQGLPLER 271 Q S + P S LN G +PPP R+ + RS+ + G PLER Sbjct: 1080 QVPSQLQSPMTSRLNAGKGDGKMPPPERAANIPRSISS----DGRPLER 1124
>SI1L1_HUMAN (O43166) Signal-induced proliferation-associated 1-like protein 1| (High-risk human papilloma viruses E6 oncoproteins targeted protein 1) (E6-targeted protein 1) Length = 1803 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -3 Query: 417 QANSSKKRPTVSTLNFKS*IGSLPPPSRSQAVLRSLEALGVQQGLPLER 271 Q S + P S LN G +PPP R+ + RS+ + G PLER Sbjct: 1080 QVPSQVQSPMTSRLNAGKGDGKMPPPERAANIPRSISS----DGRPLER 1124
>APTX_DROME (Q8MSG8) Protein aprataxin-like| Length = 662 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 295 PARTAPRTAQGPRSWPQHASSGPHRRGQPWSTHRAPCHRPRS 170 P R P + + P H SGP PW+ R PCH+ ++ Sbjct: 500 PFRNTPHLNRQSQK-PPHPRSGPRGPMAPWTGPRFPCHQQQN 540
>P320_TRYBB (P21787) Microtubule-associated protein P320 (Fragment)| Length = 290 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/54 (25%), Positives = 24/54 (44%) Frame = -3 Query: 195 ELHVIDLVHDKLRDVLPTEEPQSLDLEGRLRTNHEHLAKSIFAAQIHPLQEPAD 34 E H + H+ + + P+E Q + + TN H+ +S F H +P D Sbjct: 136 ESHFLTTTHEAYKPIDPSEYRQKRTVGEEVTTNMRHVDESHFLTTTHEAYKPID 189
>YOT5_CAEEL (P34651) Hypothetical protein ZK632.5| Length = 824 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 186 VIDLVHDKLRDVLPTEEPQSLDLEGRLRTNHEHLAKSIFA 67 V+ ++H L +VL T ++L E RLR H+ +IFA Sbjct: 640 VLRMLHTALNEVLETRNSETLTREPRLRYAFFHMNTTIFA 679
>AGRP_MOUSE (P56473) Agouti-related protein precursor| Length = 131 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +1 Query: 205 TKVDLSDEAQKKRVEAMIEDLEPFEGQSLLDAKCFK*AEHCLG 333 T D ++E ++ EA+ E L+P +S +C + E CLG Sbjct: 53 TTADRAEEVLLQKAEALAEVLDPQNRESRSPRRCVRLHESCLG 95
>RPOA2_PYRAB (Q9V113) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)| Length = 397 Score = 29.3 bits (64), Expect = 6.0 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%) Frame = +1 Query: 121 VKGLWLFRGQDIPEFVMNEVYDM-----ELYEWTKVDLS---DEAQKKRVEAMIE 261 +K L +G+D+PE V E+Y+ E Y+ TK ++ DE K+ A++E Sbjct: 7 IKSLIEKKGKDLPESVKQELYEKLIKYNEKYKLTKAEVETIIDEVVKEYERALVE 61
>AROC_STRT2 (Q5M555) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 388 Score = 29.3 bits (64), Expect = 6.0 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = -3 Query: 207 GPLIELHVIDLVHDKLRDVLPTEEPQSLDLEGRLRTNHEHLAKSIFAAQIHPLQEPADLV 28 G I LHVI+ H K D++ E D+E RL+T + HP ADLV Sbjct: 69 GAPITLHVINKDHQKWLDIMAVE-----DIEDRLKTKRK---------ITHPRPGHADLV 114 Query: 27 QG 22 G Sbjct: 115 GG 116
>AROC_STRT1 (Q5M0L9) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 388 Score = 29.3 bits (64), Expect = 6.0 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = -3 Query: 207 GPLIELHVIDLVHDKLRDVLPTEEPQSLDLEGRLRTNHEHLAKSIFAAQIHPLQEPADLV 28 G I LHVI+ H K D++ E D+E RL+T + HP ADLV Sbjct: 69 GAPITLHVINKDHQKWLDIMAVE-----DIEDRLKTKRK---------ITHPRPGHADLV 114 Query: 27 QG 22 G Sbjct: 115 GG 116
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 28.9 bits (63), Expect = 7.8 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Frame = -2 Query: 295 PARTAPRTAQGPRSWPQHASSGPHRRGQPWSTHRAPCHRP--RS*QTQGCPAHGRATVP* 122 P AP+T+ P + ASS P RR P +P RP R +T +A P Sbjct: 686 PRPRAPQTSSSPPPVRRGASSSPQRRQSP-----SPSTRPIRRVSRTPEPKKIKKAASP- 739 Query: 121 P*RAPQNQSRASCQKHICGTDPSAA 47 +PQ+ R S + + G+ AA Sbjct: 740 ---SPQSVRRVSSSRSVSGSPEPAA 761
>PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type-1| retrotransposable element R1 (Retrovirus-related Pol polyprotein from type I retrotransposable element R1) [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment) Length = 1004 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +1 Query: 34 VGGFLQRMDLCRKYAFGKMLVIGSEAPFKVKGLWLFRGQDIPEFVMNEVYDMELYEW 204 +G +LQ M+ R +++G +A V LW +G+++ +NE + L EW Sbjct: 74 LGPYLQYMENVRVKCGNTYMIMGMDAN-AVSPLWFSKGENLGRGRLNEANGLLLEEW 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,920,951 Number of Sequences: 219361 Number of extensions: 1416547 Number of successful extensions: 4418 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4244 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4406 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
