ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd14i10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OMP19_RHILO (Q98EC1) Outer membrane lipoprotein omp19 homolog pr... 32 1.2
2IBP1_MOUSE (P47876) Insulin-like growth factor-binding protein 1... 31 2.7
3BRCA2_RAT (O35923) Breast cancer type 2 susceptibility protein h... 30 3.5
4WNT9B_MOUSE (O35468) Protein Wnt-9b precursor (Wnt-15) (Wnt-14b) 30 4.6
5AUXI_BOVIN (Q27974) Auxilin 30 6.0
6VGLL2_MOUSE (Q8BGW8) Transcription cofactor vestigial-like prote... 29 7.8
7XKR4_PANTR (Q49LS4) XK-related protein 4 29 7.8
8XKR4_HUMAN (Q5GH76) XK-related protein 4 29 7.8
9ACVL1_RAT (P80203) Serine/threonine-protein kinase receptor R3 p... 29 7.8

>OMP19_RHILO (Q98EC1) Outer membrane lipoprotein omp19 homolog precursor|
          Length = 179

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 177 PGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVVSGR 19
           P +P S  P   P  P+ T VA   P G +    S       +G W A VSG+
Sbjct: 53  PASPGSTDPSKFPTAPANTQVASLPPDGQAPAGASDLSAAAVAGVWNASVSGQ 105



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>IBP1_MOUSE (P47876) Insulin-like growth factor-binding protein 1 precursor|
           (IGFBP-1) (IBP-1) (IGF-binding protein 1)
          Length = 272

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 183 CSPGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVVSGR 19
           C+P   ++ R GL P  P+ +   +  PAGC CC        L  GA C V + R
Sbjct: 32  CAPC--TAERLGLCPPVPA-SCPEISRPAGCGCCPTCA----LPMGAACGVATAR 79



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>BRCA2_RAT (O35923) Breast cancer type 2 susceptibility protein homolog (Fanconi|
            anemia group D1 protein homolog)
          Length = 3343

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 14/68 (20%)
 Frame = -1

Query: 186  WCSPGAPSSRRP--------------GLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLAS 49
            W +P    +R P              G  PR       +   P   SCC+P+G   PLA 
Sbjct: 3118 WSTPNKDPTREPYPASTCSASDLASGGQLPRSSPTDQQSYRSPL--SCCTPTGKSTPLAH 3175

Query: 48   GAWCAVVS 25
             AW A  S
Sbjct: 3176 SAWMAAKS 3183



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>WNT9B_MOUSE (O35468) Protein Wnt-9b precursor (Wnt-15) (Wnt-14b)|
          Length = 359

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 22/53 (41%), Positives = 27/53 (50%)
 Frame = -1

Query: 192 WIWCSPGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCA 34
           W    PG P+    GLAPRP  G LV +E+    S C PS Y  P  +G  C+
Sbjct: 264 WAPAKPGGPAK---GLAPRP--GDLVYMEDSP--SFCRPSKY-SPGTAGRVCS 308



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>AUXI_BOVIN (Q27974) Auxilin|
          Length = 910

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 504 YTPIITHDEVHEYRTGHG--YMNISHTHTGRQVLIMYHLRST 385
           YT     + + EYR   G  ++ +S T  G  V+ MYHLRST
Sbjct: 262 YTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRST 303



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>VGLL2_MOUSE (Q8BGW8) Transcription cofactor vestigial-like protein 2 (Vgl-2)|
           (VITO1 protein)
          Length = 322

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -1

Query: 174 GAPSSRRPGLAPRP--PSGTLVAVEEPAGCSCCSPSG-YVRP---LASGAWCAVVSGRR 16
           G P    P  AP P  P   L A  EPAG +  +P G +V P   +A     +V SG+R
Sbjct: 246 GRPGRLAPASAPAPGSPPCELAAKGEPAGSAWAAPGGPFVSPTGDVAQSLGLSVDSGKR 304



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>XKR4_PANTR (Q49LS4) XK-related protein 4|
          Length = 650

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 150 GLAPRPPSGTLVAVEEPAGCSCCSPSG 70
           GLAP  PSG+    EE AG  CC   G
Sbjct: 33  GLAPGLPSGSGAEDEEAAGGGCCPDGG 59



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>XKR4_HUMAN (Q5GH76) XK-related protein 4|
          Length = 650

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 150 GLAPRPPSGTLVAVEEPAGCSCCSPSG 70
           GLAP  PSG+    EE AG  CC   G
Sbjct: 33  GLAPGLPSGSGAEDEEAAGGGCCPDGG 59



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>ACVL1_RAT (P80203) Serine/threonine-protein kinase receptor R3 precursor (EC|
           2.7.11.30) (SKR3) (TGF-B superfamily receptor type I)
           (TSR-I)
          Length = 504

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 138 RPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVVSGRRDPR 7
           +P  G LV       C+C +P    RP+  GAWC VV  R   R
Sbjct: 26  KPSRGQLV------NCTCENPH-CKRPICQGAWCTVVLVREQGR 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,274,500
Number of Sequences: 219361
Number of extensions: 1464573
Number of successful extensions: 4691
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4687
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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