ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14h19 |
|---|---|
| Clone Library Name | barley_pub |
>RL13_ARATH (P41127) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 206 Score = 242 bits (618), Expect = 4e-64 Identities = 121/154 (78%), Positives = 136/154 (88%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 AVKIFPRPTSGPLRP+V QT KYNMK R G+GFTLEELK AGIPKKLAPTIGI+VDHRR Sbjct: 41 AVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRR 100 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 KNRSLEG+Q+N+QRLKTYK KLVIFPRRARKVKAGDSTPEELA ATQVQGDY+PI R EK Sbjct: 101 KNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVR-EK 159 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 +EL+K+T EMK+FKA+ K+ +ER N+R GAR Sbjct: 160 PTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193
>RL132_BRANA (P41129) 60S ribosomal protein L13-2 (Cold-induced protein C24B)| Length = 206 Score = 240 bits (612), Expect = 2e-63 Identities = 121/154 (78%), Positives = 135/154 (87%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 AVKIFPRPT+GPLRP+V QT KYNMK R G+GFTLEELK AGIPKKLAPTIGIS+DHRR Sbjct: 41 AVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRR 100 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 KNRSLEG+QSN+QRLKTYKAKLVIFPRRARKVKAGDST EELA ATQVQGDYMPI R EK Sbjct: 101 KNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVR-EK 159 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + +EL+K+T EMK+ AY K+ +ER N+R GAR Sbjct: 160 QAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193
>RL131_BRANA (P41128) 60S ribosomal protein L13-1 (Cold-induced protein C24A)| Length = 206 Score = 239 bits (611), Expect = 3e-63 Identities = 121/154 (78%), Positives = 135/154 (87%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 AVKIFPRPT+GPLRP+V QT KYNMK R G+GFTLEELK+AGIPKKLAPTIGI+VDHRR Sbjct: 41 AVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRR 100 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 KNRSLEG+QSN+QRLKTYKAKLVIFPRRARKVKAGDST EELA ATQVQGDYMPI R EK Sbjct: 101 KNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVR-EK 159 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 EL+K+T EMK+ KA+ K+ +ER N+R GAR Sbjct: 160 HATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193
>RL13_TOBAC (P49627) 60S ribosomal protein L13 (Clone 6.2.1)| Length = 202 Score = 191 bits (485), Expect = 1e-48 Identities = 99/154 (64%), Positives = 119/154 (77%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 AVKI PRPT+G LRPIV QT KYNMK R+GRGF+LEELK AGIPKKLAPTIGI+VDHRR Sbjct: 37 AVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRR 96 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +NRSLEG+Q+N+QRL+ + +LV+FPRRA + + P TATQV G YMPI R EK Sbjct: 97 RNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIER-EK 155 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + L KV ++MK+F AY KL VER N+R +GAR Sbjct: 156 HQLILSKVLKKMKSFNAYAKLRVERTNERHIGAR 189
>RL13_CHLSW (O48513) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 208 Score = 180 bits (457), Expect = 2e-45 Identities = 88/150 (58%), Positives = 115/150 (76%) Frame = +2 Query: 14 FPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRRKNRS 193 FPRP +G L+PIV+CQT KYN K R GRGFTLEELK AGIP K APT+GI+VDHRRKNRS Sbjct: 46 FPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRS 105 Query: 194 LEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRLVE 373 LE +Q+N+QRLKTY+A LVIFPR +K KA +++ + + A+Q +G+ +P+ +G K +E Sbjct: 106 LETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPL-KGTKPALE 164 Query: 374 LMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 L+K+T +MK YGKL +ER+N R G R Sbjct: 165 LVKITADMKEGSQYGKLRIERVNARLKGMR 194
>RL13_BRARE (Q90Z10) 60S ribosomal protein L13| Length = 210 Score = 171 bits (434), Expect = 1e-42 Identities = 89/154 (57%), Positives = 111/154 (72%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +I PRP SGPLRP+V+C T +Y+ K RAGRGFTLEELK AGI KK+A TIGISVD RR Sbjct: 42 ARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +NRS E +Q+N+QRLK Y+ KL+IFPR+A K K GDST EEL ATQ+ G MPI + K Sbjct: 102 RNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHK 161 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + + ++E+ K FKA+ L + R N R G R Sbjct: 162 K-EKARVISEDEKNFKAFASLRMARANARLFGIR 194
>RL13_RAT (P41123) 60S ribosomal protein L13| Length = 210 Score = 162 bits (411), Expect = 4e-40 Identities = 84/154 (54%), Positives = 109/154 (70%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +I PRP SGP+RPIV+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR Sbjct: 42 ARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL ATQ+ G MPI R Sbjct: 102 RNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI-RNVY 160 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + + +TEE K FKA+ L + R N R G R Sbjct: 161 KKEKARAITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_CHICK (P41125) 60S ribosomal protein L13 (Breast basic conserved protein| 1) Length = 210 Score = 162 bits (411), Expect = 4e-40 Identities = 84/154 (54%), Positives = 109/154 (70%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +I PRP +GP+RPIV+C T +Y+ K RAGRGF+LEELK AGI K+ A TIGISVD RR Sbjct: 42 ARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+PEEL ATQ+ G MPI K Sbjct: 102 RNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFK 161 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 R + ++EE K FKA+ L + R N R G R Sbjct: 162 R-EKARVISEEEKNFKAFASLRMARANARLFGIR 194
>RL13_MOUSE (P47963) 60S ribosomal protein L13 (A52)| Length = 210 Score = 162 bits (409), Expect = 8e-40 Identities = 84/154 (54%), Positives = 109/154 (70%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +I PRP SGP+RPIV+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR Sbjct: 42 ARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL ATQ+ G MPI R Sbjct: 102 RNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI-RNVY 160 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + + +TEE K FKA+ L + R N R G R Sbjct: 161 KKEKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_ICTPU (Q90YV5) 60S ribosomal protein L13| Length = 210 Score = 162 bits (409), Expect = 8e-40 Identities = 85/154 (55%), Positives = 106/154 (68%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +I PRP +GPLRPIV+C T +YN K RAGRGFTLEELK AGI K++A TIGI+VD RR Sbjct: 42 ARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +NRS E + N+QRLK Y++KL++FPR+ K GDST EE+ ATQ+ G MPI K Sbjct: 102 RNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHK 161 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + M +TEE K F A+ L + R N R G R Sbjct: 162 KEKARM-ITEEEKKFNAFANLRMARANARLFGIR 194
>RL13_HUMAN (P26373) 60S ribosomal protein L13 (Breast basic conserved protein| 1) Length = 210 Score = 161 bits (408), Expect = 1e-39 Identities = 83/154 (53%), Positives = 109/154 (70%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +I PRP SGP+RPIV+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR Sbjct: 42 ARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL ATQ+ G MP+ R Sbjct: 102 RNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPV-RNVY 160 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + + +TEE K FKA+ L + R N R G R Sbjct: 161 KKEKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_DROME (P41126) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 218 Score = 161 bits (407), Expect = 1e-39 Identities = 81/154 (52%), Positives = 108/154 (70%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +FPRP SG LRP+V+C T +Y+ K RAGRGFTLEELK AGI A TIGI+VD RR Sbjct: 42 AKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 KN+SLE Q NIQRLK Y++KL++FP +K++AG+S+ EE ATQ++G +PI + Sbjct: 102 KNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQP 161 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 +VE +VT++ K FKA+ L R + R +G R Sbjct: 162 AVVEFREVTKDEKKFKAFATLRKARTDARLVGIR 195
>RL13_BOVIN (Q56JZ1) 60S ribosomal protein L13| Length = 210 Score = 160 bits (405), Expect = 2e-39 Identities = 83/154 (53%), Positives = 108/154 (70%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +I PRP SGPLRP+V+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR Sbjct: 42 ARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N+ E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL ATQ+ G MPI R Sbjct: 102 RNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI-RNVY 160 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + + +TEE K FKA+ L + R N R G R Sbjct: 161 KKEKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_CRIGR (Q9Z313) 60S ribosomal protein L13| Length = 210 Score = 158 bits (400), Expect = 8e-39 Identities = 83/154 (53%), Positives = 108/154 (70%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +I PRP SGP+RPIV+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR Sbjct: 42 ARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL ATQ+ G M I R Sbjct: 102 RNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRI-RNVY 160 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + + +TEE K FKA+ L + R N R G R Sbjct: 161 KKEKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_SCHMA (Q95043) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 184 Score = 142 bits (357), Expect = 8e-34 Identities = 69/133 (51%), Positives = 95/133 (71%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A +I PRP SGPLRPIV C T +YNMK R+GRGF+L+E++ AG+ K A TIGI+VDHRR Sbjct: 42 AQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N S+EG+Q N+ RLK YKAKL++FP K +A D+ +E+ ATQ++ +PIT+ K Sbjct: 102 RNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAK 161 Query: 362 RLVELMKVTEEMK 400 RL + E++ Sbjct: 162 RLKAHKPTSSELR 174
>RL13_LUMRU (O46157) 60S ribosomal protein L13| Length = 188 Score = 142 bits (357), Expect = 8e-34 Identities = 74/154 (48%), Positives = 104/154 (67%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A+ I PRP +G LRP V+CQT KYN + R GRGF+L+ELK AGI KK A IGISVD RR Sbjct: 19 ALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRR 78 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N+S+E +Q N+QRLK Y++KL++FP++ K GD+T EE+ ATQ++G +P T K Sbjct: 79 RNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIK 138 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + +T+E + K + +L R ++R G R Sbjct: 139 P-EKARAITDEERKVKVFDRLRQARAHKRLAGKR 171
>RL13_SCHPO (O74175) 60S ribosomal protein L13| Length = 208 Score = 138 bits (348), Expect = 9e-33 Identities = 77/154 (50%), Positives = 100/154 (64%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A KI PRP +RP V+ T +YNMK RAGRGFTLEELK AG+ +++A TIGI VDHRR Sbjct: 43 AAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +NRS E +Q N++R+K Y A L++FPR+A + K GD+T A T V +PIT ++ Sbjct: 102 RNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDVAA-VLPIT--QE 158 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + E +TEE K F A+ L ER R GAR Sbjct: 159 AVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192
>RL13_SPOFR (Q962U1) 60S ribosomal protein L13| Length = 219 Score = 137 bits (346), Expect = 2e-32 Identities = 71/154 (46%), Positives = 103/154 (66%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A + PRP +GPLRP+V+C T +Y+ K RAGRGFTL E++ AG+ A TIGI+VD RR Sbjct: 42 AKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N+S+E +Q N+QRLK Y+A+L++FP + +KV G++ EE ATQ++G MP+ + Sbjct: 102 RNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 160 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 + + +TEE K FKAY L R + +G R Sbjct: 161 KSI-ARAITEEEKDFKAYQYLRGARSIAKLVGIR 193
>RL13_CAEEL (P91128) 60S ribosomal protein L13| Length = 207 Score = 134 bits (338), Expect = 1e-31 Identities = 70/154 (45%), Positives = 103/154 (66%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 AV+I PRP +G LR +V+C ++YN K R GRGF+L+ELK AGI + A TIGI+VD RR Sbjct: 43 AVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRR 102 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 N++ EG+++N RLK YKAKL++FP++A K GDS+ EEL A Q++GD +P++ Sbjct: 103 TNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSH-TI 161 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 E +VT+ + + + L ER +++ G R Sbjct: 162 TFDEPRQVTDAERKVEIFRLLRKERADKKYRGKR 195
>RL13_CANAL (O59931) 60S ribosomal protein L13| Length = 202 Score = 105 bits (262), Expect = 8e-23 Identities = 65/154 (42%), Positives = 86/154 (55%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A KI PRP LRP+V+ T KYN K RAGRGFTL ELK GI K A TIGISVDHRR Sbjct: 43 AAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +N+S E +N+ RL+ YK+KLVIF ++ + + +++ V+ P Sbjct: 102 QNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVE---QPAPESGL 158 Query: 362 RLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 R VE+ + T AY L + R ++ G R Sbjct: 159 RAVEVPEQT-------AYRTLRLARNEKKYKGIR 185
>RL13A_YEAST (Q12690) 60S ribosomal protein L13-A| Length = 199 Score = 104 bits (259), Expect = 2e-22 Identities = 58/124 (46%), Positives = 78/124 (62%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A KI PRP LRP+V+ T KYN K RAGRGFTL E+K AG+ A TIGI+VDHRR Sbjct: 43 AAKIAPRPLD-LLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +NR+ E +N+QRLK Y++K+++FPR + +A E++ +A P T E Sbjct: 102 QNRNQEIFDANVQRLKEYQSKIIVFPRNGKAPEA-----EQVLSAAATFPIAQPATDVEA 156 Query: 362 RLVE 373 R V+ Sbjct: 157 RAVQ 160
>RL13B_YEAST (P40212) 60S ribosomal protein L13-B| Length = 199 Score = 103 bits (257), Expect = 3e-22 Identities = 58/124 (46%), Positives = 78/124 (62%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A KI PRP LRP+V+ T KYN K RAGRGFTL E+K AG+ A TIGI+VDHRR Sbjct: 43 AAKIAPRPLD-LLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEK 361 +NR+ E +N+QRLK Y++K+++FPR + +A E++ +A P T E Sbjct: 102 QNRNQEIFDANVQRLKEYQSKIIVFPRDGKAPEA-----EQVLSAAATFPIAQPATDVEA 156 Query: 362 RLVE 373 R V+ Sbjct: 157 RAVQ 160
>RL13_SACEX (Q876B2) 60S ribosomal protein L13| Length = 199 Score = 98.6 bits (244), Expect = 1e-20 Identities = 48/90 (53%), Positives = 64/90 (71%) Frame = +2 Query: 2 AVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRR 181 A KI PRP LRP+V+ T KYN K RAGRGFT E+K AG+ A TIGI+VDHRR Sbjct: 43 AAKIAPRPLD-LLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRR 101 Query: 182 KNRSLEGMQSNIQRLKTYKAKLVIFPRRAR 271 +N++ E + N+QRLK Y++K+++FPR + Sbjct: 102 QNKNQEMFELNVQRLKEYQSKIIVFPRNGK 131
>RL13E_AERPE (Q9YEN9) 50S ribosomal protein L13e| Length = 80 Score = 38.5 bits (88), Expect = 0.013 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Frame = +2 Query: 86 RAGRGFTLEELKTAGIPKKLAPTIGISVDHRRKN---RSLEGMQSNIQRLK 229 R GRGF+L EL AG+ K A +G+ VD RR+ ++E ++ I+RL+ Sbjct: 24 RRGRGFSLGELAEAGLDAKKARKLGLHVDTRRRTVHPWNVEALKKYIERLR 74
>RL13E_SULSO (Q97W05) 50S ribosomal protein L13e| Length = 79 Score = 37.7 bits (86), Expect = 0.022 Identities = 24/61 (39%), Positives = 35/61 (57%) Frame = +2 Query: 65 RKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAK 244 RKY R GRGF++ EL+ AG+ A +GI VD RRK+ + N++ LK + + Sbjct: 21 RKYK---RIGRGFSVGELEKAGLNINKARKLGIFVDIRRKSVH----EENVETLKKFSEQ 73 Query: 245 L 247 L Sbjct: 74 L 74
>RL13E_SULTO (P58469) 50S ribosomal protein L13e| Length = 77 Score = 36.6 bits (83), Expect = 0.048 Identities = 24/69 (34%), Positives = 38/69 (55%) Frame = +2 Query: 41 RPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 220 RP + + RK + K G+GF+L+ELK +G + A + + +D RRK E N++ Sbjct: 8 RPHYRFEIRKKDTKI--GKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPE----NVE 61 Query: 221 RLKTYKAKL 247 LK K +L Sbjct: 62 VLKKLKEQL 70
>FOSL2_MOUSE (P47930) Fos-related antigen 2| Length = 326 Score = 30.8 bits (68), Expect = 2.6 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%) Frame = +2 Query: 152 TIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQG 331 TIG +V RR++ L + +R++ + KL R R+ EL Q + Sbjct: 105 TIGTTVGRRRRDEQLSPEEEEKRRIRRERNKLAAAKCRNRR--------RELTEKLQAET 156 Query: 332 DYMPITRG--EKRLVELMKVTEEMKAFK-AYGKLC 427 + + + +K + EL K E+++ K A+G +C Sbjct: 157 EELEEEKSGLQKEIAELQKEKEKLEFMKVAHGPVC 191
>VATC_ARCFU (O29103) V-type ATP synthase subunit C (EC 3.6.3.14) (V-type ATPase| subunit C) Length = 342 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = +2 Query: 272 KVKAGDSTPEELATATQVQGDYMPITRGEKRLVELMKVTEEMKAFKAY 415 ++KA D+TP+E+ T + G Y +T E R + M + E +KA + Y Sbjct: 218 RLKAEDATPDEIMECT-IPGGY-ELTEEELRKLAAMPIDEMIKALEGY 263
>MURG_ENTHR (O07670) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 360 Score = 29.6 bits (65), Expect = 5.9 Identities = 23/99 (23%), Positives = 46/99 (46%) Frame = +2 Query: 86 RAGRGFTLEELKTAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRR 265 RAG ++ EL G+P L P+ ++ DH+ KN + + +K + + Sbjct: 262 RAG-ATSIAELTALGLPAILIPSPYVTNDHQTKNAMSLVKNNAAKMIKDDELDGRSLKQA 320 Query: 266 ARKVKAGDSTPEELATATQVQGDYMPITRGEKRLVELMK 382 ++ D ++++ A++ QG I +R+ EL+K Sbjct: 321 IEEIMTNDQLQKQMSLASKQQG----IPDASERMYELVK 355
>Y5181_BACCR (Q815H3) UPF0145 protein BC_5181| Length = 103 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +2 Query: 38 LRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDH 175 +R +V ++ Y K + R +EE+KT K +GI VD+ Sbjct: 39 VRDVVGGRSGAYESKLKEARDIAMEEMKTLARQKNANAIVGIDVDY 84
>Y4874_BACCZ (Q631H3) UPF0145 protein BCE33L4874| Length = 103 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +2 Query: 38 LRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDH 175 +R +V ++ Y K + R +EE+KT K +GI VD+ Sbjct: 39 VRDVVGGRSGAYESKLKEARDIAMEEMKTLARQKNANAIVGIDVDY 84
>Y4859_BACHK (Q6HBA8) UPF0145 protein BT9727_4859| Length = 103 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +2 Query: 38 LRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDH 175 +R +V ++ Y K + R +EE+KT K +GI VD+ Sbjct: 39 VRDVVGGRSGAYESKLKEARDIAMEEMKTLARQKNANAIVGIDVDY 84
>SYC_HAEIN (P43816) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 459 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 344 ITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 I RG + + V ++++FK YGKL + + Q Q GAR Sbjct: 129 IKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGAR 168
>SYC_HAEI8 (Q4QPG7) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 459 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 344 ITRGEKRLVELMKVTEEMKAFKAYGKLCVERMNQRQLGAR 463 I RG + + V ++++FK YGKL + + Q Q GAR Sbjct: 129 IKRGHAYVADNGDVMFDVESFKEYGKLSRQDLEQLQAGAR 168
>NRAM_IANII (O91745) Neuraminidase (EC 3.2.1.18)| Length = 469 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +1 Query: 10 DLPSPNIWSSSSHCAMPDSEVQHEG-KGW 93 D P N SSSSHC P++E G KGW Sbjct: 324 DTPRKNDSSSSSHCLNPNNEEGGHGVKGW 352
>YGI4_BACC1 (Q72XT9) UPF0145 protein BCE5284| Length = 103 Score = 28.9 bits (63), Expect = 10.0 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +2 Query: 38 LRPIVQCQTRKYNMKARAGRGFTLEELKTAGIPKKLAPTIGISVDH 175 +R +V + Y K + R +EE+KT K +GI VD+ Sbjct: 39 VRDVVGGRAGAYESKLKEARDIAMEEMKTFARQKNANAIVGIDVDY 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,142,574 Number of Sequences: 219361 Number of extensions: 1392535 Number of successful extensions: 4188 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4174 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
