ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14g18 |
|---|---|
| Clone Library Name | barley_pub |
>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25| Length = 561 Score = 32.7 bits (73), Expect = 0.79 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = -1 Query: 556 VAPDDQAYGDADDEPRAPEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNER 383 V+ DD+ Y + E R + RE+ G R ++ R R R+ +R+E +D + ER Sbjct: 228 VSDDDRGYRQSSREERDRKSSREEGGRSRSRDRYRNRSRERYRDRSREERSRDRSRER 285
>HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-like protein 1| (Adenovirus early region 1B-associated protein 5) (E1B-55 kDa-associated protein 5) (E1B-AP5) Length = 856 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -1 Query: 580 RLDVLVEQVAPDDQAYGDADDEPRAPEGVRED 485 RL +E PDD+ DADDEP P + E+ Sbjct: 32 RLQAALEAEEPDDERELDADDEPGRPGHINEE 63
>LIN10_CAEEL (O17583) Protein lin-10 (Abnormal cell lineage protein 10)| Length = 982 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = -1 Query: 574 DVLVEQVAPDDQAYGDADDEPRAPEGVREDAGGDRRQEDQR 452 ++LV D GD ++ +PE +E AGG+ + E++R Sbjct: 179 ELLVPTSTSSDVTIGDVIEKSDSPENSQESAGGEEKSEEKR 219
>VNS2_BTV1X (P10350) Nonstructural protein NS2| Length = 357 Score = 30.8 bits (68), Expect = 3.0 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Frame = -1 Query: 565 VEQVAPDDQAYGDADDEPRAPEGVREDAGGDRRQEDQRARQL*PIREVAR------KE*P 404 V+ VAP +++ DDE + E RE G R E R + +EVA E Sbjct: 173 VQSVAPREESRWMDDDEAKVDEEAREMIPGTSRLEKLREARSNVFKEVAAGINWNLDEKD 232 Query: 403 QDHNNERDPATNLPPYKGEEQRRHGEENVWDQETRQHV 290 ++ +ER+ + ++++ GE+ D+ + H+ Sbjct: 233 EEDGDEREDEERVKTLSDDDEQ--GEDASDDEHPKTHI 268
>SHK1_SCHPO (P50527) Serine/threonine-protein kinase pak1/shk1 (EC 2.7.11.1)| Length = 658 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -2 Query: 549 PMTRHTATPMMSH-EPLKVSAKMLGATAVRRIREPGSSSQSGKWRGKNSRRTTTTNAIQL 373 P+ +A SH +P ++ R P +SS S + +TTT+NA + Sbjct: 226 PLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQ 285 Query: 372 PISPLIKEKSREGMVK 325 P SPL+ KS + +++ Sbjct: 286 P-SPLVSSKSTDNIIR 300
>NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) Length = 2588 Score = 30.0 bits (66), Expect = 5.1 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%) Frame = -2 Query: 549 PMTRHTATPMMSHEPLKVSAKMLGATAVRRIREPGSSSQ-------SGKWRGKNSRRTTT 391 PMTR +++P +S PL+ +M + + I SQ S R + R T Sbjct: 2233 PMTRPSSSPSVSSLPLERPLRMTDSRLDKSIGAASPKSQAVEKTPASTGLRLSSPDRLLT 2292 Query: 390 TNAIQLPISPLIKEKSREGMVKKMYGTKRPVSMLVFQFV 274 TN+ + IS EKS + +++ ++ +S +V V Sbjct: 2293 TNSPKPQISDRPPEKSHASLTQRLPPPEKVLSAVVQSLV 2331
>SPB4_ASPOR (Q2UBZ5) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)| Length = 638 Score = 30.0 bits (66), Expect = 5.1 Identities = 22/84 (26%), Positives = 36/84 (42%) Frame = -1 Query: 547 DDQAYGDADDEPRAPEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNERDPATN 368 DD Y D E R E ++E GD QE R+ + K D N++ Sbjct: 518 DDYKYKDKQREKRRIELLQESKEGDGTQESSNKRKATETTAWSNK---LDDRNKKQK--- 571 Query: 367 LPPYKGEEQRRHGEENVWDQETRQ 296 + E+++R E+N W++ T + Sbjct: 572 ----RREQKQRRQEKNKWEKMTEE 591
>LEGA_PEA (P02857) Legumin A precursor [Contains: Legumin A alpha chain| (Legumin A acidic chain); Legumin A beta chain (Legumin A basic chain)] Length = 517 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/69 (28%), Positives = 31/69 (44%) Frame = -1 Query: 505 PEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNERDPATNLPPYKGEEQRRHGE 326 PE G R++ED+ + + +R+E +D + ER P QRR GE Sbjct: 259 PEKQARHQRGSRQEEDEDEEKQPRHQRGSRQEEEEDEDEERQP---------RHQRRRGE 309 Query: 325 ENVWDQETR 299 E D++ R Sbjct: 310 EEEEDKKER 318
>LEU22_BRAJA (Q89X34) 3-isopropylmalate dehydratase large subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 468 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 556 VAPDDQAYGDADDEPRAPEGVREDA 482 VAPD +AY D P+AP+G DA Sbjct: 235 VAPDQKAYDFLRDRPKAPKGAAWDA 259
>RCC2_XENLA (Q52KW8) Protein RCC2 homolog| Length = 513 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/55 (25%), Positives = 26/55 (47%) Frame = -2 Query: 447 GSSSQSGKWRGKNSRRTTTTNAIQLPISPLIKEKSREGMVKKMYGTKRPVSMLVF 283 GS G ++G N++R A + P + ++ E K+ G+K +L+F Sbjct: 46 GSPGSDGGFQGHNNKRGPAKGATKAPTAVIVTEPEHSKEKIKLEGSKAKGQLLIF 100
>FTSW_MYCTU (P63760) Probable cell division protein ftsW| Length = 469 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +2 Query: 440 ELPGSLILLTAVAPSIFADTFRGSWLIIGVAVCL--VIGCYLLHEHIK 577 +L SL+L T+ ++ T R SW++IG+ + + Y + EH++ Sbjct: 245 DLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVR 292
>FTSW_MYCBO (P63761) Probable cell division protein ftsW| Length = 469 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +2 Query: 440 ELPGSLILLTAVAPSIFADTFRGSWLIIGVAVCL--VIGCYLLHEHIK 577 +L SL+L T+ ++ T R SW++IG+ + + Y + EH++ Sbjct: 245 DLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVR 292
>CE152_HUMAN (O94986) Centrosomal protein of 152 kDa (Cep152 protein)| Length = 1275 Score = 29.3 bits (64), Expect = 8.7 Identities = 18/83 (21%), Positives = 37/83 (44%) Frame = -2 Query: 519 MSHEPLKVSAKMLGATAVRRIREPGSSSQSGKWRGKNSRRTTTTNAIQLPISPLIKEKSR 340 ++++P + SA+ G+ A ++ G N IQL + KE+ Sbjct: 100 VTYKPYQSSAQNNGSPAQEITGSDTFEGLQQQFLGANENSAENMQIIQLQVLNKAKERQL 159 Query: 339 EGMVKKMYGTKRPVSMLVFQFVL 271 E +++K+ ++R + L Q V+ Sbjct: 160 ENLIEKLNESERQIRYLNHQLVI 182
>YNJ1_YEAST (P53935) Hypothetical 141.5 kDa protein in YPT53-RHO2 intergenic| region Length = 1240 Score = 29.3 bits (64), Expect = 8.7 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Frame = -1 Query: 547 DDQAYGDADDEPRAPEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNERDPATN 368 D++ Y D + E V E G + ++ + + IRE DH + N Sbjct: 463 DEEDYDDYSEYAEDSEEVSEYEGIEAVEKPEHDEKSNGIRETLHLSYDHDHKRQ-----N 517 Query: 367 LPPYKGEEQRRHGEENVWDQETRQHVGLPVRLVQH----QEIYGGGEGEPLEK 221 P + H E+ + ++E + LP +H +I G E EP E+ Sbjct: 518 HPHHHYHSTSTHSEDELSEEEYISDIELPHDPHKHFHRDDDILDGDEDEPEEE 570
>MMTA2_MOUSE (Q99LX5) Multiple myeloma tumor-associated protein 2 homolog| Length = 260 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/75 (20%), Positives = 37/75 (49%) Frame = -1 Query: 517 EPRAPEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNERDPATNLPPYKGEEQR 338 +PRA + V DA ++ + ++ ++ ++ +K+ ++H E D ++ P + Sbjct: 168 KPRAEDKVEPDAESHKKSKKEKKKKKKKHKKHKKKK-DKEHKREADSCSSSPSPPRPRHQ 226 Query: 337 RHGEENVWDQETRQH 293 RH + + + R+H Sbjct: 227 RHSDFSPCSKRKREH 241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,099,789 Number of Sequences: 219361 Number of extensions: 1130124 Number of successful extensions: 4114 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4107 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
