ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14g16 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 129 bits (325), Expect = 2e-30 Identities = 62/65 (95%), Positives = 62/65 (95%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKLV HL KNFMTLPNIKIPL LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL Sbjct: 125 PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 184 Query: 182 ESGNA 196 ESGNA Sbjct: 185 ESGNA 189
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 127 bits (319), Expect = 8e-30 Identities = 59/65 (90%), Positives = 62/65 (95%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAF+DKLV H+ KNFMTLPNIK+PL LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL Sbjct: 137 PAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 196 Query: 182 ESGNA 196 ESGNA Sbjct: 197 ESGNA 201
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 127 bits (319), Expect = 8e-30 Identities = 59/64 (92%), Positives = 61/64 (95%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKL+ HL KNFMTLPNIK+PL LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL Sbjct: 123 PAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 182 Query: 182 ESGN 193 ESGN Sbjct: 183 ESGN 186
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 127 bits (318), Expect = 1e-29 Identities = 58/65 (89%), Positives = 62/65 (95%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAF+DKLV H+ KNFMTLPNIK+PL LG+WGGKGQGKSFQCELVFAKMGINPIMMSAGEL Sbjct: 139 PAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 198 Query: 182 ESGNA 196 ESGNA Sbjct: 199 ESGNA 203
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 126 bits (316), Expect = 2e-29 Identities = 59/65 (90%), Positives = 62/65 (95%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKLV H+ KNF++LPNIKIPL LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL Sbjct: 135 PAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 194 Query: 182 ESGNA 196 ESGNA Sbjct: 195 ESGNA 199
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 126 bits (316), Expect = 2e-29 Identities = 59/65 (90%), Positives = 62/65 (95%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKLV H+ KNF++LPNIKIPL LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL Sbjct: 135 PAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 194 Query: 182 ESGNA 196 ESGNA Sbjct: 195 ESGNA 199
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 125 bits (315), Expect = 2e-29 Identities = 58/64 (90%), Positives = 61/64 (95%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 P+FMDKLV H+ KNFMTLPNIK+PL LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL Sbjct: 126 PSFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 Query: 182 ESGN 193 ESGN Sbjct: 186 ESGN 189
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 125 bits (313), Expect = 4e-29 Identities = 58/65 (89%), Positives = 61/65 (93%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKLV H+ KNF+TLPNIK+PL LGIWGGKGQGKSFQCELV AKMGINPIMMSAGEL Sbjct: 135 PAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194 Query: 182 ESGNA 196 ESGNA Sbjct: 195 ESGNA 199
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 125 bits (313), Expect = 4e-29 Identities = 57/65 (87%), Positives = 61/65 (93%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKL H+ KNF+TLPNIK+PL LG+WGGKGQGKSFQCELVFAKMGINPIMMSAGEL Sbjct: 132 PAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 191 Query: 182 ESGNA 196 ESGNA Sbjct: 192 ESGNA 196
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 125 bits (313), Expect = 4e-29 Identities = 57/65 (87%), Positives = 61/65 (93%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKLV H+ KNF+TLPNIK+PL LG+WGGKGQGKSFQCELVF KMGINPIMMSAGEL Sbjct: 134 PAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 193 Query: 182 ESGNA 196 ESGNA Sbjct: 194 ESGNA 198
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 124 bits (311), Expect = 7e-29 Identities = 57/65 (87%), Positives = 61/65 (93%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKLV H+ KNF+ LPNIKIPL LG+WGGKGQGKSFQCELVFAK+GINPIMMSAGEL Sbjct: 133 PAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGEL 192 Query: 182 ESGNA 196 ESGNA Sbjct: 193 ESGNA 197
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 123 bits (308), Expect = 2e-28 Identities = 57/65 (87%), Positives = 60/65 (92%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKLV H+ KNF+ LPNIK+PL LGIWGGKGQGKSFQCELVF KMGINPIMMSAGEL Sbjct: 139 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 198 Query: 182 ESGNA 196 ESGNA Sbjct: 199 ESGNA 203
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 122 bits (307), Expect = 2e-28 Identities = 58/63 (92%), Positives = 59/63 (93%) Frame = +2 Query: 8 FMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 187 FMDKLV HL KNFMTLPNIK+PL LGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELES Sbjct: 133 FMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELES 192 Query: 188 GNA 196 GNA Sbjct: 193 GNA 195
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 122 bits (306), Expect = 3e-28 Identities = 57/65 (87%), Positives = 61/65 (93%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAFMDKLV H+ KNFMTLPN+K+PL LGIWGGKGQGKSFQCELVFAKM I+PIMMSAGEL Sbjct: 135 PAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGEL 194 Query: 182 ESGNA 196 ESGNA Sbjct: 195 ESGNA 199
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 121 bits (304), Expect = 4e-28 Identities = 55/65 (84%), Positives = 60/65 (92%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 P+FMDKLV H+ KNF+ LPNIK+PL LG+WGGKGQGKSFQCELVF KMGINPIMMSAGEL Sbjct: 139 PSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 198 Query: 182 ESGNA 196 ESGNA Sbjct: 199 ESGNA 203
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 106 bits (265), Expect = 1e-23 Identities = 47/65 (72%), Positives = 55/65 (84%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PAF+DK+ H+ KNFM LP IK+PL LGIWGGKGQGK+FQC L + K+GI PI+MSAGEL Sbjct: 108 PAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGEL 167 Query: 182 ESGNA 196 ESGNA Sbjct: 168 ESGNA 172
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 85.9 bits (211), Expect = 3e-17 Identities = 37/65 (56%), Positives = 49/65 (75%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 P F+DKL H+ KNF+ LP +++PL LGI G KG+GK+FQCEL F KMG+ ++S GEL Sbjct: 7 PRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGEL 66 Query: 182 ESGNA 196 ES +A Sbjct: 67 ESPDA 71
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 85.5 bits (210), Expect = 3e-17 Identities = 37/65 (56%), Positives = 49/65 (75%) Frame = +2 Query: 2 PAFMDKLVXHLXKNFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 P F+DKL H+ KNF+ +P +++PL LGI G KG+GK+FQCEL F KMGI ++S GEL Sbjct: 7 PRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGEL 66 Query: 182 ESGNA 196 ES +A Sbjct: 67 ESPDA 71
>CELR2_HUMAN (Q9HCU4) Cadherin EGF LAG seven-pass G-type receptor 2 precursor| (Epidermal growth factor-like 2) (Multiple epidermal growth factor-like domains 3) (Flamingo 1) Length = 2923 Score = 31.6 bits (70), Expect = 0.60 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = +1 Query: 22 CXP--SLQKLHDPAQHQDPTHXGYLGRQGSRKIIPV*ACVRQDGHQPHHDECRRAGEWER 195 C P SL ++ DP Q P G +GRQ R P A V +G + ++D C RA E Sbjct: 1926 CYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPF-AEVTTNGCEVNYDSCPRAIEAGI 1984 Query: 196 W 198 W Sbjct: 1985 W 1985
>CELR2_MOUSE (Q9R0M0) Cadherin EGF LAG seven-pass G-type receptor 2 precursor| (Flamingo 1) (mFmi1) Length = 2920 Score = 31.6 bits (70), Expect = 0.60 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = +1 Query: 22 CXP--SLQKLHDPAQHQDPTHXGYLGRQGSRKIIPV*ACVRQDGHQPHHDECRRAGEWER 195 C P SL ++ DP Q P G +GRQ R P A V +G + ++D C RA E Sbjct: 1927 CYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPF-AEVTTNGCEVNYDSCPRAIEAGI 1985 Query: 196 W 198 W Sbjct: 1986 W 1986
>CELR2_RAT (Q9QYP2) Cadherin EGF LAG seven-pass G-type receptor 2 (Multiple| epidermal growth factor-like domains 3) (Fragment) Length = 2144 Score = 31.6 bits (70), Expect = 0.60 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = +1 Query: 22 CXP--SLQKLHDPAQHQDPTHXGYLGRQGSRKIIPV*ACVRQDGHQPHHDECRRAGEWER 195 C P SL ++ DP Q P G +GRQ R P A V +G + ++D C RA E Sbjct: 1151 CYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPF-AEVTTNGCEVNYDSCPRAIEAGI 1209 Query: 196 W 198 W Sbjct: 1210 W 1210
>KADC2_ARATH (Q9FIJ7) Probable adenylate kinase 2, chloroplast precursor (EC| 2.7.4.3) (ATP-AMP transphosphorylase) Length = 283 Score = 30.4 bits (67), Expect = 1.3 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +2 Query: 71 PLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 PL + I G GK QCEL+ K G+ + +SAG+L Sbjct: 64 PLKIMISGAPASGKGTQCELITHKYGL--VHISAGDL 98
>KAD1_CAEEL (Q20140) Probable adenylate kinase isoenzyme F38B2.4 (EC 2.7.4.3)| (ATP-AMP transphosphorylase) Length = 210 Score = 29.3 bits (64), Expect = 3.0 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +2 Query: 41 NFMTLPNIKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 N L +P+ I GG G GK QC+ + AK G+ +S+G+L Sbjct: 11 NLAPLKAAGVPIFF-IVGGPGSGKGTQCDKIVAKYGLT--HLSSGDL 54
>COAE_CHLTE (Q8KD46) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 208 Score = 28.9 bits (63), Expect = 3.9 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +2 Query: 65 KIPLXLGIWGGKGQGKSFQCELVFAKMG 148 ++PL +G+ GG G GKS C ++ A+MG Sbjct: 4 RLPLLVGVTGGIGSGKSTVCAML-AEMG 30
>KAD_TRYBR (O61069) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| (AK) Length = 209 Score = 28.5 bits (62), Expect = 5.1 Identities = 13/38 (34%), Positives = 25/38 (65%) Frame = +2 Query: 68 IPLXLGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 181 IPL + I G G GK QC+ + ++G+ +++S+G++ Sbjct: 48 IPLQIFIAGPAGSGKRTQCKNIADRLGV--VLISSGQV 83
>URK_CLOPE (Q8XJI6) Uridine kinase (EC 2.7.1.48) (Uridine monophosphokinase)| (Cytidine monophosphokinase) Length = 208 Score = 28.1 bits (61), Expect = 6.6 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 62 IKIPLXLGIWGGKGQGKSFQCELVFAKMGINPIMM 166 +K P+ +GI GG G GKS + ++ + G + I M Sbjct: 1 MKRPIFIGITGGTGSGKSTIAKEIYRQFGEDCIAM 35
>UCK1_MOUSE (P52623) Uridine-cytidine kinase 1 (EC 2.7.1.48) (UCK 1) (Uridine| monophosphokinase 1) (Cytidine monophosphokinase 1) Length = 277 Score = 28.1 bits (61), Expect = 6.6 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 71 PLXLGIWGGKGQGKSFQCELVFAKMGINPI 160 P +G+ GG GKS CE + +G N + Sbjct: 23 PFLIGVSGGTASGKSTVCEKIMELLGQNEV 52
>UCK1_HUMAN (Q9HA47) Uridine-cytidine kinase 1 (EC 2.7.1.48) (UCK 1) (Uridine| monophosphokinase 1) (Cytidine monophosphokinase 1) Length = 277 Score = 28.1 bits (61), Expect = 6.6 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 71 PLXLGIWGGKGQGKSFQCELVFAKMGINPI 160 P +G+ GG GKS CE + +G N + Sbjct: 23 PFLIGVSGGTASGKSTVCEKIMELLGQNEV 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,271,535 Number of Sequences: 219361 Number of extensions: 506723 Number of successful extensions: 1410 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 1404 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1409 length of database: 80,573,946 effective HSP length: 41 effective length of database: 71,580,145 effective search space used: 1717923480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
