ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14g16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 375 bits (189), Expect = e-101 Identities = 195/198 (98%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 513 tcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaa 572 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 catcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattcca 632 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 633 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 692 Query: 181 ggagagtgggaacgctgg 198 |||||||||||||||||| Sbjct: 693 ggagagtgggaacgctgg 710
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 375 bits (189), Expect = e-101 Identities = 195/198 (98%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 258 tcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaa 317 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 catcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattcca 377 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 437 Query: 181 ggagagtgggaacgctgg 198 |||||||||||||||||| Sbjct: 438 ggagagtgggaacgctgg 455
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 329 bits (166), Expect = 2e-87 Identities = 187/195 (95%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| Sbjct: 433 tcctgctttcatggacaagcttgttgtccatctctccaagaacttcatgaccctgcccaa 492 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 493 catcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatccttcca 552 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 553 gtgtgagcttgtcttcgccaagatgggcatcaacccaatcatgatgagtgccggagagct 612 Query: 181 ggagagtgggaacgc 195 ||||||||| ||||| Sbjct: 613 ggagagtggcaacgc 627
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 274 bits (138), Expect = 1e-70 Identities = 177/191 (92%) Strand = Plus / Plus Query: 5 gctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatc 64 ||||||||||||||||| |||| ||| |||| ||| |||||||||||||||||||||||| Sbjct: 448 gctttcatggacaagctcgttgtccacctctccaagaacttcatgaccctgcccaacatc 507 Query: 65 aagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 124 |||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 508 aagatcccactcatcttgggtatctggggaggaaagggtcaggggaaatccttccagtgt 567 Query: 125 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggag 184 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 568 gagcttgtcttcgccaagatgggcatcaacccaatcatgatgagtgccggagagctggag 627 Query: 185 agtgggaacgc 195 || || ||||| Sbjct: 628 agcggcaacgc 638
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 274 bits (138), Expect = 1e-70 Identities = 177/191 (92%) Strand = Plus / Plus Query: 5 gctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatc 64 ||||||||||||||||| |||| ||| |||| ||| |||||||||||||||||||||||| Sbjct: 458 gctttcatggacaagctcgttgtccacctctccaagaacttcatgaccctgcccaacatc 517 Query: 65 aagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 124 |||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 518 aagatcccactcatcttgggtatctggggaggaaagggtcaggggaaatccttccagtgt 577 Query: 125 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggag 184 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 578 gagcttgtcttcgccaagatgggcatcaacccaatcatgatgagtgccggagagctggag 637 Query: 185 agtgggaacgc 195 || || ||||| Sbjct: 638 agcggcaacgc 648
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 240 bits (121), Expect = 1e-60 Identities = 175/194 (90%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 402 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 461 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 462 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 521 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctg 181 |||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 522 tgtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccggagagctg 581 Query: 182 gagagtgggaacgc 195 ||||| || ||||| Sbjct: 582 gagagcggcaacgc 595
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 240 bits (121), Expect = 1e-60 Identities = 175/194 (90%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 401 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 460 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 461 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 520 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctg 181 |||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 521 tgtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccggagagctg 580 Query: 182 gagagtgggaacgc 195 ||||| || ||||| Sbjct: 581 gagagcggcaacgc 594
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 240 bits (121), Expect = 1e-60 Identities = 175/194 (90%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 439 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 498 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 499 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 558 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctg 181 |||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 559 tgtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccggagagctg 618 Query: 182 gagagtgggaacgc 195 ||||| || ||||| Sbjct: 619 gagagcggcaacgc 632
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 240 bits (121), Expect = 1e-60 Identities = 175/194 (90%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 438 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 497 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 498 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 557 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctg 181 |||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 558 tgtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccggagagctg 617 Query: 182 gagagtgggaacgc 195 ||||| || ||||| Sbjct: 618 gagagcggcaacgc 631
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 240 bits (121), Expect = 1e-60 Identities = 175/194 (90%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 222 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 281 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 282 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 341 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctg 181 |||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 342 tgtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccggagagctg 401 Query: 182 gagagtgggaacgc 195 ||||| || ||||| Sbjct: 402 gagagcggcaacgc 415
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 240 bits (121), Expect = 1e-60 Identities = 175/194 (90%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 443 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 502 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 503 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 562 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctg 181 |||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 563 tgtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccggagagctg 622 Query: 182 gagagtgggaacgc 195 ||||| || ||||| Sbjct: 623 gagagcggcaacgc 636
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 240 bits (121), Expect = 1e-60 Identities = 175/194 (90%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 437 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 496 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 497 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 556 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctg 181 |||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 557 tgtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccggagagctg 616 Query: 182 gagagtgggaacgc 195 ||||| || ||||| Sbjct: 617 gagagcggcaacgc 630
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 232 bits (117), Expect = 3e-58 Identities = 174/194 (89%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 450 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 509 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 510 atcaaggtcccactcaccctgggtatctggggaggcaagggtcagggaaaatccttccag 569 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctg 181 |||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 570 tgtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccggagagctg 629 Query: 182 gagagtgggaacgc 195 ||||| || ||||| Sbjct: 630 gagagcggcaacgc 643
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 230 bits (116), Expect = 1e-57 Identities = 164/181 (90%) Strand = Plus / Plus Query: 6 ctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatca 65 |||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||||||| Sbjct: 414 ctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaacatca 473 Query: 66 agatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 125 || |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 474 aggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagtgtg 533 Query: 126 agcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggaga 185 |||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 534 agctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccggagagctggaga 593 Query: 186 g 186 | Sbjct: 594 g 594
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 196 bits (99), Expect = 2e-47 Identities = 165/188 (87%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 ||||||||||||||||| | || || ||| |||||||||| | |||||||||||||| Sbjct: 403 ttcatggacaagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaag 462 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 || || ||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 463 attcctctcattttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaa 522 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct: 523 cttgtgttcgccaagatgggaatcaaccccatcatgatgagcgccggtgagctggagagc 582 Query: 188 gggaacgc 195 || ||||| Sbjct: 583 ggcaacgc 590
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 196 bits (99), Expect = 2e-47 Identities = 165/188 (87%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 ||||||||||||||||| | || || ||| |||||||||| | |||||||||||||| Sbjct: 266 ttcatggacaagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaag 325 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 || || ||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 326 attcctctcattttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaa 385 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct: 386 cttgtgttcgccaagatgggaatcaaccccatcatgatgagcgccggtgagctggagagc 445 Query: 188 gggaacgc 195 || ||||| Sbjct: 446 ggcaacgc 453
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 188 bits (95), Expect = 4e-45 Identities = 164/188 (87%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 ||||||||||||||||| | || || ||| |||||||||| | |||||||||||||| Sbjct: 102 ttcatggacaagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaag 161 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 || || ||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 162 attcctctcattttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaa 221 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct: 222 cttgtgttcgccaagatgggaatcaaccccatcatgatgagcgccggtgagctggagagc 281 Query: 188 gggaacgc 195 || ||||| Sbjct: 282 ggcaacgc 289
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 188 bits (95), Expect = 4e-45 Identities = 164/188 (87%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 ||||||||||||||||| | || || ||| |||||||||| | |||||||||||||| Sbjct: 296 ttcatggacaagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaag 355 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 || || ||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 356 attcctctcattttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaa 415 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct: 416 cttgtgttcgccaagatgggaatcaaccccatcatgatgagcgccggtgagctggagagc 475 Query: 188 gggaacgc 195 || ||||| Sbjct: 476 ggcaacgc 483
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 188 bits (95), Expect = 4e-45 Identities = 164/188 (87%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 |||||||||||||| | | ||| ||| ||| ||||||||||| || |||||||||||| Sbjct: 416 ttcatggacaagctcatcgtccacctcgccaagaacttcatgacactccccaacatcaag 475 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 |||| ||||| |||||||||||||||||||||| || || || || |||||||| ||| Sbjct: 476 gtccctctcatcctgggtatctggggaggcaagggacagggcaagtcgttccagtgcgag 535 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 536 ctggtgttcgccaagatgggcatcaaccccatcatgatgagcgccggagagctggagagc 595 Query: 188 gggaacgc 195 || ||||| Sbjct: 596 ggcaacgc 603
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 576 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 635 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 636 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 695 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 696 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 755 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 756 tgagagtggaaacgc 770
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 576 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 635 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 636 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 695 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 696 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 755 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 756 tgagagtggaaacgc 770
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 605 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 664 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 665 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 724 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 725 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 784 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 785 tgagagtggaaacgc 799
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||| ||||||||||||||||||| || || ||| ||||||||| |||| || || Sbjct: 285 tcctgcattcatggacaagcttgttgttcacatcaccaagaacttcatgtccctccctaa 344 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||| ||| | || || || |||||||| ||||||||||| |||||||||||||| ||||| Sbjct: 345 cattaaggttcctctaatcttgggtatttggggaggcaaaggtcaaggaaaatctttcca 404 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || Sbjct: 405 atgtgagcttgtgtttgccaagatgggtatcaaccccatcatgatgagtgccggagaact 464 Query: 181 ggagagtgggaacgc 195 ||| ||||| ||||| Sbjct: 465 ggaaagtggaaacgc 479
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 487 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 546 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 547 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 606 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 607 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 666 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 667 tgagagtggaaacgc 681
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 402 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 461 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 462 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 521 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 522 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 581 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 582 tgagagtggaaacgc 596
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 490 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 549 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 550 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 609 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 610 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 669 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 670 tgagagtggaaacgc 684
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 479 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 538 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 539 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 598 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 599 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 658 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 659 tgagagtggaaacgc 673
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 487 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 546 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 547 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 606 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 607 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 666 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 667 tgagagtggaaacgc 681
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 490 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 549 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 550 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 609 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 610 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 669 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 670 tgagagtggaaacgc 684
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 186 bits (94), Expect = 2e-44 Identities = 169/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 605 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 664 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 665 catcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttcca 724 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 725 gtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagct 784 Query: 181 ggagagtgggaacgc 195 |||||||| ||||| Sbjct: 785 tgagagtggaaacgc 799
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 186 bits (94), Expect = 2e-44 Identities = 166/191 (86%) Strand = Plus / Plus Query: 5 gctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatc 64 |||||||||||||||||||| | || || ||||||||||||||| || |||||||| Sbjct: 491 gctttcatggacaagcttgtcgttcacatcaccaaaaacttcatgactctccccaacata 550 Query: 65 aagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 124 ||| | || ||||| ||||||||||||||||| || |||||||| ||||| ||||||||| Sbjct: 551 aaggttcctctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgt 610 Query: 125 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggag 184 |||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 611 gagcttgtctttgccaagatgggaatcaaccccatcatgatgagtgccggagaattggag 670 Query: 185 agtgggaacgc 195 || || ||||| Sbjct: 671 agcggcaacgc 681
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 180 bits (91), Expect = 1e-42 Identities = 136/152 (89%) Strand = Plus / Minus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 109395 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 109336 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 109335 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 109276 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaa 153 |||||||| || |||||||||||||| ||||| Sbjct: 109275 tgtgagctcgtcttcgccaagatggggatcaa 109244 Score = 60.0 bits (30), Expect = 3e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 154 ccccatcatgatgagtgccggagagctggagagtgggaacgc 195 ||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 109158 ccccatcatgatgagcgccggagagctggagagcggcaacgc 109117 Score = 44.1 bits (22), Expect = 0.16 Identities = 34/38 (89%) Strand = Plus / Minus Query: 116 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 153 ||||||||||| || || |||||||||||||| ||||| Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaa 112869 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 catcatgatgagtgccggagagc 179 |||||||||||| |||||||||| Sbjct: 112794 catcatgatgagcgccggagagc 112772
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 180 bits (91), Expect = 1e-42 Identities = 136/152 (89%) Strand = Plus / Minus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 31272 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 31213 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 31212 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 31153 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaa 153 |||||||| || |||||||||||||| ||||| Sbjct: 31152 tgtgagctcgtcttcgccaagatggggatcaa 31121 Score = 60.0 bits (30), Expect = 3e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 154 ccccatcatgatgagtgccggagagctggagagtgggaacgc 195 ||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 31035 ccccatcatgatgagcgccggagagctggagagcggcaacgc 30994 Score = 44.1 bits (22), Expect = 0.16 Identities = 34/38 (89%) Strand = Plus / Minus Query: 116 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 153 ||||||||||| || || |||||||||||||| ||||| Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaa 34746 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 catcatgatgagtgccggagagc 179 |||||||||||| |||||||||| Sbjct: 34671 catcatgatgagcgccggagagc 34649
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 180 bits (91), Expect = 1e-42 Identities = 163/188 (86%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 |||||||||||||| || | ||| |||| ||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 | || ||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 || || ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| Sbjct: 142 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccggcgagctggagagc 201 Query: 188 gggaacgc 195 || ||||| Sbjct: 202 ggcaacgc 209
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 180 bits (91), Expect = 1e-42 Identities = 163/188 (86%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 |||||||||||||| || | ||| |||| ||| ||||||||||||||||| ||||||||| Sbjct: 417 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 476 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 | || ||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 477 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 536 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 || || ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| Sbjct: 537 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccggcgagctggagagc 596 Query: 188 gggaacgc 195 || ||||| Sbjct: 597 ggcaacgc 604
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 180 bits (91), Expect = 1e-42 Identities = 136/152 (89%) Strand = Plus / Minus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 28304534 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 28304475 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 28304474 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 28304415 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaa 153 |||||||| || |||||||||||||| ||||| Sbjct: 28304414 tgtgagctcgtcttcgccaagatggggatcaa 28304383 Score = 60.0 bits (30), Expect = 3e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 154 ccccatcatgatgagtgccggagagctggagagtgggaacgc 195 ||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 28304297 ccccatcatgatgagcgccggagagctggagagcggcaacgc 28304256 Score = 44.1 bits (22), Expect = 0.16 Identities = 34/38 (89%) Strand = Plus / Minus Query: 116 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 153 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28308008 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 catcatgatgagtgccggagagc 179 |||||||||||| |||||||||| Sbjct: 28307933 catcatgatgagcgccggagagc 28307911
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 180 bits (91), Expect = 1e-42 Identities = 136/152 (89%) Strand = Plus / Minus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 |||||||||||||||||||| || | ||| ||| ||| |||||||||||||| |||||| Sbjct: 28286983 cctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaac 28286924 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 28286923 atcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccag 28286864 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaa 153 |||||||| || |||||||||||||| ||||| Sbjct: 28286863 tgtgagctcgtcttcgccaagatggggatcaa 28286832 Score = 60.0 bits (30), Expect = 3e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 154 ccccatcatgatgagtgccggagagctggagagtgggaacgc 195 ||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 28286746 ccccatcatgatgagcgccggagagctggagagcggcaacgc 28286705 Score = 44.1 bits (22), Expect = 0.16 Identities = 34/38 (89%) Strand = Plus / Minus Query: 116 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 153 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28290457 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 157 catcatgatgagtgccggagagc 179 |||||||||||| |||||||||| Sbjct: 28290382 catcatgatgagcgccggagagc 28290360
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 178 bits (90), Expect = 4e-42 Identities = 168/195 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||| ||||||||||||||||||| || || ||| ||||||||| |||| || || Sbjct: 286 tcctgcattcatggacaagcttgttgttcacatcagcaagaacttcatgtccctccctaa 345 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||| ||| | || || || ||||||| ||||||||||| |||||||||||||| ||||| Sbjct: 346 cattaaggttcctctaatcctgggtatttggggaggcaaaggtcaaggaaaatctttcca 405 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || Sbjct: 406 atgtgagcttgtgtttgccaagatgggtatcaaccccatcatgatgagtgccggagaact 465 Query: 181 ggagagtgggaacgc 195 ||| ||||| ||||| Sbjct: 466 ggaaagtggaaacgc 480
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 178 bits (90), Expect = 4e-42 Identities = 156/179 (87%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 |||||||||||||| | | ||| ||| ||| ||||||||||| || |||||||||||| Sbjct: 3138 ttcatggacaagctcatcgtccacctcgccaagaacttcatgacactccccaacatcaag 3197 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 | || ||||| |||||||||||||||||||||| || || || || |||||||||||| Sbjct: 3198 gttcctctcatcctgggtatctggggaggcaagggacagggcaagtcgttccagtgtgag 3257 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagag 186 || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 3258 ctggtgttcgccaagatgggcatcaaccccatcatgatgagcgccggtgagctggagag 3316 Score = 168 bits (85), Expect = 4e-39 Identities = 87/88 (98%) Strand = Plus / Plus Query: 66 agatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 125 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 126 agcttgtgttcgccaagatgggcatcaa 153 |||||||||||||||||||||||||||| Sbjct: 6130 agcttgtgttcgccaagatgggcatcaa 6157 Score = 121 bits (61), Expect = 9e-25 Identities = 65/67 (97%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 5854 tcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaa 5913 Query: 61 catcaag 67 ||||||| Sbjct: 5914 catcaag 5920 Score = 89.7 bits (45), Expect = 3e-15 Identities = 45/45 (100%) Strand = Plus / Plus Query: 154 ccccatcatgatgagtgccggagagctggagagtgggaacgctgg 198 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6408 ccccatcatgatgagtgccggagagctggagagtgggaacgctgg 6452
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 178 bits (90), Expect = 4e-42 Identities = 156/179 (87%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 |||||||||||||| | | ||| ||| ||| ||||||||||| || |||||||||||| Sbjct: 569 ttcatggacaagctcatcgtccacctcgccaagaacttcatgacactccccaacatcaag 628 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 | || ||||| |||||||||||||||||||||| || || || || |||||||||||| Sbjct: 629 gttcctctcatcctgggtatctggggaggcaagggacagggcaagtcgttccagtgtgag 688 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagag 186 || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 689 ctggtgttcgccaagatgggcatcaaccccatcatgatgagcgccggtgagctggagag 747
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 174 bits (88), Expect = 7e-41 Identities = 163/189 (86%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 ||||||||| ||||||||||||||| || || ||| |||||||||||| ||||||| Sbjct: 480 tcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatgaccttgcccaa 539 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | || ||||| | |||||||||||||||||||| |||||||| || ||||| Sbjct: 540 catcaaggttcctctcattcttggtatctggggaggcaagggacaaggaaagtctttcca 599 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 ||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||| | Sbjct: 600 atgtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagtgctggagagtt 659 Query: 181 ggagagtgg 189 ||| ||||| Sbjct: 660 ggaaagtgg 668
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 172 bits (87), Expect = 3e-40 Identities = 153/176 (86%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 ||||| || |||||||||||||||| || || ||| |||||| ||| | |||||||| Sbjct: 641 cctgcctttatggacaagcttgttgttcacatcaccaagaacttcttgaacttgcccaac 700 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||||| |||||||| |||||| | |||||||||||||||||||| ||||| ||||| Sbjct: 701 atcaagataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaa 760 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggaga 177 ||||||||||||||||||||| | || || |||||||||||||||||||||||||| Sbjct: 761 tgtgagcttgtgttcgccaagttaggaataaaccccatcatgatgagtgccggaga 816
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 170 bits (86), Expect = 1e-39 Identities = 164/191 (85%) Strand = Plus / Plus Query: 5 gctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatc 64 |||||||||||||||||||||| || || ||| |||| ||||||||| || ||||| Sbjct: 475 gctttcatggacaagcttgttgttcacatcaccaagaactacatgacccttcctaacatt 534 Query: 65 aagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 124 ||| | || || || |||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 535 aaggttcctcttatcttgggtatttggggaggcaaaggtcaaggaaaatctttccaatgt 594 Query: 125 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggag 184 |||||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 595 gagcttgtctttgccaagatgggaatcaaccccattatgatgagtgccggagaattggaa 654 Query: 185 agtgggaacgc 195 ||||||||||| Sbjct: 655 agtgggaacgc 665
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 168 bits (85), Expect = 4e-39 Identities = 157/182 (86%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 ||||||||||||||||| | ||| || ||| |||||| ||| || || ||||||||| Sbjct: 478 ttcatggacaagcttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaag 537 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 || || || || |||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 538 attcctctgatcttgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaa 597 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 ||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct: 598 cttgtttttgccaagatgggaatcaaccccatcatgatgagtgctggagagctggaaagt 657 Query: 188 gg 189 || Sbjct: 658 gg 659
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 168 bits (85), Expect = 4e-39 Identities = 157/182 (86%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 ||||||||||||||||| | ||| || ||| |||||| ||| || || ||||||||| Sbjct: 478 ttcatggacaagcttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaag 537 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 || || || || |||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 538 attcctctgatcttgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaa 597 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 ||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct: 598 cttgtttttgccaagatgggaatcaaccccatcatgatgagtgctggagagctggaaagt 657 Query: 188 gg 189 || Sbjct: 658 gg 659
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 168 bits (85), Expect = 4e-39 Identities = 154/178 (86%) Strand = Plus / Plus Query: 12 tggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaagatcc 71 ||||||||||||||| || || ||| |||||||||||| |||||||||||||| | | Sbjct: 487 tggacaagcttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttc 546 Query: 72 cactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttg 131 | ||||| | ||| |||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 547 ctctcattcttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttg 606 Query: 132 tgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagtgg 189 | || ||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| Sbjct: 607 tctttgccaagatgggaatcaaccccatcatgatgagtgctggagagttggaaagtgg 664
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 159 bits (80), Expect = 4e-36 Identities = 152/177 (85%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| ||| ||||||| Sbjct: 467 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgaaattgcccaa 526 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||||||||||||||||| |||||||| ||||||||||| Sbjct: 527 catcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggcaaatcattcca 586 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggaga 177 |||||| ||||| ||| |||||||| ||||||||||| ||||||||||| ||||| Sbjct: 587 gtgtgaacttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggaga 643
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 157 bits (79), Expect = 2e-35 Identities = 168/196 (85%), Gaps = 2/196 (1%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 471 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 530 Query: 61 catcaagatcccactcatnttgggtatct-ggggaggcaagggtcaaggaaaatcattcc 119 ||||||| | ||||| || ||||| ||| |||||||||| |||||||| ||||| |||| Sbjct: 531 catcaaggttccacttattttgggc-tctcggggaggcaaaggtcaaggtaaatccttcc 589 Query: 120 agtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagc 179 ||||||||||||| | ||||||||||| |||||||| |||||||||||||| ||||||| Sbjct: 590 agtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggagagc 649 Query: 180 tggagagtgggaacgc 195 | |||||||| ||||| Sbjct: 650 ttgagagtggaaacgc 665
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 153 bits (77), Expect = 2e-34 Identities = 161/190 (84%) Strand = Plus / Plus Query: 6 ctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatca 65 |||||||||||||| |||||| || || ||| |||| | ||| | |||| ||||||| Sbjct: 531 ctttcatggacaagattgttgttcacatcaccaagaactacttgaacttgcctaacatca 590 Query: 66 agatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 125 || | || || || |||||||| ||||||||||| |||||||| ||||| ||||| |||| Sbjct: 591 aggttcccctgatcttgggtatttggggaggcaaaggtcaaggtaaatccttccaatgtg 650 Query: 126 agcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggaga 185 |||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| | Sbjct: 651 agcttgtgttcgccaagatgggaatcaaccccatcatgatgagtgcgggagaattggaaa 710 Query: 186 gtgggaacgc 195 |||| ||||| Sbjct: 711 gtggaaacgc 720
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 151 bits (76), Expect = 1e-33 Identities = 151/177 (85%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||| ||||||||||||||||||||| || || ||| |||||| ||| ||||||| Sbjct: 437 tccttctttcatggacaagcttgttgttcacatcaccaagaacttcttgaaattgcccaa 496 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | |||||||| |||||| ||||||||||||| |||||||| ||||| ||||| Sbjct: 497 catcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggtaaatctttcca 556 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggaga 177 |||||||||||| ||| |||||||| |||||||| || ||||||||||||||||| Sbjct: 557 gtgtgagcttgtcttcagaaagatgggaatcaaccctattatgatgagtgccggaga 613
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 149 bits (75), Expect = 4e-33 Identities = 150/176 (85%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 ||||||||||||||||| ||||||| || || ||| |||||| |||| |||||||| Sbjct: 449 cctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaac 508 Query: 62 atcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccag 121 |||||| | |||||||| |||||| | ||||||||||| |||||||| ||||||||||| Sbjct: 509 atcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaa 568 Query: 122 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggaga 177 ||||||||||| ||| |||||||| ||||||||||| ||||||||||| ||||| Sbjct: 569 tgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggaga 624
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 143 bits (72), Expect = 2e-31 Identities = 159/189 (84%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 ||||||||| |||||||||||||||| || ||| ||||||||||||| | |||| || Sbjct: 165 tcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaacttgcctaa 224 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | || ||||| | ||||| ||||||||||||||||||||||| || ||||| Sbjct: 225 catcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaagtccttcca 284 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagct 180 ||||||||||| || || || |||| |||||||| || |||||||||||||| || || Sbjct: 285 atgtgagcttgtatttgcaaaattgggaatcaacccaattatgatgagtgccggtgaact 344 Query: 181 ggagagtgg 189 ||||||||| Sbjct: 345 ggagagtgg 353
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 143 bits (72), Expect = 2e-31 Identities = 157/188 (83%) Strand = Plus / Plus Query: 8 ttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatcaag 67 |||||||||||||| || | ||| |||| ||| ||||||||||||||||| ||||||||| Sbjct: 417 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 476 Query: 68 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 127 | || ||||| |||||||| ||||||||| || || |||||||| ||||| || ||| Sbjct: 477 gttcccctcatcctgggtatcgtgggaggcaaaggccagggaaaatcgttccaatgcgag 536 Query: 128 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggagagt 187 || || ||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct: 537 ctggtcttcgccaagatgggcatcannnnnatcatgatgagcgccggcgagctggagagc 596 Query: 188 gggaacgc 195 || ||||| Sbjct: 597 ggcaacgc 604
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 131 bits (66), Expect = 9e-28 Identities = 159/191 (83%) Strand = Plus / Plus Query: 5 gctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaacatc 64 ||||| |||||||||||||||| || || ||| |||||||||||||| || ||||| Sbjct: 491 gcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcctaacatg 550 Query: 65 aagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 124 ||| | || ||||| |||||||| ||||||||||| ||||| || || || |||||||| Sbjct: 551 aaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttccagtgc 610 Query: 125 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggagagctggag 184 |||||||| || ||||||||| | |||| ||| |||||||||||||||||||| |||| Sbjct: 611 gagcttgtctttgccaagatgagaatcagccctatcatgatgagtgccggagaattggaa 670 Query: 185 agtgggaacgc 195 ||||| ||||| Sbjct: 671 agtggaaacgc 681
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 127 bits (64), Expect = 1e-26 Identities = 148/177 (83%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| | || ||||||| Sbjct: 484 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaa 543 Query: 61 catcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattcca 120 ||||||| | ||||| || |||||| | |||||||| || |||||||| ||||||||||| Sbjct: 544 catcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattcca 603 Query: 121 gtgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccggaga 177 ||||||||||| ||| |||||||| |||||||| || ||||||||||| ||||| Sbjct: 604 atgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggaga 660
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 99.6 bits (50), Expect = 3e-18 Identities = 70/77 (90%) Strand = Plus / Plus Query: 66 agatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 125 |||| |||||||| |||||| | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 126 agcttgtgttcgccaag 142 ||||||||||||||||| Sbjct: 2298 agcttgtgttcgccaag 2314 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Plus Query: 154 ccccatcatgatgagtgccggaga 177 |||||||||||||||||||||||| Sbjct: 2421 ccccatcatgatgagtgccggaga 2444 Score = 40.1 bits (20), Expect = 2.5 Identities = 54/66 (81%) Strand = Plus / Plus Query: 2 cctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaac 61 ||||| || |||||||||||||||| || || ||| |||||| ||| | |||||||| Sbjct: 2080 cctgcctttatggacaagcttgttgttcacatcaccaagaacttcttgaacttgcccaac 2139 Query: 62 atcaag 67 |||||| Sbjct: 2140 atcaag 2145
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 97.6 bits (49), Expect = 1e-17 Identities = 72/80 (90%) Strand = Plus / Plus Query: 74 ctcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 133 ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245 Query: 134 ttcgccaagatgggcatcaa 153 || ||||||||||| ||||| Sbjct: 246 tttgccaagatgggaatcaa 265 Score = 52.0 bits (26), Expect = 7e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 154 ccccatcatgatgagtgccggagagctggagagtgggaacgc 195 |||||||||||||||||||||||| ||||||| || ||||| Sbjct: 467 ccccatcatgatgagtgccggagaattggagagcggcaacgc 508 Score = 42.1 bits (21), Expect = 0.63 Identities = 40/47 (85%) Strand = Plus / Plus Query: 5 gctttcatggacaagcttgttgnccatctctncaaaaacttcatgac 51 |||||||||||||||||||| | || || ||||||||||||||| Sbjct: 21 gctttcatggacaagcttgtcgttcacatcaccaaaaacttcatgac 67
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 93.7 bits (47), Expect = 2e-16 Identities = 80/91 (87%) Strand = Plus / Plus Query: 99 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccca 158 |||| ||||||||||| ||||| ||||||||| || ||||||||||| |||||||||| Sbjct: 7 agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaacccca 66 Query: 159 tcatgatgagtgccggagagctggagagtgg 189 ||||||||||||| |||||||| || ||||| Sbjct: 67 tcatgatgagtgctggagagcttgaaagtgg 97
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 87.7 bits (44), Expect = 1e-14 Identities = 73/83 (87%) Strand = Plus / Minus Query: 71 ccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 130 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674 Query: 131 gtgttcgccaagatgggcatcaa 153 || | ||||||||||| ||||| Sbjct: 14673 gtcatggccaagatgggtatcaa 14651 Score = 58.0 bits (29), Expect = 1e-05 Identities = 57/67 (85%) Strand = Plus / Minus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 14902 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 14843 Query: 61 catcaag 67 ||||||| Sbjct: 14842 catcaag 14836 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 158 atcatgatgagtgccggagagctggagagtgggaacgc 195 |||||||||||||| |||||||| |||||||| ||||| Sbjct: 14555 atcatgatgagtgctggagagcttgagagtggaaacgc 14518
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 87.7 bits (44), Expect = 1e-14 Identities = 109/131 (83%) Strand = Plus / Plus Query: 41 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 100 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 101 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 160 ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| || Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaaccctatt 641 Query: 161 atgatgagtgc 171 ||||||||||| Sbjct: 642 atgatgagtgc 652
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 87.7 bits (44), Expect = 1e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 98 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccc 157 ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |||| || Sbjct: 1 aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatcactcct 60 Query: 158 atcatgatgagtgccggaga 177 |||||||||||||||||||| Sbjct: 61 atcatgatgagtgccggaga 80
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 87.7 bits (44), Expect = 1e-14 Identities = 73/83 (87%) Strand = Plus / Plus Query: 71 ccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 130 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609 Query: 131 gtgttcgccaagatgggcatcaa 153 || | ||||||||||| ||||| Sbjct: 2610 gtcatggccaagatgggtatcaa 2632 Score = 58.0 bits (29), Expect = 1e-05 Identities = 57/67 (85%) Strand = Plus / Plus Query: 1 tcctgctttcatggacaagcttgttgnccatctctncaaaaacttcatgaccctgcccaa 60 |||||||||||||||||||||||||| || || ||| |||||| |||| ||||| || Sbjct: 2381 tcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaa 2440 Query: 61 catcaag 67 ||||||| Sbjct: 2441 catcaag 2447 Score = 52.0 bits (26), Expect = 7e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 158 atcatgatgagtgccggagagctggagagtgggaacgc 195 |||||||||||||| |||||||| |||||||| ||||| Sbjct: 2728 atcatgatgagtgctggagagcttgagagtggaaacgc 2765
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 81.8 bits (41), Expect = 7e-13 Identities = 76/88 (86%) Strand = Plus / Minus Query: 65 aagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 124 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 125 gagcttgtgttcgccaagatgggcatca 152 |||||||| || ||||||||||| |||| Sbjct: 7481 gagcttgtatttgccaagatgggaatca 7454
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 77.8 bits (39), Expect = 1e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 83 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 142 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874 Query: 143 atgggcatcaa 153 ||||||||||| Sbjct: 104873 atgggcatcaa 104863 Score = 40.1 bits (20), Expect = 2.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 158 atcatgatgagtgccggagagctggagagtgg 189 |||||||||||||| |||||||| || ||||| Sbjct: 104183 atcatgatgagtgctggagagctagaaagtgg 104152
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 77.8 bits (39), Expect = 1e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 83 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 142 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899 Query: 143 atgggcatcaa 153 ||||||||||| Sbjct: 83898 atgggcatcaa 83888 Score = 42.1 bits (21), Expect = 0.63 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2 cctgctttcatggacaagcttgttg 26 |||||||| |||||||||||||||| Sbjct: 84265 cctgcttttatggacaagcttgttg 84241 Score = 40.1 bits (20), Expect = 2.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 158 atcatgatgagtgccggagagctggagagtgg 189 |||||||||||||| |||||||| || ||||| Sbjct: 83208 atcatgatgagtgctggagagctagaaagtgg 83177
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 56.0 bits (28), Expect = 4e-05 Identities = 60/71 (84%) Strand = Plus / Plus Query: 41 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 100 ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| |||||| Sbjct: 1182 aacttcatggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaag 1241 Query: 101 ggtcaaggaaa 111 || || ||||| Sbjct: 1242 ggccagggaaa 1252
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 2e-04 Identities = 53/62 (85%) Strand = Plus / Plus Query: 41 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 100 ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| |||||| Sbjct: 411 aacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaag 470 Query: 101 gg 102 || Sbjct: 471 gg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 48.1 bits (24), Expect = 0.010 Identities = 44/51 (86%) Strand = Plus / Plus Query: 52 cctgcccaacatcaagatcccactcatnttgggtatctggggaggcaaggg 102 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccctgcccaacatcaagatc 70 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ttccagtgtgagcttgtgtt 135 |||||||||||||||||||| Sbjct: 97287 ttccagtgtgagcttgtgtt 97268
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccctgcccaacatcaagatc 70 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccctgcccaacatcaagatc 70 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302 (ENSANGG00000011813), partial mRNA Length = 1773 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tcgccaagatgggcatcaac 154 |||||||||||||||||||| Sbjct: 641 tcgccaagatgggcatcaac 660
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccctgcccaacatcaagatc 70 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccctgcccaacatcaagatc 70 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|AC168315.2| Mus musculus BAC clone RP23-318O7 from chromosome 10, complete sequence Length = 189627 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 gggaggcaagggtcaagga 109 ||||||||||||||||||| Sbjct: 77587 gggaggcaagggtcaagga 77605
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 aatcattccagtgtgagct 129 ||||||||||||||||||| Sbjct: 35534 aatcattccagtgtgagct 35516
>gb|AC114819.4| Mus musculus BAC clone RP23-52J20 from chromosome 8, complete sequence Length = 204239 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 aatcattccagtgtgagct 129 ||||||||||||||||||| Sbjct: 156544 aatcattccagtgtgagct 156526
>gb|AC124607.4| Mus musculus BAC clone RP23-84H10 from chromosome 12, complete sequence Length = 168842 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 gggtcaaggaaaatcattc 118 ||||||||||||||||||| Sbjct: 72360 gggtcaaggaaaatcattc 72342
>gb|AC146608.2| Mus musculus BAC clone RP23-159D24 from chromosome 12, complete sequence Length = 173569 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 gggtcaaggaaaatcattc 118 ||||||||||||||||||| Sbjct: 157370 gggtcaaggaaaatcattc 157388
>gb|AC002301.1|HUAC002301 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-328A3, complete sequence Length = 105485 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 173 ggagagctggagagtggga 191 ||||||||||||||||||| Sbjct: 79435 ggagagctggagagtggga 79417
>emb|AL138834.28| Human DNA sequence from clone RP11-113A10 on chromosome 9 Contains three seven transmembrane helix receptor pseudogenes, a pseudogene similar to part of a seven transmembrane helix receptor, the RECK gene for reversion-inducing-cysteine-rich protein with kazal motifs (ST15, hRECK) and a CpG island, complete sequence Length = 123413 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 aacttcatgaccctgccca 59 ||||||||||||||||||| Sbjct: 27323 aacttcatgaccctgccca 27305
>gb|AC131068.11| Mus musculus chromosome 15, clone RP23-383I12, complete sequence Length = 183651 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 110 aaatcattccagtgtgagcttgt 132 |||||||| |||||||||||||| Sbjct: 126919 aaatcattgcagtgtgagcttgt 126897
>gb|AC023831.9| Homo sapiens chromosome 16 clone RP11-74E23, complete sequence Length = 174007 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 173 ggagagctggagagtggga 191 ||||||||||||||||||| Sbjct: 25323 ggagagctggagagtggga 25341
>dbj|AK125559.1| Homo sapiens cDNA FLJ43571 fis, clone RECTM2000433, highly similar to ZG-16p Length = 1891 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 173 ggagagctggagagtggga 191 ||||||||||||||||||| Sbjct: 935 ggagagctggagagtggga 917
>gb|CP000134.1| Rhizobium etli CFN 42 plasmid p42a, complete sequence Length = 194229 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 96 gcaagggtcaaggaaaatcattc 118 ||||||| ||||||||||||||| Sbjct: 140671 gcaaggggcaaggaaaatcattc 140649
>gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, complete sequence Length = 144324 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 ggaggcaagggtcaaggaa 110 ||||||||||||||||||| Sbjct: 79706 ggaggcaagggtcaaggaa 79688
>ref|XM_930062.1| PREDICTED: Homo sapiens similar to zymogen granule protein 16 (LOC653808), mRNA Length = 1922 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 173 ggagagctggagagtggga 191 ||||||||||||||||||| Sbjct: 972 ggagagctggagagtggga 954
>gb|AC069476.25| Homo sapiens chromosome 11 clone b430h11 map 11, complete sequence Length = 184824 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 174 gagagctggagagtgggaa 192 ||||||||||||||||||| Sbjct: 154877 gagagctggagagtgggaa 154895
>gb|AC107208.6| Homo sapiens BAC clone RP13-487K5 from 4, complete sequence Length = 81763 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 ggaggcaagggtcaaggaa 110 ||||||||||||||||||| Sbjct: 13100 ggaggcaagggtcaaggaa 13082
>gb|AC009133.7| Homo sapiens chromosome 16 clone RP11-504I2, complete sequence Length = 174363 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 173 ggagagctggagagtggga 191 ||||||||||||||||||| Sbjct: 84570 ggagagctggagagtggga 84588
>dbj|AK195458.1| Mus musculus cDNA, clone:Y1G0118I21, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000018441, based on BLAT search Length = 352 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 54 tgcccaacatcaagatcccactc 76 |||||| |||||||||||||||| Sbjct: 244 tgcccaccatcaagatcccactc 266
>gb|AC007228.1|AC007228 Homo sapiens chromosome 19, BAC 37295 (CIT-B-21A4), complete sequence Length = 130067 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 aaaaacttcatgaccctgc 56 ||||||||||||||||||| Sbjct: 125636 aaaaacttcatgaccctgc 125654
>dbj|AP000999.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-667I23, complete sequence Length = 189892 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 105 aaggaaaatcattccagtgtgag 127 ||||| ||||||||||||||||| Sbjct: 162617 aaggacaatcattccagtgtgag 162595
>dbj|AP002853.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-46K15, complete sequence Length = 177463 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 105 aaggaaaatcattccagtgtgag 127 ||||| ||||||||||||||||| Sbjct: 80180 aaggacaatcattccagtgtgag 80158
>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete sequence Length = 208153 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 180 tggagagtgggaacgctgg 198 ||||||||||||||||||| Sbjct: 90247 tggagagtgggaacgctgg 90229
>dbj|AP000997.1| Homo sapiens DNA, chromosome 11q23.2, clone:194K16, the region having tumor suppressor activity, complete sequence Length = 130448 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 174 gagagctggagagtgggaa 192 ||||||||||||||||||| Sbjct: 74919 gagagctggagagtgggaa 74901
>dbj|AB065490.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_53 Length = 12932 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 aacttcatgaccctgccca 59 ||||||||||||||||||| Sbjct: 1561 aacttcatgaccctgccca 1579 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,446,012 Number of Sequences: 3902068 Number of extensions: 1446012 Number of successful extensions: 100848 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100599 Number of HSP's gapped (non-prelim): 216 length of query: 198 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 176 effective length of database: 17,147,199,772 effective search space: 3017907159872 effective search space used: 3017907159872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
