ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd14g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EAF7_KLULA (Q6CX31) Chromatin modification-related protein EAF7 30 7.2
2LAT3_MOUSE (Q8BSM7) Large neutral amino acids transporter small ... 30 7.2
3ENV_SIVG1 (Q02837) Envelope polyprotein GP160 precursor [Contain... 30 7.2
4DYRK3_HUMAN (O43781) Dual specificity tyrosine-phosphorylation-r... 29 9.5

>EAF7_KLULA (Q6CX31) Chromatin modification-related protein EAF7|
          Length = 402

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 24/100 (24%), Positives = 42/100 (42%)
 Frame = +1

Query: 226 RAASEEEDNSTAVALCHTDIESSCIEIDGQNNIDCCSTVTKCPPISSEPFTSQQPKPSRR 405
           R+ SE+E  + A     T   +   E +G       S   K     +E  +SQQP+P ++
Sbjct: 303 RSGSEKESTADAADTTATKQVTFADESEGAAKESANSPTGKAEENETE--SSQQPRPKKQ 360

Query: 406 NLRLRKDVPQDHSSCWYDDGRDESRSAGNLQWRSMERMRN 525
            +   ++VP+D +       R   +S      R   R+R+
Sbjct: 361 KVAAAEEVPEDLADVDSPARRTRRKSITKPTTRLSSRLRS 400



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>LAT3_MOUSE (Q8BSM7) Large neutral amino acids transporter small subunit 3|
           (L-type amino acid transporter 3) (Solute carrier family
           43 member 1)
          Length = 564

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 481 SAGNLQWRSMERMRNGDGGCNSVCSTNNRTRYRQD--YNSCSCDHQ 612
           SA  L W S+  M   +G  +S+C   NRT   QD  +   SCD Q
Sbjct: 27  SAVLLGWASLLIMLKKEGFYSSLCPAENRTNTTQDEQHQWTSCDQQ 72



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>ENV_SIVG1 (Q02837) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 854

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
 Frame = +1

Query: 241 EEDNSTAVALCHTDIESSCIEIDGQNNIDCCSTVTK-----CPPISSEPFTSQQPKPSRR 405
           E+     V L    I+ SC+E++G       +T T      C   S+E    +  +    
Sbjct: 93  EQTMRPCVKLSPICIKMSCVELNGTATTKATTTATTTMTTPCQNCSTEQIEGEMAEEPAS 152

Query: 406 NLRL-----RKDVPQDHSSCWYD 459
           N        ++DV +++S  WYD
Sbjct: 153 NCTFAIAGYQRDVKKNYSMTWYD 175



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>DYRK3_HUMAN (O43781) Dual specificity tyrosine-phosphorylation-regulated kinase|
           3 (EC 2.7.12.1)
          Length = 588

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 343 TKCPPISSEPFTSQQPKPSRRNLRLRKDVPQDHSSCWYDDG 465
           TKCPP S+      +P P RR     +    DH+  + D G
Sbjct: 41  TKCPPCSNVLCNPSEPPPPRRLNMTTEQFTGDHTQHFLDGG 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.129    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,309,123
Number of Sequences: 219361
Number of extensions: 1430000
Number of successful extensions: 4079
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4071
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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