>RL37A_HALMA (P60619) 50S ribosomal protein L37Ae|
          Length = 92

 Score = 36.6 bits (83), Expect = 0.052
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
 Frame = -1

Query: 542 GQLGMDRSEAPRYGSDQASRRRV-----ELEVQEAINGCGVNAARRSGEGVWWCXXXXXX 378
           G+ G       RYG  + SRRRV     E+    A   CG +   R G G+W C      
Sbjct: 6   GKTGSSGRFGARYG--RVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYK 63

Query: 377 XXXXGTKPDLVGG 339
                 KP+  GG
Sbjct: 64  FTGGSYKPETPGG 76

>ESPL1_HUMAN (Q14674) Separin (EC 3.4.22.49) (Separase) (Caspase-like protein|
            ESPL1) (Extra spindle poles-like 1 protein)
          Length = 2120

 Score = 35.8 bits (81), Expect = 0.089
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 568  SCC*QRAGEGSWGWTDP---KLPGMDPTKHQGDASSWRCRR 455
            SCC  +    SWGW  P    +PG +P+K QG   S R R+
Sbjct: 1281 SCCTTQLFASSWGWQPPLIKSVPGSEPSKTQGQKRSGRGRQ 1321

>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1|
           (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1)
          Length = 1600

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 25  PQLASSVRPQDRSSRSHASGRALLRASHASPSSTSVGE*SHRTPSARPLWRP 180
           PQ+A  +RP DRS  +   GR  L     SP + S       TPS  P+  P
Sbjct: 231 PQVAVIIRPDDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTPSPPPILEP 282

>FBRL_RAT (P22509) Fibrillarin (Nucleolar protein 1)|
          Length = 327

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = -3

Query: 393 RGGGTGWVSGNQAGSGRWRVEGRPGRRG 310
           RGGG G   G Q+G GR R  GR G+RG
Sbjct: 58  RGGGGGRGGGFQSGGGRGRGGGRGGKRG 85

>RAD52_EMENI (Q96UP6) DNA repair and recombination protein radC (RAD52 homolog)|
          Length = 582

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 19  SRPQLASSVRPQDRSSRSHASGRALLRASHASPSSTSVGE*SHRTPSA---RPLWRP 180
           S+P LA S  P    +R   +  A +     +PS + VG   +R PS    RPL RP
Sbjct: 454 SKPMLAGSASPLSNQTRDFINPSAEMHRKIGAPSGSVVGGPMNRGPSVSSYRPLTRP 510

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 20/45 (44%), Positives = 22/45 (48%)
 Frame = -3

Query: 444 LWGKRSPAEWRRCMVVRRGGGTGWVSGNQAGSGRWRVEGRPGRRG 310
           L G+     WR     RRGGG G   G + G GR    GR GRRG
Sbjct: 562 LGGRGRRGSWRGG---RRGGGAGASGGGRGGRGR----GRGGRRG 599

>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54 precursor|
          Length = 1901

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 483 ATRRAGGAGGHQWLWGKRSPAEWRRCMVVRRGGGTGWVSGNQAGSGRW 340
           A  +AGG GG   LWG   P            GG+G  +G   G+G W
Sbjct: 146 APGQAGGPGGPAGLWGNGGPG---------GAGGSGGGTGGAGGAGGW 184

>REL_MOUSE (P15307) C-Rel proto-oncogene protein (C-Rel protein)|
          Length = 587

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 308 HPRRPGRPSTRHRPDPAWFPLTHPVPPPLRTTIHLRHSAG 427
           HP  P  PS  H+P  +W P+THP   P+ T      SAG
Sbjct: 371 HP--PAIPSVAHQPT-SWPPVTHPTSHPVSTNTLSTFSAG 407

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)|
           (Protein kinase with no lysine 2) (Protein kinase,
           lysine-deficient 2)
          Length = 2297

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
 Frame = +3

Query: 333 QRATDQIRLGS---RSPTPCRLLCAPPYTFATPPGCVYPTAIDGL-LHLQLDASP*CLVG 500
           Q +   + LGS    +P+P + +C+PP +     G V P ++  L  + Q  A+P   VG
Sbjct: 629 QSSQQSVMLGSLADAAPSPAQCVCSPPVS----EGPVLPQSLPSLGAYQQPTAAPGLPVG 684

Query: 501 SIPGSF--GSVHPQLPSPAL 554
           S+P      S+    P PA+
Sbjct: 685 SVPAPACPPSLQQHFPDPAM 704

>FA20A_MOUSE (Q8CID3) Protein FAM20A precursor|
          Length = 541

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 25  PQLASSVRPQDRSSRSHASGRALLRASHASPSSTSVGE*SHRTPSARP 168
           PQ+   +RP +R +    SGRA   + H++ +S  +G  SH    A P
Sbjct: 29  PQVQRQLRPGERPAACPCSGRAPSASLHSAAASRDLGTASHNFSGALP 76

>YPKW_THECU (P49694) Hypothetical protein in pkwA 5'region (ORF1) (Fragment)|
          Length = 180

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +1

Query: 7   WXAS-SRPQLASSVRPQDRSS-----RSHASGRALLRASHASPSSTSVGE*SHRTPSARP 168
           W A+ SRP   S++   D+ +     R+HA+GR LL  +   P  T + E      +AR 
Sbjct: 33  WLAALSRPVPGSALADADQEAAMLLIRAHATGRPLLPETQPDPLETLL-ETDEARAAART 91

Query: 169 LWRPLPGKD 195
           L  PL G D
Sbjct: 92  LLGPLAGND 100

>PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-containing|
            protein 2) (Retinoblastoma protein-interacting
            zinc-finger protein) (Zinc finger protein RIZ)
          Length = 1706

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/62 (38%), Positives = 26/62 (41%)
 Frame = +3

Query: 369  SPTPCRLLCAPPYTFATPPGCVYPTAIDGLLHLQLDASP*CLVGSIPGSFGSVHPQLPSP 548
            SP PC     P  T ATPP  + PT    L H   DASP       P  F +   Q P P
Sbjct: 964  SPPPC----PPVLTVATPPPPLLPTV--PLSHPSSDASP----QQCPSPFSNTTAQSPLP 1013

Query: 549  AL 554
             L
Sbjct: 1014 IL 1015

>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6|
          Length = 3519

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
 Frame = -3

Query: 522  IRSSPVWIRPSIKATRRAGGAGGHQWLWGKRSPAEWRRCMVVRRGGGTGWVSGNQAGSGR 343
            +R S VW+R  ++A    GG G             WR    V   GG G   G  A + R
Sbjct: 2832 VRGSGVWVRRLVRAVVDGGGGG-------------WRPRGTVLVTGGLG---GLGAHTAR 2875

Query: 342  WRVEGRP------GRRGWSSPWA 292
            W V G         RRG S+P A
Sbjct: 2876 WLVGGGADHVVLVSRRGGSAPGA 2898



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
 Frame = -3

Query: 522  IRSSPVWIRPSIKATRRAGGAGGHQWLWGKRSPAEWRRCMVVRRGGGTGWVSGNQAGSGR 343
            +R S VW+R  ++A    GG G             WR    V   GG G   G  A + R
Sbjct: 1176 VRGSGVWVRRLVRAVVDGGGGG-------------WRPRGTVLVTGGLG---GLGAHTAR 1219

Query: 342  WRVEGRP------GRRGWSSPWA 292
            W V G         RRG S+P A
Sbjct: 1220 WLVGGGADHVVLVSRRGGSAPGA 1242

>PG20_MYCTU (O53416) Hypothetical PE-PGRS family protein PE_PGRS20|
          Length = 463

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -3

Query: 471 AGGAGGHQWLWGKRSPAEWRRCMVVRRGGGTGWVSGN--QAGSGRWRVEGRPGRRGWSSP 298
           AGGAGG     G+              GG  GW+SGN   AG+G        G  G S+ 
Sbjct: 227 AGGAGGAGGAGGRGGD-----------GGSAGWLSGNGGDAGTGGGGGNAGNGGNGGSAG 275

Query: 297 WAS 289
           W S
Sbjct: 276 WLS 278

>DED1_ASHGO (Q75B50) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 623

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 492 SIKATRRAGGAGGHQWLWGKRSPAEWRRCMVVRRGGGTGWVSGNQAGSGRW 340
           S +  RR GG GG +W    R+ + W      R G G G  SG    +  W
Sbjct: 561 STRDFRRHGGGGGSEWSSANRASSGWGN--ATRTGSGWGDSSGFGGSTESW 609

>ACA2_YEAST (P40535) ATF/CREB activator 2 (Chromosome stability protein CST6)|
          Length = 587

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 82  GRALLRASHASPSSTSVGE*SHRTPSARPLWRPLPG 189
           G++ LR SH++PS T   + SH   +A     P+PG
Sbjct: 387 GKSALRESHSNPSFTPKSQGSHLNLAANTQGNPIPG 422

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
 Frame = +2

Query: 125  LASASRAIEPHQRDLYGDHCQGRTXXXXXXXXXXXXXXXXXXXXXXXXFYPAGAMDAQGE 304
            L SA+ + EP  ++L   HC                                GAMD+Q  
Sbjct: 1802 LPSAAASAEPQSKNLDSGHCVPEPSSSGQRLYPEVFYGSAGPSSSQIS---GGAMDSQ-- 1856

Query: 305  LHPR----RPGRPSTR-HRPDPAWFPLTHPVPP 388
            LHP     RPG PS   +R  P + P   P PP
Sbjct: 1857 LHPNSGGFRPGTPSLHPYRSQPLYLP-PGPAPP 1888

>RL37A_ARCFU (O30179) 50S ribosomal protein L37Ae|
          Length = 83

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 512 PRYGSDQASRRRVELEVQE----AINGCGVNAARRSGEGVWWCXXXXXXXXXXGTKPDLV 345
           PRYG  +  R  +E+E  +        CG  A +RSG G+W C            +P   
Sbjct: 15  PRYGL-RVRRTWLEIEAVQRQKYVCKKCGKKAVKRSGTGIWECRHCGYKFAGGCYQPVTP 73

Query: 344 GGAL 333
           GG +
Sbjct: 74  GGKI 77

>FBRL_MOUSE (P35550) Fibrillarin (Nucleolar protein 1)|
          Length = 327

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 393 RGGGTGWVSGNQAGSGRWRVEGRPGRRG 310
           RGGG G   G Q+G  R R  GR G+RG
Sbjct: 58  RGGGGGRGGGFQSGGNRGRGGGRGGKRG 85

>ESPL1_MOUSE (P60330) Separin (EC 3.4.22.49) (Separase) (Caspase-like protein|
            ESPL1) (Extra spindle poles-like 1 protein)
          Length = 2118

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -2

Query: 568  SCC*QRAGEGSWGWTDP---KLPGMDPTKHQGDASSWRCRR 455
            SCC       SWGW  P    LP ++P K +    S R RR
Sbjct: 1276 SCCTSELFASSWGWHPPLVKSLPVLEPAKIRRQKCSGRGRR 1316

>BIOF_ECOLI (P12998) 8-amino-7-oxononanoate synthase (EC 2.3.1.47) (AONS)|
           (8-amino-7-ketopelargonate synthase)
           (7-keto-8-amino-pelargonic acid synthetase) (7-KAP
           synthetase) (L-alanine--pimelyl CoA ligase)
          Length = 384

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 13  ASSRPQLASSVRPQDRSSRSHASGRALLRASHASPSSTSVGE*SHRTPSARPLWRPLPGK 192
           A+++  +A+ +  +DR +    S  +LL A+  SPS       +  T  AR L  P PG+
Sbjct: 110 AANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQ 169

Query: 193 DLII 204
            +++
Sbjct: 170 QMVV 173

>RL37A_HALSA (Q9HSG8) 50S ribosomal protein L37Ae|
          Length = 95

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = -1

Query: 509 RYGSDQASRRRVE-----LEVQEAINGCGVNAARRSGEGVWWC 396
           RYG  + SRRRV      +    A   CG  A  R G G+W C
Sbjct: 16  RYG--RVSRRRVSDIEGTMNEDHACPDCGSEAVSREGTGIWQC 56

>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = -3

Query: 495  PSIKATRRAGGAGGHQWLWGKRSPAEWRRCMVVRRGGGTGWVSGNQAGSGRWRVEGRPGR 316
            P +K  R   GA G Q   G   P+E    +  +   G    +GN    G   V G PG 
Sbjct: 921  PGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGL 980

Query: 315  RG 310
            +G
Sbjct: 981  KG 982

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
 Frame = +2

Query: 125  LASASRAIEPHQRDLYGDHCQGRTXXXXXXXXXXXXXXXXXXXXXXXXFYPAGAMDAQGE 304
            L SA+ + EP  ++L   HC                                GAMD+Q  
Sbjct: 1805 LPSAAASAEPQSKNLGSGHCGPEPPSSGQRLYPEVFYGSAGPSSSQIS---GGAMDSQ-- 1859

Query: 305  LHPR----RPGRPSTR-HRPDPAWFPLTHPVPP 388
            LHP     RPG PS   +R  P + P   P PP
Sbjct: 1860 LHPNSGGFRPGTPSLHPYRSQPLYLP-PGPAPP 1891

>FBLI1_PONPY (Q5REN1) Filamin-binding LIM protein 1|
          Length = 375

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 14  RPAARSLLRPCDHRIEAPAATQAAALCSEQAMPRPLALASASR 142
           RP    L  P   R+E  A+T   A C +   PR LA+ +  R
Sbjct: 162 RPMEEELPPPPAERVEKGASTDICAFCHKTVSPRELAVEAMKR 204

>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1|
           (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220)
          Length = 1600

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = +1

Query: 25  PQLASSVRPQDRSSRSHASGRALLRASHASPSSTSVGE*SHRTPSARPLWRP 180
           PQ+A  VRP DRS  +  + R  L     SPS +     S  TPS  P+  P
Sbjct: 224 PQVAVIVRPDDRSQGAIIADRPGLPGPEHSPSESQPSSPS-PTPSPSPVLEP 274

>RHLB_XANAC (Q8PFZ3) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)|
          Length = 571

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 432 RSPAEWRRCMVVRRGGGTGWVSGNQAGSGRWRVEG 328
           R   E R     RRGGG G   G+++GSG  R +G
Sbjct: 419 REAREQRAAEEQRRGGGRGGPGGSRSGSGGGRRDG 453

>SALL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3) (MSal)|
           (Fragment)
          Length = 1323

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
 Frame = +3

Query: 321 PGVLQRATDQIRLGSRSPTPCRLLCAPPYTFATPPGCVYPTAIDGLLHLQLDAS----P* 488
           P         ++L   +P     L A P T +   G   P A DG  HL   AS    P 
Sbjct: 218 PSASAPGNTSVQLQGLTPHAALQLSAGPATASAGSGSTLPAAFDGPQHLSQPASGTSTPC 277

Query: 489 CLVGSIPGSFGSVHP 533
           C   + P   G+ HP
Sbjct: 278 CSTSAAPPDSGA-HP 291

>RL43_ASHGO (Q751L1) 60S ribosomal protein L43|
          Length = 92

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = -1

Query: 539 QLGMDRSEAPRYGSDQASRRRVE-LEVQEAI----NGCGVNAARRSGEGVWWCXXXXXXX 375
           ++G+      RYGS  + RR+V+ LEVQ+      + CG  A +R   G+W C       
Sbjct: 7   KVGITGKYGVRYGS--SLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNC------- 57

Query: 374 XXXGTKPDLVGGALKDARAVA 312
                K  + GGA   + A A
Sbjct: 58  --SSCKKTVAGGAYTFSTAAA 76

>RHAB_SALCH (Q57HG9) Rhamnulokinase (EC 2.7.1.5) (Rhamnulose kinase)|
          Length = 489

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 17  PAARSLLRPCDHRIEAPAATQAA--ALCSEQAMPRPLALASASRAIEPHQRDLYGD 178
           PA R L+ P D R   P   +A   A+C E   P P++ A  +R I      LY D
Sbjct: 326 PACRFLINPNDDRFINPDDMRAEIQAVCRETDQPVPVSDAELARCIFDSLALLYAD 381

>LTK_HUMAN (P29376) Leukocyte tyrosine kinase receptor precursor (EC 2.7.10.1)|
           (Protein tyrosine kinase 1)
          Length = 864

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 390 GGGTGWVS-GNQAGSGRWRVEGRPGRRGWSSPWASI 286
           GGG GW S      +GR   EG  G +G S  WA++
Sbjct: 272 GGGGGWTSRAPSPQAGRSLQEGAEGGQGCSEAWATL 307


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,631,737
Number of Sequences: 219361
Number of extensions: 1838073
Number of successful extensions: 7667
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 6779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7591
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)