ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd14g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 42 2.0
2emb|X69969.1|CRALDCHL C.reinhardtii mRNA for fructose-1,6-bispho... 42 2.0
3gb|S72951.1| Chlamydomonas reinhardtii fructosediphophate aldola... 42 2.0
4gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, comple... 42 2.0
5emb|X85495.1|CRALD C.reinhardtii ald gene 42 2.0
6gb|AC152418.5| Mus musculus BAC clone RP23-7L11 from chromosome ... 40 7.8
7gb|AC169984.2| Mus musculus BAC clone RP23-450I9 from chromosome... 40 7.8
8gb|BC028927.1| Mus musculus exocyst complex component 7, mRNA (c... 40 7.8
9gb|AC121894.2| Mus musculus BAC clone RP24-157H5 from 6, complet... 40 7.8
10emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chr... 40 7.8
11emb|AJ621385.1| Gallus gallus RAD50 gene (partial), IL5 gene, IR... 40 7.8
12gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 7.8
13gb|AC111149.4| Homo sapiens chromosome 8, clone RP11-434I12, com... 40 7.8
14dbj|AK140450.1| Mus musculus 10 days neonate medulla oblongata c... 40 7.8
15dbj|AK167769.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length... 40 7.8
16dbj|AK169928.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 7.8
17dbj|AK162868.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 40 7.8
18dbj|AK087601.1| Mus musculus 2 days pregnant adult female oviduc... 40 7.8
19dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
20ref|NM_016857.1| Mus musculus exocyst complex component 7 (Exoc7... 40 7.8
21dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.8
22dbj|AK173094.1| Mus musculus premature mRNA for mKIAA1067 protein 40 7.8
23gb|BC053710.1| Mus musculus exocyst complex component 7, mRNA (c... 40 7.8
24dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
25dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
26ref|XM_319833.2| Anopheles gambiae str. PEST ENSANGP00000005228 ... 40 7.8
27gb|AC150745.2| Mus musculus BAC clone RP24-77E13 from 7, complet... 40 7.8
28gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromoso... 40 7.8
29gb|AF014461.1|AF014461 Mus musculus EXO70 protein (Exo70) mRNA, ... 40 7.8
30emb|AL645861.12| Mouse DNA sequence from clone RP23-184G6 on chr... 40 7.8

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 446    cattgatggcctcctgcacctccagctcg 474
              ||||||||||| ||||||||||| |||||
Sbjct: 623682 cattgatggccgcctgcacctcctgctcg 623710



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>emb|X69969.1|CRALDCHL C.reinhardtii mRNA for fructose-1,6-bisphosphate aldolase
          Length = 1737

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 450 gatggcctcctgcacctccag 470
           |||||||||||||||||||||
Sbjct: 742 gatggcctcctgcacctccag 722



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>gb|S72951.1| Chlamydomonas reinhardtii fructosediphophate aldolase gene,
           complete cds; and unknown gene; nuclear genes for
           chloroplast products
          Length = 1717

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 450 gatggcctcctgcacctccag 470
           |||||||||||||||||||||
Sbjct: 741 gatggcctcctgcacctccag 721



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>gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, complete sequence
          Length = 167471

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 541   cctcgccagccctctgtcaac 561
             |||||||||||||||||||||
Sbjct: 22593 cctcgccagccctctgtcaac 22573



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>emb|X85495.1|CRALD C.reinhardtii ald gene
          Length = 3676

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 450  gatggcctcctgcacctccag 470
            |||||||||||||||||||||
Sbjct: 1915 gatggcctcctgcacctccag 1895



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>gb|AC152418.5| Mus musculus BAC clone RP23-7L11 from chromosome 7, complete sequence
          Length = 249571

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     ctccgagcaagccatgcctc 113
              ||||||||||||||||||||
Sbjct: 174196 ctccgagcaagccatgcctc 174215



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>gb|AC169984.2| Mus musculus BAC clone RP23-450I9 from chromosome 6, complete sequence
          Length = 181976

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 449    tgatggcctcctgcacctcc 468
              ||||||||||||||||||||
Sbjct: 107044 tgatggcctcctgcacctcc 107025



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>gb|BC028927.1| Mus musculus exocyst complex component 7, mRNA (cDNA clone
           MGC:30390 IMAGE:4208803), complete cds
          Length = 2102

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 594 cctcctgcacctccagctcg 575



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>gb|AC121894.2| Mus musculus BAC clone RP24-157H5 from 6, complete sequence
          Length = 148613

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 449  tgatggcctcctgcacctcc 468
            ||||||||||||||||||||
Sbjct: 2387 tgatggcctcctgcacctcc 2368



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>emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chromosome 10 Contains the
             5' end of the gene for protein kinase (PKE), gene
             KIAA1674, gene LOC170394, the 5' end of a novel gene and
             six CpG islands, complete sequence
          Length = 132772

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   ctgtccatccccaactgccc 542
             ||||||||||||||||||||
Sbjct: 23523 ctgtccatccccaactgccc 23504



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>emb|AJ621385.1| Gallus gallus RAD50 gene (partial), IL5 gene, IRF1 gene, OCTN2 gene and
             OCTN1 gene (partial)
          Length = 113629

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   ggcctcctgcacctccagct 472
             ||||||||||||||||||||
Sbjct: 64380 ggcctcctgcacctccagct 64399



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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 145     catcgaaccccatcagcgcg 164
               ||||||||||||||||||||
Sbjct: 3214933 catcgaaccccatcagcgcg 3214914



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>gb|AC111149.4| Homo sapiens chromosome 8, clone RP11-434I12, complete sequence
          Length = 135213

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 377   cccgtgccgcctcctctgcgcacc 400
             |||||||||||||| |||||||||
Sbjct: 98833 cccgtgccgcctccgctgcgcacc 98810



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>dbj|AK140450.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
           full-length enriched library, clone:B830030O19
           product:exocyst complex component 7, full insert
           sequence
          Length = 3313

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 592 cctcctgcacctccagctcg 573



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>dbj|AK167769.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
           clone:I730011M14 product:exocyst complex component 7,
           full insert sequence
          Length = 2083

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 601 cctcctgcacctccagctcg 582



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>dbj|AK169928.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630004J16
           product:exocyst complex component 7, full insert
           sequence
          Length = 2085

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 605 cctcctgcacctccagctcg 586



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>dbj|AK162868.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230067I15 product:exocyst
           complex component 7, full insert sequence
          Length = 3738

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 604 cctcctgcacctccagctcg 585



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>dbj|AK087601.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
           full-length enriched library, clone:E230023C22
           product:exocyst component protein 70 kDa homolog (S.
           cerevisiae), full insert sequence
          Length = 2088

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 606 cctcctgcacctccagctcg 587



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     agccatcgaaccccatcagc 161
               ||||||||||||||||||||
Sbjct: 4864558 agccatcgaaccccatcagc 4864577



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>ref|NM_016857.1| Mus musculus exocyst complex component 7 (Exoc7), mRNA
          Length = 2094

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 553 cctcctgcacctccagctcg 534



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 337     gcgccaccgaccagatccgg 356
               ||||||||||||||||||||
Sbjct: 2042544 gcgccaccgaccagatccgg 2042563



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>dbj|AK173094.1| Mus musculus premature mRNA for mKIAA1067 protein
          Length = 6719

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 594 cctcctgcacctccagctcg 575



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>gb|BC053710.1| Mus musculus exocyst complex component 7, mRNA (cDNA clone
           MGC:60517 IMAGE:30056570), complete cds
          Length = 2111

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 605 cctcctgcacctccagctcg 586



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>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1122_A12
          Length = 149011

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   agccatcgaaccccatcagc 161
             ||||||||||||||||||||
Sbjct: 23812 agccatcgaaccccatcagc 23831



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>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056D04
          Length = 158118

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   agccatcgaaccccatcagc 161
             ||||||||||||||||||||
Sbjct: 69352 agccatcgaaccccatcagc 69371



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>ref|XM_319833.2| Anopheles gambiae str. PEST ENSANGP00000005228
           (ENSANGG00000004028), partial mRNA
          Length = 660

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 456 ctcctgcacctccagctcga 475
           ||||||||||||||||||||
Sbjct: 483 ctcctgcacctccagctcga 464



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>gb|AC150745.2| Mus musculus BAC clone RP24-77E13 from 7, complete sequence
          Length = 232607

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     ctccgagcaagccatgcctc 113
              ||||||||||||||||||||
Sbjct: 163469 ctccgagcaagccatgcctc 163450



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>gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromosome unknown, complete
              sequence
          Length = 211288

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    ggcctcctgcacctccagct 472
              ||||||||||||||||||||
Sbjct: 197354 ggcctcctgcacctccagct 197373



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>gb|AF014461.1|AF014461 Mus musculus EXO70 protein (Exo70) mRNA, complete cds
          Length = 2094

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 cctcctgcacctccagctcg 474
           ||||||||||||||||||||
Sbjct: 553 cctcctgcacctccagctcg 534



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>emb|AL645861.12| Mouse DNA sequence from clone RP23-184G6 on chromosome 11, complete
             sequence
          Length = 212385

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 455   cctcctgcacctccagctcg 474
             ||||||||||||||||||||
Sbjct: 49186 cctcctgcacctccagctcg 49205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,603,099
Number of Sequences: 3902068
Number of extensions: 2603099
Number of successful extensions: 42669
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42512
Number of HSP's gapped (non-prelim): 157
length of query: 572
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 549
effective length of database: 17,143,297,704
effective search space: 9411670439496
effective search space used: 9411670439496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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