ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd14f21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
2dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
3dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
4dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
6emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 147 5e-32
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
8dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
9dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
10tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 96 2e-16
11ref|XM_481332.1| Oryza sativa (japonica cultivar-group), mRNA 88 4e-14
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
13dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
14dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
15ref|NM_191315.1| Oryza sativa (japonica cultivar-group), predic... 48 0.032
16dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.032
17dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.032
18dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.032
19dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.032
20gb|BT016213.1| Zea mays clone Contig46 mRNA sequence 44 0.50
21gb|AC119410.20| Medicago truncatula clone mth2-13n10, complete s... 44 0.50
22gb|AY107285.1| Zea mays PCO110539 mRNA sequence 44 0.50
23gb|BT018920.1| Zea mays clone Contig21.F mRNA sequence 42 2.0
24gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 7.9
25gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 7.9
26gb|AC126276.3| Mus musculus BAC clone RP23-113J19 from 10, compl... 40 7.9
27gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome 40 7.9
28gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.9
29emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 40 7.9
30ref|XM_967312.1| PREDICTED: Tribolium castaneum similar to GRIP ... 40 7.9
31ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG109... 40 7.9
32emb|BX927386.11| Zebrafish DNA sequence from clone CH211-54F10 i... 40 7.9
33gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome... 40 7.9
34dbj|AB236766.1| Trifolium pratense RNA for putative DEAD-box pro... 40 7.9
35gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, comp... 40 7.9
36gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, com... 40 7.9
37gb|AC079794.6| Homo sapiens BAC clone RP11-588F18 from 4, comple... 40 7.9
38dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.9
39dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
40dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
41dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
42gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 7.9
43emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chro... 40 7.9
44gb|AY068554.1| Schmidtea mediterranea clone H.62.4a(T3) unknown ... 40 7.9 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  196 bits (99), Expect = 6e-47
 Identities = 216/255 (84%)
 Strand = Plus / Minus

                                                                            
Query: 35       cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 94
                |||||| ||||| |||||||| |||||||||||||||  | |||| ||||||||| ||||
Sbjct: 20143214 cttcgacctgtcggggctgttcgaggagcgcggcgagaggatgcgcttcgtgtccggcgc 20143155

                                                                            
Query: 95       gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 154
                |||||||  |  ||| ||| |||||||| |||||||||| |||  ||| |||||||||||
Sbjct: 20143154 gccggtggccgacattatcgccaagctgcaggagatcgccgggatggtgagcttcacggc 20143095

                                                                            
Query: 155      gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 214
                ||| |||||||| ||||| |||||| ||||||||||  | || ||||| ||||| |||||
Sbjct: 20143094 gcggaccaaggactgccaggtgagcatcgaggcgacgcggaacgggcagaagggcgcgct 20143035

                                                                            
Query: 215      ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggtatgcaa 274
                 ||||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 20143034 cgccatctccgccaaggtgttcgagctcacgcgggagctcgtcatggtccaggtgtgcaa 20142975

                               
Query: 275      gaaagccggagacac 289
                ||| ||||| |||||
Sbjct: 20142974 gaaggccggcgacac 20142960



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 394      gaaattttagagaatttatt 413
                ||||||||||||||||||||
Sbjct: 28829834 gaaattttagagaatttatt 28829815
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>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0007G12
          Length = 111819

 Score =  196 bits (99), Expect = 6e-47
 Identities = 216/255 (84%)
 Strand = Plus / Minus

                                                                        
Query: 35   cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 94
            |||||| ||||| |||||||| |||||||||||||||  | |||| ||||||||| ||||
Sbjct: 9214 cttcgacctgtcggggctgttcgaggagcgcggcgagaggatgcgcttcgtgtccggcgc 9155

                                                                        
Query: 95   gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 154
            |||||||  |  ||| ||| |||||||| |||||||||| |||  ||| |||||||||||
Sbjct: 9154 gccggtggccgacattatcgccaagctgcaggagatcgccgggatggtgagcttcacggc 9095

                                                                        
Query: 155  gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 214
            ||| |||||||| ||||| |||||| ||||||||||  | || ||||| ||||| |||||
Sbjct: 9094 gcggaccaaggactgccaggtgagcatcgaggcgacgcggaacgggcagaagggcgcgct 9035

                                                                        
Query: 215  ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggtatgcaa 274
             ||||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 9034 cgccatctccgccaaggtgttcgagctcacgcgggagctcgtcatggtccaggtgtgcaa 8975

                           
Query: 275  gaaagccggagacac 289
            ||| ||||| |||||
Sbjct: 8974 gaaggccggcgacac 8960
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>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1068H08
          Length = 152794

 Score =  196 bits (99), Expect = 6e-47
 Identities = 216/255 (84%)
 Strand = Plus / Minus

                                                                          
Query: 35     cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 94
              |||||| ||||| |||||||| |||||||||||||||  | |||| ||||||||| ||||
Sbjct: 131488 cttcgacctgtcggggctgttcgaggagcgcggcgagaggatgcgcttcgtgtccggcgc 131429

                                                                          
Query: 95     gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 154
              |||||||  |  ||| ||| |||||||| |||||||||| |||  ||| |||||||||||
Sbjct: 131428 gccggtggccgacattatcgccaagctgcaggagatcgccgggatggtgagcttcacggc 131369

                                                                          
Query: 155    gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 214
              ||| |||||||| ||||| |||||| ||||||||||  | || ||||| ||||| |||||
Sbjct: 131368 gcggaccaaggactgccaggtgagcatcgaggcgacgcggaacgggcagaagggcgcgct 131309

                                                                          
Query: 215    ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggtatgcaa 274
               ||||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 131308 cgccatctccgccaaggtgttcgagctcacgcgggagctcgtcatggtccaggtgtgcaa 131249

                             
Query: 275    gaaagccggagacac 289
              ||| ||||| |||||
Sbjct: 131248 gaaggccggcgacac 131234
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>dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full
            insert sequence
          Length = 1884

 Score =  196 bits (99), Expect = 6e-47
 Identities = 216/255 (84%)
 Strand = Plus / Plus

                                                                        
Query: 35   cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 94
            |||||| ||||| |||||||| |||||||||||||||  | |||| ||||||||| ||||
Sbjct: 1238 cttcgacctgtcggggctgttcgaggagcgcggcgagaggatgcgcttcgtgtccggcgc 1297

                                                                        
Query: 95   gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 154
            |||||||  |  ||| ||| |||||||| |||||||||| |||  ||| |||||||||||
Sbjct: 1298 gccggtggccgacattatcgccaagctgcaggagatcgccgggatggtgagcttcacggc 1357

                                                                        
Query: 155  gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 214
            ||| |||||||| ||||| |||||| ||||||||||  | || ||||| ||||| |||||
Sbjct: 1358 gcggaccaaggactgccaggtgagcatcgaggcgacgcggaacgggcagaagggcgcgct 1417

                                                                        
Query: 215  ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggtatgcaa 274
             ||||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||| |||||
Sbjct: 1418 cgccatctccgccaaggtgttcgagctcacgcgggagctcgtcatggtccaggtgtgcaa 1477

                           
Query: 275  gaaagccggagacac 289
            ||| ||||| |||||
Sbjct: 1478 gaaggccggcgacac 1492
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  147 bits (74), Expect = 5e-32
 Identities = 194/234 (82%)
 Strand = Plus / Minus

                                                                           
Query: 35      cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 94
               |||||| ||||||||||||||  ||||||||||||||  | |||| ||||||||| ||||
Sbjct: 5628099 cttcgacctgtccgggctgttccaggagcgcggcgagaggatgcgcttcgtgtccggcgc 5628040

                                                                           
Query: 95      gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 154
               | |||||  |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||
Sbjct: 5628039 gtcggtggccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggc 5627980

                                                                           
Query: 155     gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 214
               ||| |||||||| ||||| |||||| ||||||||||    || ||||| ||||| |||||
Sbjct: 5627979 gcggaccaaggactgccaggtgagcatcgaggcgacgcagaacgggcagaagggcgcgct 5627920

                                                                     
Query: 215     ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggt 268
                ||||| ||| ||||| | ||| ||||||||  |||||||||||||||||||||
Sbjct: 5627919 cgccatctccgccaaggtgttcgagctcacgtgggagctcgtcatggtccaggt 5627866
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>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score =  147 bits (74), Expect = 5e-32
 Identities = 194/234 (82%)
 Strand = Plus / Minus

                                                                         
Query: 35    cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 94
             |||||| ||||||||||||||  ||||||||||||||  | |||| ||||||||| ||||
Sbjct: 85306 cttcgacctgtccgggctgttccaggagcgcggcgagaggatgcgcttcgtgtccggcgc 85247

                                                                         
Query: 95    gccggtgaacaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggc 154
             | |||||  |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||
Sbjct: 85246 gtcggtggccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggc 85187

                                                                         
Query: 155   gcgcaccaaggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgct 214
             ||| |||||||| ||||| |||||| ||||||||||    || ||||| ||||| |||||
Sbjct: 85186 gcggaccaaggactgccaggtgagcatcgaggcgacgcagaacgggcagaagggcgcgct 85127

                                                                   
Query: 215   ggccatatccaccaagatattccagctcacgccggagctcgtcatggtccaggt 268
              ||||| ||| ||||| | ||| ||||||||  |||||||||||||||||||||
Sbjct: 85126 cgccatctccgccaaggtgttcgagctcacgtgggagctcgtcatggtccaggt 85073
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 180/224 (80%)
 Strand = Plus / Minus

                                                                            
Query: 43       tgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgcgccggtga 102
                |||||||||||||  ||||||| ||||||  | |||| ||||||||| ||||| ||||| 
Sbjct: 12496295 tgtccgggctgttccaggagcgtggcgagaggatgcgcttcgtgtccggcgcgtcggtgg 12496236

                                                                            
Query: 103      acaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggcgcgcacca 162
                 |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||| | ||||
Sbjct: 12496235 ccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggcgtggacca 12496176

                                                                            
Query: 163      aggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatat 222
                |||| ||||| |||||| ||||||||||  | || || || ||| | ||||| ||||| |
Sbjct: 12496175 aggactgccaggtgagcatcgaggcgacgcggaacggacagaagagcgcgctcgccatct 12496116

                                                            
Query: 223      ccaccaagatattccagctcacgccggagctcgtcatggtccag 266
                || ||||| | ||| |||||||    ||||||||||||||||||
Sbjct: 12496115 ccgccaaggtgttcgagctcacatgtgagctcgtcatggtccag 12496072



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 112      tctccaagctggaggagatcgcgg 135
                ||||||||||||||||||||||||
Sbjct: 31932206 tctccaagctggaggagatcgcgg 31932183
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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0537A05
          Length = 152396

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 180/224 (80%)
 Strand = Plus / Minus

                                                                        
Query: 43   tgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgcgccggtga 102
            |||||||||||||  ||||||| ||||||  | |||| ||||||||| ||||| ||||| 
Sbjct: 7905 tgtccgggctgttccaggagcgtggcgagaggatgcgcttcgtgtccggcgcgtcggtgg 7846

                                                                        
Query: 103  acaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggcgcgcacca 162
             |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||| | ||||
Sbjct: 7845 ccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggcgtggacca 7786

                                                                        
Query: 163  aggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatat 222
            |||| ||||| |||||| ||||||||||  | || || || ||| | ||||| ||||| |
Sbjct: 7785 aggactgccaggtgagcatcgaggcgacgcggaacggacagaagagcgcgctcgccatct 7726

                                                        
Query: 223  ccaccaagatattccagctcacgccggagctcgtcatggtccag 266
            || ||||| | ||| |||||||    ||||||||||||||||||
Sbjct: 7725 ccgccaaggtgttcgagctcacatgtgagctcgtcatggtccag 7682
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>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1135C02
          Length = 152306

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 180/224 (80%)
 Strand = Plus / Minus

                                                                         
Query: 43    tgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgcgccggtga 102
             |||||||||||||  ||||||| ||||||  | |||| ||||||||| ||||| ||||| 
Sbjct: 81910 tgtccgggctgttccaggagcgtggcgagaggatgcgcttcgtgtccggcgcgtcggtgg 81851

                                                                         
Query: 103   acaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggcgcgcacca 162
              |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||| | ||||
Sbjct: 81850 ccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggcgtggacca 81791

                                                                         
Query: 163   aggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatat 222
             |||| ||||| |||||| ||||||||||  | || || || ||| | ||||| ||||| |
Sbjct: 81790 aggactgccaggtgagcatcgaggcgacgcggaacggacagaagagcgcgctcgccatct 81731

                                                         
Query: 223   ccaccaagatattccagctcacgccggagctcgtcatggtccag 266
             || ||||| | ||| |||||||    ||||||||||||||||||
Sbjct: 81730 ccgccaaggtgttcgagctcacatgtgagctcgtcatggtccag 81687
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>tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx13 gene for
            class III peroxidase 13 precursor, exons 1-3
          Length = 9315

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 180/224 (80%)
 Strand = Plus / Minus

                                                                        
Query: 43   tgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgcgccggtga 102
            |||||||||||||  ||||||| ||||||  | |||| ||||||||| ||||| ||||| 
Sbjct: 3794 tgtccgggctgttccaggagcgtggcgagaggatgcgcttcgtgtccggcgcgtcggtgg 3735

                                                                        
Query: 103  acaccatcatctccaagctggaggagatcgcggggcaggttagcttcacggcgcgcacca 162
             |  ||||||| ||||||| ||||||||||| ||   ||| ||||||| |||| | ||||
Sbjct: 3734 ccgacatcatcgccaagctagaggagatcgccggcatggtgagcttcatggcgtggacca 3675

                                                                        
Query: 163  aggattgccaagtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatat 222
            |||| ||||| |||||| ||||||||||  | || || || ||| | ||||| ||||| |
Sbjct: 3674 aggactgccaggtgagcatcgaggcgacgcggaacggacagaagagcgcgctcgccatct 3615

                                                        
Query: 223  ccaccaagatattccagctcacgccggagctcgtcatggtccag 266
            || ||||| | ||| |||||||    ||||||||||||||||||
Sbjct: 3614 ccgccaaggtgttcgagctcacatgtgagctcgtcatggtccag 3571
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>ref|XM_481332.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 768

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                       
Query: 174 gtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatatccaccaagata 233
           |||||| ||||||||||  | || ||||| ||||| || || ||||| ||| ||||| | 
Sbjct: 514 gtgagcatcgaggcgacgcggaacgggcataagggcgcactcgccatctcctccaaggtg 573

                                                                   
Query: 234 ttccagctcacgccggagctcgtcatggtccaggtatgcaagaaagccggagacac 289
           ||| ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 574 ttcgagctcacgcgggagctcgtcatggtccaggtgtgcaagaaggccggcgacac 629



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 107 catcatctccaagctggaggagatcgc 133
           ||||||| |||||||||||||||||||
Sbjct: 480 catcatcgccaagctggaggagatcgc 506
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                            
Query: 174      gtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatatccaccaagata 233
                |||||| ||||||||||  | || ||||| ||||| || || ||||| ||| ||||| | 
Sbjct: 11596150 gtgagcatcgaggcgacgcggaacgggcataagggcgcactcgccatctcctccaaggtg 11596209

                                                                        
Query: 234      ttccagctcacgccggagctcgtcatggtccaggtatgcaagaaagccggagacac 289
                ||| ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 11596210 ttcgagctcacgcgggagctcgtcatggtccaggtgtgcaagaaggccggcgacac 11596265



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                            
Query: 35       cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 94
                |||||| ||||| | ||||||||||||||||||||||  | |||  ||| ||||| ||||
Sbjct: 11596044 cttcgacctgtctgagctgtttgaggagcgcggcgagaggatgcacttcatgtccggcgc 11596103

                                                       
Query: 95       gccggtgaacaccatcatctccaagctggaggagatcgc 133
                || ||||  |  ||||||| |||||||||||||||||||
Sbjct: 11596104 gctggtggccgacatcatcgccaagctggaggagatcgc 11596142
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>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1034_C08
          Length = 154441

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                          
Query: 174    gtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatatccaccaagata 233
              |||||| ||||||||||  | || ||||| ||||| || || ||||| ||| ||||| | 
Sbjct: 150284 gtgagcatcgaggcgacgcggaacgggcataagggcgcactcgccatctcctccaaggtg 150343

                                                                      
Query: 234    ttccagctcacgccggagctcgtcatggtccaggtatgcaagaaagccggagacac 289
              ||| ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 150344 ttcgagctcacgcgggagctcgtcatggtccaggtgtgcaagaaggccggcgacac 150399



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                          
Query: 35     cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 94
              |||||| ||||| | ||||||||||||||||||||||  | |||  ||| ||||| ||||
Sbjct: 150178 cttcgacctgtctgagctgtttgaggagcgcggcgagaggatgcacttcatgtccggcgc 150237

                                                     
Query: 95     gccggtgaacaccatcatctccaagctggaggagatcgc 133
              || ||||  |  ||||||| |||||||||||||||||||
Sbjct: 150238 gctggtggccgacatcatcgccaagctggaggagatcgc 150276
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>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0467G09
          Length = 158204

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                         
Query: 174   gtgagcttcgaggcgacaagaaatgggcacaagggagcgctggccatatccaccaagata 233
             |||||| ||||||||||  | || ||||| ||||| || || ||||| ||| ||||| | 
Sbjct: 56421 gtgagcatcgaggcgacgcggaacgggcataagggcgcactcgccatctcctccaaggtg 56480

                                                                     
Query: 234   ttccagctcacgccggagctcgtcatggtccaggtatgcaagaaagccggagacac 289
             ||| ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 56481 ttcgagctcacgcgggagctcgtcatggtccaggtgtgcaagaaggccggcgacac 56536



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                         
Query: 35    cttcgatctgtccgggctgtttgaggagcgcggcgagcagttgcgtttcgtgtccagcgc 94
             |||||| ||||| | ||||||||||||||||||||||  | |||  ||| ||||| ||||
Sbjct: 56315 cttcgacctgtctgagctgtttgaggagcgcggcgagaggatgcacttcatgtccggcgc 56374

                                                    
Query: 95    gccggtgaacaccatcatctccaagctggaggagatcgc 133
             || ||||  |  ||||||| |||||||||||||||||||
Sbjct: 56375 gctggtggccgacatcatcgccaagctggaggagatcgc 56413
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>ref|NM_191315.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1425

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 112  tctccaagctggaggagatcgcgg 135
            ||||||||||||||||||||||||
Sbjct: 1112 tctccaagctggaggagatcgcgg 1135
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>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1131G08
          Length = 158241

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 112    tctccaagctggaggagatcgcgg 135
              ||||||||||||||||||||||||
Sbjct: 118284 tctccaagctggaggagatcgcgg 118261
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>dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040M01, full
            insert sequence
          Length = 1628

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 112  tctccaagctggaggagatcgcgg 135
            ||||||||||||||||||||||||
Sbjct: 1238 tctccaagctggaggagatcgcgg 1261
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>dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013G02, full
            insert sequence
          Length = 1690

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 112  tctccaagctggaggagatcgcgg 135
            ||||||||||||||||||||||||
Sbjct: 1230 tctccaagctggaggagatcgcgg 1253
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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460E08
          Length = 170021

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 112   tctccaagctggaggagatcgcgg 135
             ||||||||||||||||||||||||
Sbjct: 28933 tctccaagctggaggagatcgcgg 28910
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>gb|BT016213.1| Zea mays clone Contig46 mRNA sequence
          Length = 1260

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 3    tcggcacgagggaactagtctc 24
            ||||||||||||||||||||||
Sbjct: 1256 tcggcacgagggaactagtctc 1235
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>gb|AC119410.20| Medicago truncatula clone mth2-13n10, complete sequence
          Length = 108232

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 409   ttattgtggggtgaaaagcagcaggg 434
             ||||||||||||||||||||| ||||
Sbjct: 39753 ttattgtggggtgaaaagcagtaggg 39728
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>gb|AY107285.1| Zea mays PCO110539 mRNA sequence
          Length = 1022

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1    attcggcacgagggaactagtctcc 25
            ||||||||||||| |||||||||||
Sbjct: 1005 attcggcacgaggnaactagtctcc 981
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>gb|BT018920.1| Zea mays clone Contig21.F mRNA sequence
          Length = 931

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 4  cggcacgagggaactagtctc 24
          |||||||||||||||||||||
Sbjct: 1  cggcacgagggaactagtctc 21
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     gagcgcggcgagcagttgcg 79
              ||||||||||||||||||||
Sbjct: 776868 gagcgcggcgagcagttgcg 776887
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      cgcgccggtgaacaccatca 111
               ||||||||||||||||||||
Sbjct: 1456482 cgcgccggtgaacaccatca 1456463
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>gb|AC126276.3| Mus musculus BAC clone RP23-113J19 from 10, complete sequence
          Length = 195021

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   cttgaaattttagagaattt 410
             ||||||||||||||||||||
Sbjct: 58606 cttgaaattttagagaattt 58625
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>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   gccaagtgagcttcgaggcg 188
             ||||||||||||||||||||
Sbjct: 53663 gccaagtgagcttcgaggcg 53644
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 342     ctcgtggatggcctgcctga 361
               ||||||||||||||||||||
Sbjct: 5067950 ctcgtggatggcctgcctga 5067969
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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    aaattttagagaatttattg 414
              ||||||||||||||||||||
Sbjct: 722790 aaattttagagaatttattg 722771
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>ref|XM_967312.1| PREDICTED: Tribolium castaneum similar to GRIP and coiled-coil
            domain-containing 2 (LOC661131), mRNA
          Length = 3972

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  tcatctccaagctggaggag 128
            ||||||||||||||||||||
Sbjct: 1310 tcatctccaagctggaggag 1329
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>ref|XM_966724.1| PREDICTED: Tribolium castaneum similar to CG10958-PA (LOC660497),
           mRNA
          Length = 2451

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 ttccagctcacgccggagctcgtc 257
           ||||||||||||| ||||||||||
Sbjct: 885 ttccagctcacgctggagctcgtc 862
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>emb|BX927386.11| Zebrafish DNA sequence from clone CH211-54F10 in linkage group 1,
             complete sequence
          Length = 80968

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   acaccatcatctccaagctg 122
             ||||||||||||||||||||
Sbjct: 33768 acaccatcatctccaagctg 33787
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>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence
          Length = 204309

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   cttgaaattttagagaattt 410
             ||||||||||||||||||||
Sbjct: 21886 cttgaaattttagagaattt 21867
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>dbj|AB236766.1| Trifolium pratense RNA for putative DEAD-box protein abstrakt,
            complete cds, clone: C1562
          Length = 2301

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    ggcacgagggaactagtctc 24
            ||||||||||||||||||||
Sbjct: 2301 ggcacgagggaactagtctc 2282
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>gb|AC026439.4| Homo sapiens chromosome 5 clone CTD-2267H19, complete sequence
          Length = 105081

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 392  ttgaaattttagagaattta 411
            ||||||||||||||||||||
Sbjct: 4865 ttgaaattttagagaattta 4884
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>gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, complete sequence
          Length = 126189

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   ttgaaattttagagaattta 411
             ||||||||||||||||||||
Sbjct: 44204 ttgaaattttagagaattta 44185
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>gb|AC079794.6| Homo sapiens BAC clone RP11-588F18 from 4, complete sequence
          Length = 49580

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 347   ggatggcctgcctgaggatggcct 370
             |||||||||||| |||||||||||
Sbjct: 33736 ggatggcctgccggaggatggcct 33759



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 347   ggatggcctgcctgaggatggcct 370
             |||||||||||| |||||||||||
Sbjct: 33706 ggatggcctgccggaggatggcct 33729



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 347   ggatggcctgcctgaggatggcct 370
             |||||||||||| |||||||||||
Sbjct: 33691 ggatggcctgccggaggatggcct 33714
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   cagctcacgccggagctcgt 256
             ||||||||||||||||||||
Sbjct: 76712 cagctcacgccggagctcgt 76693
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0028E05
          Length = 157631

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 394    gaaattttagagaatttatt 413
              ||||||||||||||||||||
Sbjct: 137609 gaaattttagagaatttatt 137590
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>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0545E05
          Length = 163229

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 394  gaaattttagagaatttatt 413
            ||||||||||||||||||||
Sbjct: 4920 gaaattttagagaatttatt 4901
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>dbj|AK110479.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-A03, full
            insert sequence
          Length = 3296

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   tgaggagcgcggcgagcagt 75
            ||||||||||||||||||||
Sbjct: 1330 tgaggagcgcggcgagcagt 1349
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 259     tggtccaggtatgcaagaaa 278
               ||||||||||||||||||||
Sbjct: 2890592 tggtccaggtatgcaagaaa 2890611
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>emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chromosome X, complete
             sequence
          Length = 38266

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   agaaatgggcacaagggagc 211
             ||||||||||||||||||||
Sbjct: 14029 agaaatgggcacaagggagc 14048
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>gb|AY068554.1| Schmidtea mediterranea clone H.62.4a(T3) unknown mRNA sequence
          Length = 721

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 6  gcacgagggaactagtctcc 25
          ||||||||||||||||||||
Sbjct: 1  gcacgagggaactagtctcc 20


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,103,901
Number of Sequences: 3902068
Number of extensions: 4103901
Number of successful extensions: 86974
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86597
Number of HSP's gapped (non-prelim): 368
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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