>TSR1_YEAST (Q07381) Ribosome biogenesis protein TSR1 (20S rRNA accumulation|
           protein 1)
          Length = 788

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 20/188 (10%)
 Frame = +3

Query: 60  SXHWRNQRPYVMSE-----EACIKPGDSMGLCTLLVSGYLRAHNLSVNQLVHVSGAGDFQ 224
           S +WR+ R YV+++     E     GD      L++ G +R    + N+LVH+   GDFQ
Sbjct: 249 SINWRDNRGYVVADFVDFVETSPDSGD------LVIEGTVRGIGFNANRLVHIPDFGDFQ 302

Query: 225 LGQIDILKDPCPVSERKNSDVMDSDDNQIQI---IDTFVPDPLNQEPLLVENIPDPLAGE 395
           L +I+ + +    S +K   + +   + + +   + T     +N++ L  E  P+   G 
Sbjct: 303 LNKIEKISE----SSQKRKIIKEKATDSLSLELDLQTVFESNMNRDTL-DEYAPE---GT 354

Query: 396 QTWP------------TEAEMEEAYESNKQRRVVKRKLPRGTSEYQAAWIVDDTDGEGDD 539
           + W             T    +  +   +++   K  +P+GTS+YQA W +DD     ++
Sbjct: 355 EDWSDYDEDFEYDGLTTARYDDHGFLPGREQTSKKAAVPKGTSDYQAKWYLDDVIDANEE 414

Query: 540 SENDNPDG 563
            E +  +G
Sbjct: 415 EEAEQTNG 422

>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
 Frame = +3

Query: 69  WRNQRPYVMSE--EACIKPGDSMG--LCTLLVS--GYLRAHNLSVNQLVHVSGAGDFQLG 230
           W+   PY++++  E    P D      C   VS  GYLR  +L     +H+ G GDF + 
Sbjct: 249 WQTSHPYILADRMEDLTNPEDIRTNIKCDRKVSLYGYLRGAHLKNKSQIHMPGVGDFAVS 308

Query: 231 QIDILKDPCPVSERKNSDVMDSDDNQI 311
            I  L DPC + E++    ++  +  +
Sbjct: 309 DISFLPDPCALPEQQKKRCLNEKEKLV 335

>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog|
          Length = 1121

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
 Frame = +3

Query: 69  WRNQRPYVMSEE-------ACIKPGDSMGLCTLLVSGYLRAHNLSVNQL-VHVSGAGDFQ 224
           WRNQ PY++++          I+    +G   + + GYL   NL  +   VH+ G GDF 
Sbjct: 241 WRNQHPYLLADRMEDLTLPVDIEQNPKVGR-KITLYGYLHGTNLPKHDASVHIPGVGDFV 299

Query: 225 LGQIDILKDPCP 260
              +  L+DPCP
Sbjct: 300 TSDVSSLEDPCP 311

>BMS1_YEAST (Q08965) Ribosome biogenesis protein BMS1|
          Length = 1183

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
 Frame = +3

Query: 69  WRNQRPYVMSEEACIKPG----DSMGLCT---LLVSGYLRAHNL--SVNQLVHVSGAGDF 221
           WRN+ PY++++           ++ GL     + + GYL    L  +    VH++G GDF
Sbjct: 237 WRNEHPYMLADRFTDLTHPELIETQGLQIDRKVAIYGYLHGTPLPSAPGTRVHIAGVGDF 296

Query: 222 QLGQIDILKDPCP 260
            + QI+ L DPCP
Sbjct: 297 SVAQIEKLPDPCP 309

>UTP18_YEAST (P40362) U3 small nucleolar RNA-associated protein 18 (U3|
           snoRNA-associated protein 18)
          Length = 594

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
 Frame = +3

Query: 264 SERKNSDVMDSDDNQIQIIDTFVPDPLN-----------QEPLLVENIPDPLAGEQTWPT 410
           S+ KN D MD DD      D +  D              + P+LV N    L   +T   
Sbjct: 95  SQDKNEDTMDVDDEDDSSSDDYSEDSEEAAWIDSDDEKIKVPILVTNKTKKL---RTSYN 151

Query: 411 EAEMEEAYESNKQRRVVKRKLPRGTSEYQAAWIVDDTDGEGDDSENDNPDGAGMV 575
           E+++   +  N+ R   ++  PR        W+ D++D E DD E+D  +G+  V
Sbjct: 152 ESKINGVHYINRLRSQFEKIYPR------PKWVDDESDSELDDEEDDEEEGSNNV 200

>Y1053_ARCFU (O29209) Hypothetical protein AF1053|
          Length = 269

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 306 QIQIIDTFVPDPLNQEPLLVENIPDPLAGEQTWP-TEAEMEEAYESNKQRRVVKRKLPRG 482
           QIQ++   +P+P   EP + +  P+   G +  P  E E++E  E       V R+L   
Sbjct: 77  QIQVVPAQIPEPPKPEPEVEQ--PETETGPEPEPEAEPELKEVKEDEPPEEDVVRELDES 134

Query: 483 TSEYQAAWIVDDTDGEGD 536
            S      ++++ D EGD
Sbjct: 135 KSAEPIPEVMEEVDLEGD 152

>CRTC1_ARATH (O04151) Calreticulin-1 precursor|
          Length = 425

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 393 EQTWPTEAEMEEAYESNKQRRVVKRKLPRGTSEYQAAWIVDDTDGEGDDSENDN 554
           E+TW    + E+A     +++  + +     +E  A    +D D EGDDS+N++
Sbjct: 348 EETWGKHKDAEKAAFDEAEKKREEEESKDAPAESDAEEEAEDDDNEGDDSDNES 401

>YDHS_ECOLI (P77148) Hypothetical protein ydhS|
          Length = 534

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 28/104 (26%), Positives = 48/104 (46%)
 Frame = +3

Query: 126 SMGLCTLLVSGYLRAHNLSVNQLVHVSGAGDFQLGQIDILKDPCPVSERKNSDVMDSDDN 305
           S GL  + +  Y    + S+ +L+ +  AG   +  I  L +   +   ++  V+ ++DN
Sbjct: 376 SKGLARVFIDNYAAIPSESIRRLLALREAG---IIHILALGEDYKMEINESRTVLKTEDN 432

Query: 306 QIQIIDTFVPDPLNQEPLLVENIPDPLAGEQTWPTEAEMEEAYE 437
                D F+ D   Q PL V++IP P   EQ   T  E+ +  E
Sbjct: 433 SYSF-DVFI-DARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGE 474

>ATG18_ASHGO (Q75F47) Autophagy-related protein 18|
          Length = 537

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 417 EMEEAYESNKQRRVVKRKLPRGTSEYQAAWIVDDTDGEGDDSENDNPDGAG 569
           E   A  SNK   + K   P   +   AA   DD +GE D  +  + DG G
Sbjct: 317 EFLAASSSNKTVHIFKLGKPNAENSSAAATNSDDDEGEADSDDGADDDGVG 367

>BTBDC_HUMAN (Q8IY92) BTB/POZ domain-containing protein 12|
          Length = 1151

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
 Frame = +3

Query: 87  YVMSEEACIKPGDSMGLCTLLVSGYLRAHNLSVNQLVHVSGAGDFQLGQIDILKDP--CP 260
           Y+ + +  + PG S  L +L       AH   V++LVH+         Q+ I  D    P
Sbjct: 71  YLYTADTGLPPGLSSELSSL-------AHRFGVSELVHLCE-------QVPIATDSEGKP 116

Query: 261 VSERKNSDVMDSDDNQIQIIDTFVPDPLNQEPLLVENIPDPLAGEQTWPTEAEMEEAYE- 437
             E++  +     +N  +++ +   D   +   L+++       E     EAEMEE YE 
Sbjct: 117 WEEKEAENCESRAENFQELLRSMWADEEEEAETLLKSKDHEEDQENV--NEAEMEEIYEF 174

Query: 438 SNKQRRVVKRKLPRGTSEYQAAWI 509
           +  QR++++ +   G  E  A W+
Sbjct: 175 AATQRKLLQEERAAGAGE-DADWL 197

>LIN3_CAEEL (Q03345) Protein lin-3 precursor (Abnormal cell lineage protein 3)|
           (Lethal protein 94)
          Length = 438

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +3

Query: 267 ERKNSDVMDSDDNQIQIIDTFVPDPLNQEPLLVENIPDPLAGEQT--WPTEAEMEEAYES 440
           ER   + + S +N  +   +  PD  ++  L    I D  +   T   PTE  + EA + 
Sbjct: 31  ERSAPEQLQSAENAAENSGSVPPDT-SRNSLETNEIGDAPSSTSTPETPTETTISEAGDD 89

Query: 441 NKQRRVVKRKLPRGTSEYQAAWIVDDTDGEGDDSENDNPD 560
            K+   V ++L    +EY+  +  +  D E +++   N D
Sbjct: 90  EKRTEEVAKELIEKEAEYEGEYEDEKVDEEVEEALKYNED 129

>SPB4_CRYNE (Q5KCY8) ATP-dependent rRNA helicase SPB4 (EC 3.6.1.-)|
          Length = 748

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 411 EAEMEEAYESNKQRRVVK-RKLPRGTSEYQAAWIVDDTDGEGD 536
           +AEM EA+   K+R+V K  +  +  ++ +  W ++  +GEGD
Sbjct: 637 KAEMREAWSEQKERKVRKEERKEKKDAKKKYEWELEQANGEGD 679

>LRCH4_MOUSE (Q921G6) Leucine-rich repeats and calponin homology|
           domain-containing protein 4
          Length = 680

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +3

Query: 237 DILKDPCPVSERKNSDVMDSDDNQIQIIDTFVPDPLNQEPLLVENIPDPL---AGEQTWP 407
           ++ +DP    + +     D D  QI  ID+ VP          E +P  L   AG+   P
Sbjct: 330 ELARDPRGPRQPREDGAGDGDLEQIDFIDSHVPGEDEDRSAAEEQLPSELSLVAGDVEKP 389

Query: 408 TEAEMEEAYESNKQR 452
           + +  EE     ++R
Sbjct: 390 SSSRREEPAGEERRR 404

>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 417 EMEEAYESNKQR-RVVKRKLPRGTSEYQAAWIVDDTDGEGDDSENDNPDGA 566
           + +  YE N+++ + +K ++    S+Y+     DD+D EG DS +D P  A
Sbjct: 382 KFDPEYEENEEKYKKLKAEILGEGSDYE-----DDSDDEGSDSSDDEPAAA 427

>RL12_HALMA (P15772) 50S ribosomal protein L12P ('A' type) (Hmal12)|
          Length = 115

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 375 PDPLAGEQTWPTEAEMEEAYESNKQRRVVKRKLPRGTSEYQAAWIVDDTDGEGDDSENDN 554
           P P +G    P E + +EA E++++            +E +AA    D  G+ DD E+D 
Sbjct: 61  PVPASGGAAAPAEGDADEADEADEE------------AEEEAA----DDGGDDDDDEDDE 104

Query: 555 PDGAGM 572
             G G+
Sbjct: 105 ASGEGL 110

>LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology|
           domain-containing protein 4 (Leucine-rich neuronal
           protein)
          Length = 683

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +3

Query: 237 DILKDPCPVSERKNSDVMDSDDNQIQIIDTFVPDPLNQEPLLVENIP---DPLAGEQTWP 407
           ++ ++P    ERK     D D  QI  ID+ VP    +   + E  P    P AG++   
Sbjct: 330 ELAREPRGPRERKEDGSADGDPVQIDFIDSHVPGEDEERGTVEEQRPPELSPGAGDRERA 389

Query: 408 TEAEMEEAYESNKQR 452
             +  EE     ++R
Sbjct: 390 PSSRREEPAGEERRR 404

>ZN236_HUMAN (Q9UL36) Zinc finger protein 236|
          Length = 1845

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +3

Query: 384 LAGEQTWPTEAEMEEAYES-----NKQRRVVKRKLP 476
           ++ EQT PT+AE E+  ES      K+++++K+K P
Sbjct: 432 VSNEQTDPTDAEQEKEQESPEKLDKKEKKMIKKKSP 467

>NRDJ_STRAW (Q82KE2) Vitamin B12-dependent ribonucleotide reductase (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase nrdJ)
          Length = 964

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 393 EQTWPTEAEMEEAYESNKQRRVVKRKLPRGTSEYQAAWIVDDTDGEGDDSENDNP-DGAG 569
           E T  TEA + EA E   + R V+++LP+G      ++ V     EG  + N  P DG G
Sbjct: 717 EVTAKTEATIREAVEKVVEYRPVRKRLPKGRPGITTSFTVG--GAEGYMTANSYPDDGLG 774

Query: 570 MV 575
            V
Sbjct: 775 EV 776


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,985,901
Number of Sequences: 219361
Number of extensions: 1747987
Number of successful extensions: 4833
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4820
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)