ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14e22 |
|---|---|
| Clone Library Name | barley_pub |
>PTPM1_DROME (Q86BN8) Protein-tyrosine phosphatase mitochondrial 1-like protein,| mitochondrial precursor (EC 3.1.3.48) (EC 3.1.3.16) (PTEN-like protein) Length = 200 Score = 46.6 bits (109), Expect = 5e-05 Identities = 19/37 (51%), Positives = 30/37 (81%) Frame = +3 Query: 483 ARMLFYPTLVYNVVRNQCESHFHWWDQVDEHVLLGAV 593 AR+ FYPTL+YNV+ + + +W+D++DEHV+LGA+ Sbjct: 9 ARVSFYPTLLYNVLMEKASAR-NWYDRIDEHVILGAL 44
>PTPM1_MOUSE (Q66GT5) Protein-tyrosine phosphatase mitochondrial 1,| mitochondrial precursor (EC 3.1.3.48) (EC 3.1.3.16) (PTEN-like phosphatase) (Phosphoinositide lipid phosphatase) Length = 193 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%) Frame = +3 Query: 483 ARMLFYPTLVYNVVRNQCE--SHFHWWDQVDEHVLLGAV 593 AR+LFYPTL+Y V R + +H W+ ++D VLLGA+ Sbjct: 12 ARVLFYPTLLYTVFRGRVRGPAHRDWYHRIDHTVLLGAL 50
>PTPM1_RAT (P0C089) Protein-tyrosine phosphatase mitochondrial 1,| mitochondrial precursor (EC 3.1.3.48) (EC 3.1.3.16) Length = 193 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%) Frame = +3 Query: 483 ARMLFYPTLVYNVVRNQC--ESHFHWWDQVDEHVLLGAV 593 AR+LFYPTL+Y V R + +H W+ ++D VLLGA+ Sbjct: 12 ARVLFYPTLLYTVFRGRVGGPAHRDWYHRIDHTVLLGAL 50
>PTPM1_HUMAN (Q8WUK0) Protein-tyrosine phosphatase mitochondrial 1,| mitochondrial precursor (EC 3.1.3.48) (EC 3.1.3.16) (PTEN-like phosphatase) (Phosphoinositide lipid phosphatase) Length = 201 Score = 39.3 bits (90), Expect = 0.009 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%) Frame = +3 Query: 483 ARMLFYPTLVYNVVRNQC--ESHFHWWDQVDEHVLLGAV 593 AR+LFYPTL+Y + R + +H W+ ++D VLLGA+ Sbjct: 12 ARVLFYPTLLYTLFRGKVPGRAHRDWYHRIDPTVLLGAL 50
>ITB1B_XENLA (P12607) Integrin beta-1-B precursor (Integrin beta-1*)| Length = 798 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +1 Query: 220 RDRSGADRVGRRCESRSFPAIRAAGVVAEGRGSCSCVVRMAAPTVGS*SC 369 RD G+ CE +F R+ G++ G+G C C V P +C Sbjct: 541 RDNPNEVYSGKYCECDNFNCDRSNGLICGGKGVCKCRVCECFPNYSGSAC 590
>ITB1A_XENLA (P12606) Integrin beta-1-A precursor| Length = 798 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +1 Query: 220 RDRSGADRVGRRCESRSFPAIRAAGVVAEGRGSCSCVVRMAAPTVGS*SC 369 RD G+ CE +F R+ G++ G+G C C V P +C Sbjct: 541 RDNPNEVYSGKYCECDNFNCDRSNGLICGGKGICKCRVCECFPNYSGSAC 590
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Frame = -2 Query: 258 ASPPNSIRSAPIAMGNPRTKST----QQQKSPNRNLSRRGSEQRGA--DRSGAGGWNRFG 97 +SP ++++SAP +GN + ST + +S ++ +SR E R A D G G + Sbjct: 302 SSPSSTVQSAPTPLGNEASASTSPDNEASQSFDKPVSRPEQELRRATTDNKGVGQFTGPS 361 Query: 96 FAIPQ 82 A+P+ Sbjct: 362 VAVPE 366
>ITB1_MOUSE (P09055) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/58 (27%), Positives = 24/58 (41%) Frame = +1 Query: 220 RDRSGADRVGRRCESRSFPAIRAAGVVAEGRGSCSCVVRMAAPTVGS*SCLARMAVSP 393 RD + G+ CE +F R+ G++ G G C C V P +C + P Sbjct: 541 RDNTNEIYSGKFCECDNFNCDRSNGLICGGNGVCRCRVCECYPNYTGSACDCSLDTGP 598
>ITB1_BOVIN (P53712) Integrin beta-1 (Fibronectin receptor beta subunit)| (Integrin VLA-4 beta subunit) (CD29 antigen) (Fragment) Length = 773 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Frame = +1 Query: 220 RDRSGADRVGRRCESRSFPAIRAAGVVAEGRGSCSCVVRMAAP---------TVGS*SCL 372 RD + G+ CE +F R+ G++ G G C C V P ++G+ SC+ Sbjct: 518 RDNTNEIYSGKFCECDNFNCDRSNGLICGGNGVCKCRVCECNPNYTGSACDCSLGTTSCM 577 Query: 373 A 375 A Sbjct: 578 A 578
>ITB1_HUMAN (P05556) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +1 Query: 220 RDRSGADRVGRRCESRSFPAIRAAGVVAEGRGSCSCVVRMAAPTVGS*SC 369 RD + G+ CE +F R+ G++ G G C C V P +C Sbjct: 541 RDNTNEIYSGKFCECDNFNCDRSNGLICGGNGVCKCRVCECNPNYTGSAC 590
>ITB1_FELCA (P53713) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +1 Query: 220 RDRSGADRVGRRCESRSFPAIRAAGVVAEGRGSCSCVVRMAAPTVGS*SC 369 RD + G+ CE +F R+ G++ G G C C V P +C Sbjct: 541 RDNTNEIYSGKFCECDNFNCDRSNGLICGGNGVCKCRVCECNPNYTGSAC 590
>ITB1_CHICK (P07228) Integrin beta-1 precursor (CSAT antigen) (JG22 antigen)| (RGD-receptor) Length = 803 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = +1 Query: 247 GRRCESRSFPAIRAAGVVAEGRGSCSCVVRMAAPTVGS*SCLARMAVSP 393 G+ CE +F R+ G++ G G C C V P +C + +P Sbjct: 555 GKYCECDNFNCDRSNGLICGGNGICKCRVCECFPNFTGSACDCSLDTTP 603
>YO128_YEAST (Q08281) WD-repeat protein YOL138C| Length = 1341 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -3 Query: 272 KLLDSHLLPTRSAPLRSRWETLGQNRLNNK 183 K+++SHLL + P + W TL ++NNK Sbjct: 766 KIIESHLLKKYNFPENNTWATLMNEKVNNK 795
>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs| Length = 716 Score = 30.0 bits (66), Expect = 5.3 Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 23/97 (23%) Frame = -3 Query: 242 RSAPLRSRWETLGQNRLNNKNPPTGIYQ----------------GGGVSNAARIDRARVG 111 R P+ SR G NRLNN+ G +Q GGG+ DRA+ Sbjct: 121 RGGPMVSRGGGAG-NRLNNRRGQGGGFQNRGATGSGPKPPPKQGGGGIRKQNAFDRAK-- 177 Query: 110 GIDLGSRSRNLEKKSNPL-------SPTFPSAHASSP 21 L +++ N KK P SPT S +AS P Sbjct: 178 --KLLAKNANQNKKKEPTPGEKKIESPTKESPYASVP 212
>TGT_YERPS (Q66DW5) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 374 Score = 30.0 bits (66), Expect = 5.3 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 13/80 (16%) Frame = -3 Query: 242 RSAPLRSRWETLGQNR---LNNKNPPTGIYQGGGVSNAARI----------DRARVGGID 102 RS + RW + R LNNKN GI QGG + + D VGG+ Sbjct: 157 RSMEMSLRWAARSRQRFDELNNKNALFGIIQGGVYEDLRDVSVKGLVDIGFDGYAVGGLA 216 Query: 101 LGSRSRNLEKKSNPLSPTFP 42 +G ++ + + P P Sbjct: 217 VGEPKEDMHRILEHVCPQIP 236
>TGT_YERPE (Q8ZC33) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 374 Score = 30.0 bits (66), Expect = 5.3 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 13/80 (16%) Frame = -3 Query: 242 RSAPLRSRWETLGQNR---LNNKNPPTGIYQGGGVSNAARI----------DRARVGGID 102 RS + RW + R LNNKN GI QGG + + D VGG+ Sbjct: 157 RSMEMSLRWAARSRQRFDELNNKNALFGIIQGGVYEDLRDVSVKGLVDIGFDGYAVGGLA 216 Query: 101 LGSRSRNLEKKSNPLSPTFP 42 +G ++ + + P P Sbjct: 217 VGEPKEDMHRILEHVCPQIP 236
>ITB3_HUMAN (P05106) Integrin beta-3 precursor (Platelet membrane glycoprotein| IIIa) (GPIIIa) (CD61 antigen) Length = 788 Score = 30.0 bits (66), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 247 GRRCESRSFPAIRAAGVVAEGRGSCSC 327 G+ CE F +R G + G G CSC Sbjct: 544 GKYCECDDFSCVRYKGEMCSGHGQCSC 570
>GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (Golgi| complex-associated protein of 170 kDa) (GCP170) Length = 1498 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Frame = -2 Query: 255 SPPNSIRSAPIAMGNPRTKSTQQQKSPNRNLSRRGSEQRGADRSGAGGWNRFGFA--IPQ 82 S P+S+ AP+ P QQ K ++R +E D G GG + G P Sbjct: 18 SGPSSLPEAPLKPPGPLVPPDQQDKVQCAEVNRASTEGESPDGPGQGGLCQNGPTPPFPD 77 Query: 81 PGEEIQPS 58 P + P+ Sbjct: 78 PPSSLDPT 85
>WIS1_SCHPO (P33886) Protein kinase wis1 (EC 2.7.12.2) (Protein kinase sty2)| Length = 605 Score = 29.6 bits (65), Expect = 6.9 Identities = 31/103 (30%), Positives = 46/103 (44%) Frame = -3 Query: 311 RPSATTPAARIAGKLLDSHLLPTRSAPLRSRWETLGQNRLNNKNPPTGIYQGGGVSNAAR 132 R S P +++AG+L +S + + + P ++L R N PT + R Sbjct: 180 RGSYPLPNSQLAGRLSNSPV-KSPNMPESGLAKSLAAARNPLLNRPTSF------NRQTR 232 Query: 131 IDRARVGGIDLGSRSRNLEKKSNPLSPTFPSAHASSPLLCLVP 3 I RA G +DL + SNP SP PS+ AS L + P Sbjct: 233 IRRAPPGKLDLSN--------SNPTSPVSPSSMASRRGLNIPP 267
>VASP_MOUSE (P70460) Vasodilator-stimulated phosphoprotein (VASP)| Length = 374 Score = 29.3 bits (64), Expect = 9.0 Identities = 21/67 (31%), Positives = 25/67 (37%) Frame = -2 Query: 252 PPNSIRSAPIAMGNPRTKSTQQQKSPNRNLSRRGSEQRGADRSGAGGWNRFGFAIPQPGE 73 PP A A P + +QQK ++ RR S G AGG P PG Sbjct: 118 PPAPAPPAWSAQNGPSPEELEQQKRQPEHMERRVSNAGGPPAPPAGGPPPPPGPPPPPGP 177 Query: 72 EIQPSLP 52 P LP Sbjct: 178 PPPPGLP 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,651,931 Number of Sequences: 219361 Number of extensions: 1340547 Number of successful extensions: 4984 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4974 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
